RLG00000010751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016021
Physical Location & Seq
Forward (+)
4090512 .. 4091408
897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010751

Sequence Viewer

Length: 897 bp
ATGGGTTCTTGCATTAGCAAATGCAGTCCCAAAAACCACTTTCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCAAAGACAAACTGGTAATCTCAACCCAACCTCCTAAACCCACCACTCCAATTCCTTCTCACCATTCAAACAAAATCTCACCCTTTCCTTCTTCCCCTTCAAATTCCACTTCATCAGTTTCTTCCTTCAGTTATTGCCCCACCACCACTACAAGTAGTACTACTAATTCTAACTCCACCATCAGCTCATCGAGCTCAACCCTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCAAACGAGTTCTTGTGGTCATGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACGTTGAAAAAACAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACACCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTGAAGCGACAGAAGAGCTTCCGTAAAGAACCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACCGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTAGTGGCCAACCCGCCAAAAAAGGGCTCAAATCTTAGGCCGCCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTTAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTCTGGCTCATGACCATTACATGGAGTCTGTTCCTGAGGACATTGACAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.76

Weight (kDa)

9.83

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 832
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 4 cut(s) 419, 488, 659, 686
AclI AACGTT 1 cut(s) 425
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 3 cut(s) 187, 279, 545
AfaI GTAC 3 cut(s) 235, 475, 511
AfeI AGCGCT 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 668, 832
AgsI TTSAA 8 cut(s) 44, 144, 177, 312, 333, 390, 430, 619
AluBI AGCT 5 cut(s) 261, 270, 540, 588, 812
AluI AGCT 5 cut(s) 261, 270, 540, 588, 812
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 606, 746
AlwI GGATC 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 554
Aor13HI TCCGGA 1 cut(s) 501
Aor51HI AGCGCT 1 cut(s) 289
AoxI GGCC 3 cut(s) 651, 683, 725
ApeKI GCWGC 4 cut(s) 285, 416, 439, 442
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 1 cut(s) 290
AsuHPI GGTGA 4 cut(s) 128, 147, 507, 588
AvaI CYCGRG 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 846
BalI TGGCCA 1 cut(s) 653
BanII GRGCYC 3 cut(s) 272, 452, 674
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 297, 428, 451, 454
BccI CCATC 1 cut(s) 263
BcgI CGANNNNNNTGC 4 cut(s) 359, 393, 779, 813
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 606, 746
BfaI CTAG 2 cut(s) 582, 690
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 6 cut(s) 286, 417, 420, 440, 443, 686
BlsI GCNGC 6 cut(s) 287, 418, 421, 441, 444, 687
BmcAI AGTACT 2 cut(s) 235, 511
BmeT110I CYCGRG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 610
Bsa29I ATCGAT 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 832
Bse1I ACTGG 2 cut(s) 93, 410
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 668, 832
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 837
BseNI ACTGG 2 cut(s) 93, 410
BseXI GCAGC 4 cut(s) 297, 428, 451, 454
BshFI GGCC 3 cut(s) 653, 685, 727
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 668, 832
BsmAI GTCTC 2 cut(s) 606, 746
BsmBI CGTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 3 cut(s) 653, 685, 727
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 272, 452, 674
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 5 cut(s) 58, 315, 323, 567, 774
BspACI CCGC 4 cut(s) 419, 488, 659, 686
BspANI GGCC 3 cut(s) 653, 685, 727
BspCNI CTCAG 1 cut(s) 838
BspDI ATCGAT 1 cut(s) 789
BspEI TCCGGA 1 cut(s) 501
BspHI TCATGA 1 cut(s) 820
BspPI GGATC 1 cut(s) 782
BspQI GCTCTTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 2 cut(s) 93, 410
BssMI GATC 5 cut(s) 58, 315, 323, 567, 774
Bst4CI ACNGT 2 cut(s) 600, 646
Bst6I CTCTTC 2 cut(s) 488, 530
BstDEI CTNAG 2 cut(s) 680, 846
BstEII GGTNACC 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 5 cut(s) 61, 318, 326, 570, 777
BstMAI GTCTC 2 cut(s) 606, 746
BstMBI GATC 5 cut(s) 58, 315, 323, 567, 774
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstPI GGTNACC 1 cut(s) 594
BstV1I GCAGC 4 cut(s) 297, 428, 451, 454
Bsu15I ATCGAT 1 cut(s) 789
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 3 cut(s) 653, 685, 727
BsuTUI ATCGAT 1 cut(s) 789
CciI TCATGA 1 cut(s) 820
CfoI GCGC 1 cut(s) 290
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 3 cut(s) 234, 474, 510
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 4 cut(s) 74, 351, 821, 832
CviQI GTAC 3 cut(s) 234, 474, 510
DdeI CTNAG 2 cut(s) 680, 846
DpnI GATC 5 cut(s) 60, 317, 325, 569, 776
DpnII GATC 5 cut(s) 58, 315, 323, 567, 774
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 488, 530
EarI CTCTTC 2 cut(s) 488, 530
Ecl136II GAGCTC 1 cut(s) 270
Eco24I GRGCYC 3 cut(s) 272, 452, 674
Eco47III AGCGCT 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 3 cut(s) 187, 279, 545
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 554
Eco91I GGTNACC 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 594
EcoT38I GRGCYC 3 cut(s) 272, 452, 674
Esp3I CGTCTC 1 cut(s) 606
FaeI CATG 4 cut(s) 77, 354, 824, 835
FaiI YATR 7 cut(s) 75, 352, 372, 374, 577, 822, 833
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 12
FatI CATG 4 cut(s) 73, 350, 820, 831
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 6 cut(s) 286, 417, 420, 440, 443, 686
FriOI GRGCYC 3 cut(s) 272, 452, 674
Fsp4HI GCNGC 6 cut(s) 286, 417, 420, 440, 443, 686
FspBI CTAG 2 cut(s) 582, 690
GlaI GCGC 1 cut(s) 289
GluI GCNGC 6 cut(s) 286, 417, 420, 440, 443, 686
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 3 cut(s) 653, 685, 727
HapII CCGG 1 cut(s) 502
HhaI GCGC 1 cut(s) 290
Hin1II CATG 4 cut(s) 77, 354, 824, 835
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 586
HinfI GANTC 4 cut(s) 498, 739, 766, 836
HpaII CCGG 1 cut(s) 502
HphI GGTGA 4 cut(s) 128, 147, 507, 588
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 4 cut(s) 525, 606, 628, 696
Hpy188III TCNNGA 4 cut(s) 502, 582, 821, 845
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 5 cut(s) 141, 174, 183, 211, 606
HpyCH4III ACNGT 2 cut(s) 600, 646
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 12, 24, 69, 416, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 680, 846
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 4 cut(s) 77, 354, 824, 835
HspAI GCGC 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 5 cut(s) 58, 315, 323, 567, 774
LguI GCTCTTC 1 cut(s) 530
Lsp1109I GCAGC 4 cut(s) 297, 428, 451, 454
MaeI CTAG 2 cut(s) 582, 690
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 594
MalI GATC 5 cut(s) 60, 317, 325, 569, 776
MboI GATC 5 cut(s) 58, 315, 323, 567, 774
MboII GAAGA 8 cut(s) 62, 65, 159, 189, 285, 505, 547, 643
MhlI GDGCHC 3 cut(s) 272, 452, 674
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 4 cut(s) 62, 126, 178, 241
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 3 cut(s) 507, 748, 845
MnlI CCTC 5 cut(s) 117, 455, 585, 841, 873
Mox20I TGGCCA 1 cut(s) 653
MroI TCCGGA 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 539
MscI TGGCCA 1 cut(s) 653
MseI TTAA 2 cut(s) 716, 735
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 5 cut(s) 58, 315, 323, 567, 774
NlaIII CATG 4 cut(s) 77, 354, 824, 835
NmeAIII GCCGAG 2 cut(s) 471, 703
NmuCI GTSAC 1 cut(s) 594
PagI TCATGA 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 766
PflMI CCANNNNNTGG 1 cut(s) 832
PkrI GCNGC 6 cut(s) 287, 418, 421, 441, 444, 687
PleI GAGTC 3 cut(s) 506, 747, 844
PpsI GAGTC 3 cut(s) 506, 747, 844
Psp124BI GAGCTC 1 cut(s) 272
Psp1406I AACGTT 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 594
RsaI GTAC 3 cut(s) 235, 475, 511
RsaNI GTAC 3 cut(s) 234, 474, 510
SacI GAGCTC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 2 cut(s) 716, 735
SatI GCNGC 6 cut(s) 286, 417, 420, 440, 443, 686
Sau3AI GATC 5 cut(s) 58, 315, 323, 567, 774
ScaI AGTACT 2 cut(s) 235, 511
SchI GAGTC 3 cut(s) 507, 748, 845
SduI GDGCHC 3 cut(s) 272, 452, 674
SetI ASST 9 cut(s) 109, 263, 272, 428, 542, 590, 596, 617, 814
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 4 cut(s) 62, 126, 178, 241
SsiI CCGC 4 cut(s) 419, 488, 659, 686
SspMI CTAG 2 cut(s) 582, 690
SstI GAGCTC 1 cut(s) 272
TaaI ACNGT 2 cut(s) 600, 646
TaiI ACGT 1 cut(s) 428
TaqI TCGA 5 cut(s) 48, 266, 302, 318, 789
TasI AATT 4 cut(s) 62, 126, 178, 241
TatI WGTACW 3 cut(s) 233, 473, 509
TauI GCSGC 2 cut(s) 422, 688
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 2 cut(s) 716, 735
Tru9I TTAA 2 cut(s) 716, 735
TseFI GTSAC 1 cut(s) 594
TseI GCWGC 4 cut(s) 285, 416, 439, 442
Tsp45I GTSAC 1 cut(s) 594
TspDTI ATGAA 2 cut(s) 177, 807
TspGWI ACGGA 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 832
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 2 cut(s) 582, 690
ZrmI AGTACT 2 cut(s) 235, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.