AT1G22030

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010507
Physical Location & Seq
Reverse (-)
7759077 .. 7760929
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22030.1

Sequence Viewer

Length: 1002 bp
ATGGATCCGTCCTGTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATGGAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGAGCTCTCTGTCTTCTCCGTACCTCTCACTCTCATCTCACTCTCTTAGTTCAAAAACTTCAACTTCCCGTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCCAAACTTTGGGAAGCTTGTCTCGTCATCAAATCCGCCGTCTCCTCCGTCGAAAACTTCTCCTCCGCCGGAATTTCGATCGCTTCCACCCTCGACCGTCGTCTCTCTCCTCAGCTTTCTCGTCAGGTGATAAGGGCGATATCAGGATGTAGAAGAGAAGCGATAGGGATAGAGGAAGAAAACAGAGCATTAATGGAGAACAGAGTTCAAAGGTTTCCGTTTTGGTCGGAACAAACGTCGGCGACGGCGATGGAGTCGTCGACGAAGTTACAAAACGGGTTCAGTGGTTTTCGCGGCGTGCTTTACGCGACGAGGAACATGAGTTCGCTTCTCCTTATGGTTTTAATGAACGGTCTCGTCTACTGTTTTCCCGGAGACGCGGCAACGCAAACGCAGACGCAGATAACGCAAACGCAGAGTCAAGTCGGAGGTTTCGCCGGAGCAATGGGGAGGTTGCAGCAGAGAGTGGCGGCTGAGGTTGGGAGGATGGGGATAAGGAAAGGAATATTGATGCACGAGTATCGCCGGAGCAAAGCGGCGTTGGAGGAGCTTAAAGCGGAGCTGGAGCGGCGGTTCTGCGGTGGCGGTGGTGGTGGGGGAGAGAGGGAGGAGGAGGAGGAGGACGAGAGGGAGCTGAGAGAGAGAGTTGAGAATCTGAAAGGGTATTTTGGTAATTTAAGGAATGGGACAGAGAGTATAGTGGCGCAAATCGATGATTTCTTCGATGAGATTGTTGAAGGAAGGAAAAAGCTTTTGGATTTCTGCAGCCATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

333

Amino Acids

37.53

Weight (kDa)

6.07

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AccBSI CCGCTC 1 cut(s) 793
AccI GTMKAC 2 cut(s) 485, 585
AccII CGCG 3 cut(s) 519, 533, 605
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 2 cut(s) 105, 139
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 5 cut(s) 87, 170, 179, 434, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AloI GAACNNNNNNTCC 4 cut(s) 532, 564, 782, 814
AluBI AGCT 8 cut(s) 122, 225, 242, 340, 775, 787, 859, 976
AluI AGCT 8 cut(s) 122, 225, 242, 340, 775, 787, 859, 976
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 5 cut(s) 251, 271, 332, 584, 594
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 682, 990
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 4 cut(s) 249, 281, 628, 660
AseI ATTAAT 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 931
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 2 cut(s) 203, 364
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 124
BbvCI CCTCAGC 2 cut(s) 336, 699
BbvI GCAGC 1 cut(s) 694
BccI CCATC 2 cut(s) 469, 706
BceAI ACGGC 2 cut(s) 248, 486
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 5 cut(s) 251, 271, 332, 584, 594
BfmI CTRYAG 1 cut(s) 988
BglII AGATCT 1 cut(s) 64
BisI GCNGC 7 cut(s) 520, 606, 683, 696, 762, 794, 991
BlsI GCNGC 7 cut(s) 521, 607, 684, 697, 763, 795, 992
Bme1390I CCNGG 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 726
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 809
Bpu10I CCTNAGC 2 cut(s) 336, 699
BpuMI CCSGG 1 cut(s) 597
Bsa29I ATCGAT 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 584
BsaXI ACNNNNNCTCC 6 cut(s) 209, 239, 272, 302, 782, 812
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 675
BseCI ATCGAT 1 cut(s) 936
BseGI GGATG 2 cut(s) 377, 717
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 4 cut(s) 36, 350, 690, 851
BseRI GAGGAG 8 cut(s) 259, 277, 324, 785, 848, 851, 854, 857
BseXI GCAGC 1 cut(s) 694
Bsh1236I CGCG 3 cut(s) 519, 533, 605
Bsh1285I CGRYCG 2 cut(s) 306, 322
BshVI ATCGAT 1 cut(s) 936
BsiEI CGRYCG 2 cut(s) 306, 322
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 4 cut(s) 294, 597, 663, 751
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 5 cut(s) 251, 271, 332, 584, 594
BsmBI CGTCTC 3 cut(s) 271, 332, 594
BsmFI GGGAC 1 cut(s) 925
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 4 cut(s) 4, 53, 64, 303
BspCNI CTCAG 4 cut(s) 35, 349, 691, 852
BspDI ATCGAT 1 cut(s) 936
BspFNI CGCG 3 cut(s) 519, 533, 605
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 992
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 675
BssMI GATC 4 cut(s) 4, 53, 64, 303
BssSI CACGAG 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 740
Bst4CI ACNGT 3 cut(s) 323, 578, 590
Bst6I CTCTTC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 5 cut(s) 22, 163, 336, 699, 860
BstF5I GGATG 2 cut(s) 377, 717
BstFNI CGCG 3 cut(s) 519, 533, 605
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 4 cut(s) 7, 56, 67, 306
BstMAI GTCTC 5 cut(s) 251, 271, 332, 584, 594
BstMBI GATC 4 cut(s) 4, 53, 64, 303
BstMCI CGRYCG 2 cut(s) 306, 322
BstMWI GCNNNNNNNGC 2 cut(s) 631, 793
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 988
BstUI CGCG 3 cut(s) 519, 533, 605
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 4, 64
BstYI RGATCY 2 cut(s) 4, 64
Bsu15I ATCGAT 1 cut(s) 936
BsuTUI ATCGAT 1 cut(s) 936
BtgZI GCGATG 1 cut(s) 488
BtsCI GGATG 2 cut(s) 377, 717
BtsIMutI CAGTG 2 cut(s) 30, 514
Cac8I GCNNGC 1 cut(s) 524
CfoI GCGC 1 cut(s) 931
ClaI ATCGAT 1 cut(s) 936
CseI GACGC 2 cut(s) 611, 631
Csp6I GTAC 2 cut(s) 104, 138
CviAII CATG 2 cut(s) 97, 544
CviQI GTAC 2 cut(s) 104, 138
DdeI CTNAG 5 cut(s) 22, 163, 336, 699, 860
DpnI GATC 4 cut(s) 6, 55, 66, 305
DpnII GATC 4 cut(s) 4, 53, 64, 303
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
EciI GGCGGA 2 cut(s) 250, 280
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 584
Eco32I GATATC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoRV GATATC 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 124
Esp3I CGTCTC 3 cut(s) 271, 332, 594
FaeI CATG 2 cut(s) 100, 547
FaiI YATR 7 cut(s) 98, 213, 215, 545, 563, 923, 996
FaqI GGGAC 1 cut(s) 925
FatI CATG 2 cut(s) 96, 543
FblI GTMKAC 2 cut(s) 485, 585
Fnu4HI GCNGC 7 cut(s) 520, 606, 683, 696, 762, 794, 991
FokI GGATG 2 cut(s) 384, 724
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 7 cut(s) 520, 606, 683, 696, 762, 794, 991
GlaI GCGC 1 cut(s) 930
GluI GCNGC 7 cut(s) 520, 606, 683, 696, 762, 794, 991
GsuI CTGGAG 1 cut(s) 809
HapII CCGG 4 cut(s) 294, 597, 663, 751
HgaI GACGC 2 cut(s) 611, 631
HhaI GCGC 1 cut(s) 931
Hin1II CATG 2 cut(s) 100, 547
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 2 cut(s) 240, 974
HinfI GANTC 4 cut(s) 33, 479, 643, 877
HpaII CCGG 4 cut(s) 294, 597, 663, 751
HphI GGTGA 2 cut(s) 203, 364
Hpy166II GTNNAC 4 cut(s) 28, 106, 486, 586
Hpy188I TCNGA 3 cut(s) 454, 653, 882
Hpy188III TCNNGA 2 cut(s) 68, 369
Hpy8I GTNNAC 4 cut(s) 28, 106, 486, 586
Hpy99I CGWCG 8 cut(s) 191, 278, 327, 466, 472, 487, 490, 538
HpyAV CCTTC 2 cut(s) 956, 960
HpyCH4III ACNGT 3 cut(s) 323, 578, 590
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 17, 682, 739, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 631, 793
HpyF3I CTNAG 5 cut(s) 22, 163, 336, 699, 860
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 2 cut(s) 100, 547
HspAI GCGC 1 cut(s) 929
Kzo9I GATC 4 cut(s) 4, 53, 64, 303
LmnI GCTCC 7 cut(s) 230, 665, 753, 772, 784, 790, 856
LpnPI CCDG 8 cut(s) 25, 307, 335, 354, 610, 676, 764, 773
Lsp1109I GCAGC 1 cut(s) 694
LweI GCATC 1 cut(s) 726
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 191, 492
MalI GATC 4 cut(s) 6, 55, 66, 305
MbiI CCGCTC 1 cut(s) 793
MboI GATC 4 cut(s) 4, 53, 64, 303
MboII GAAGA 5 cut(s) 74, 122, 390, 413, 937
MflI RGATCY 2 cut(s) 4, 64
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 91, 297, 898
MlyI GAGTC 2 cut(s) 488, 652
MmeI TCCRAC 3 cut(s) 432, 631, 747
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 4 cut(s) 416, 569, 777, 902
MspI CCGG 4 cut(s) 294, 597, 663, 751
MspR9I CCNGG 1 cut(s) 597
MvnI CGCG 3 cut(s) 519, 533, 605
MwoI GCNNNNNNNGC 2 cut(s) 631, 793
NciI CCSGG 1 cut(s) 597
NdeII GATC 4 cut(s) 4, 53, 64, 303
NlaIII CATG 2 cut(s) 100, 547
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 458, 470
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 33, 877
PflMI CCANNNNNTGG 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 7 cut(s) 521, 607, 684, 697, 763, 795, 992
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 2 cut(s) 487, 651
PpsI GAGTC 2 cut(s) 487, 651
PshAI GACNNNNGTC 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 20, 52
PstI CTGCAG 1 cut(s) 992
PsuI RGATCY 2 cut(s) 4, 64
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 2 cut(s) 105, 139
RsaNI GTAC 2 cut(s) 104, 138
SacI GAGCTC 1 cut(s) 124
SalI GTCGAC 1 cut(s) 484
SaqAI TTAA 4 cut(s) 416, 569, 777, 902
SatI GCNGC 7 cut(s) 520, 606, 683, 696, 762, 794, 991
Sau3AI GATC 4 cut(s) 4, 53, 64, 303
SchI GAGTC 2 cut(s) 488, 652
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 1 cut(s) 988
SgrDI CGTCGACG 1 cut(s) 484
Sse9I AATT 3 cut(s) 91, 297, 898
SspI AATATT 1 cut(s) 732
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 323, 578, 590
TaiI ACGT 1 cut(s) 464
TaqI TCGA 8 cut(s) 69, 204, 276, 302, 318, 485, 936, 948
TasI AATT 3 cut(s) 91, 297, 898
TauI GCSGC 5 cut(s) 522, 608, 698, 764, 796
TfiI GAWTC 2 cut(s) 33, 877
Tru1I TTAA 4 cut(s) 416, 569, 777, 902
Tru9I TTAA 4 cut(s) 416, 569, 777, 902
TscAI CASTG 2 cut(s) 30, 514
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 682, 990
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 85, 587
TspGWI ACGGA 5 cut(s) 45, 91, 125, 262, 432
TspRI CASTG 2 cut(s) 30, 514
Van91I CCANNNNNTGG 1 cut(s) 234
VspI ATTAAT 1 cut(s) 416
XapI RAATTY 1 cut(s) 297
XmiI GTMKAC 2 cut(s) 485, 585
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.