Prupe.1G507700_v2.0.a1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010507
Physical Location & Seq
Reverse (-)
41884800 .. 41886850
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G507700.1

Sequence Viewer

Length: 966 bp
ATGGATCCTTCATCCACCAACTCTGTCAATGGCTTCTATTCGTTTCTGACTCGCGGGATCGACGATCTTGAAAGGGTTTATCTTTCAAACAACTTCATGTCAATCCAATTCCTTCAAAGGGCTCTTTCCCTTCTTCGATCTTTTCATTCCCAGCTGACCCTTCTCGTCCAAAAGCTCCATTTGCCTGTTGGGGACAAGTGGCTTGACGAGTACATGGACGAAAGCTCCAAGCTTTGGGAAGCCTGCCATGTCCTCAAGTCTGCCATCTCTGCCATGGAGAATTACTACACGTCTGGCCTCAACATCACCTCTACCCTCGACTCTCATCGCCATCTCACTCCTCAGCTCTCTCGCCAGGTGGTTCGCGCGATTTCTGGGTGTCGGCGAGAGGCGTTTGGATTGGAGGAAGAGAACAGAGCGCTGATGGAGACGAGAATTCAACCACTCTCACTGAAATTCGACGAAAGGGTCTCCATCGAATCGAAGCTTAATGGGTTCAACGGGTTCAGGGGAGTTCTTTATGCAATGAGAAACGTAAGCTCTCTGCTTCTCATGATCTTGCTCTATGGACTGGTCTTCTGTTGGCCAGAGTCAAGCTTCTGCAGGGGAGGCTACGAGGGCTGCTTGATCTTCGGATCATCGTTCATGATATCAACGGCTAGATTGCAGCAAAGGGTAGCAGCAGAGATCAGCCAGATCAATGAAAGGCCTGGGATTTTGATGTGGGAGTTCAGGAGGTCCAAGATGGCCATGGATGAGCTGAGAGGTGAATTGGAGAGGAGGGGCCCACAGGGGGTGATGGATTGGGAGAGTGAGGGTGGGATTAGAGAGAGAGTGGACAACTTGAGAGGGTGTTTTGGTGTCTTGAGATCTGGTGCTGAGAATATTATCAGCCAACTTGATGATTTCTTTGATGAAATTGTTGAAGGGAGGAAGAAGCTTTTGGACTTTTGCAGTCATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

322

Amino Acids

36.8

Weight (kDa)

6.13

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 234
AccII CGCG 3 cut(s) 54, 366, 368
AciI CCGC 1 cut(s) 54
AclWI GGATC 3 cut(s) 12, 65, 643
AcoI YGGCCR 2 cut(s) 584, 747
AcsI RAATTY 2 cut(s) 435, 455
AfaI GTAC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 420
AfiI CCNNNNNNNGG 3 cut(s) 118, 234, 793
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 6 cut(s) 71, 87, 116, 440, 499, 926
AjiI CACGTC 1 cut(s) 291
AjnI CCWGG 2 cut(s) 354, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
Alw26I GTCTC 2 cut(s) 422, 475
AlwI GGATC 3 cut(s) 12, 65, 643
Aor51HI AGCGCT 1 cut(s) 420
AoxI GGCC 5 cut(s) 295, 584, 707, 747, 784
ApaI GGGCCC 1 cut(s) 788
ApeKI GCWGC 3 cut(s) 621, 667, 680
ApoI RAATTY 2 cut(s) 435, 455
AspLEI GCGC 2 cut(s) 368, 421
AspS9I GGNCC 3 cut(s) 738, 784, 785
AsuHPI GGTGA 3 cut(s) 298, 779, 808
AvaII GGWCC 1 cut(s) 738
BaeGI GKGCMC 1 cut(s) 788
BalI TGGCCA 2 cut(s) 586, 749
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 124, 788
BbsI GAAGAC 1 cut(s) 568
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 3 cut(s) 608, 679, 692
BccI CCATC 6 cut(s) 272, 339, 418, 482, 739, 793
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 356, 711
BcoDI GTCTC 2 cut(s) 422, 475
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 422
BglII AGATCT 1 cut(s) 869
BisI GCNGC 3 cut(s) 622, 668, 681
BlsI GCNGC 3 cut(s) 623, 669, 682
Bme1390I CCNGG 2 cut(s) 356, 711
Bme18I GGWCC 1 cut(s) 738
BmgBI CACGTC 1 cut(s) 291
BmgT120I GGNCC 3 cut(s) 738, 784, 785
BmiI GGNNCC 3 cut(s) 6, 785, 786
BmrFI CCNGG 2 cut(s) 356, 711
BpiI GAAGAC 1 cut(s) 568
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 3 cut(s) 239, 865, 886
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 273, 710, 750
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 234, 793
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 356, 711
BseDI CCNNGG 3 cut(s) 273, 710, 750
BseGI GGATG 2 cut(s) 11, 760
BseLI CCNNNNNNNGG 3 cut(s) 118, 234, 793
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 3 cut(s) 356, 752, 870
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 2 cut(s) 330, 793
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 3 cut(s) 608, 679, 692
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 3 cut(s) 54, 366, 368
BshFI GGCC 5 cut(s) 297, 586, 709, 749, 786
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 118, 234, 793
BsmAI GTCTC 2 cut(s) 422, 475
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 5 cut(s) 297, 586, 709, 749, 786
Bso31I GGTCTC 1 cut(s) 475
Bsp120I GGGCCC 1 cut(s) 784
Bsp1286I GDGCHC 2 cut(s) 124, 788
Bsp19I CCATGG 2 cut(s) 273, 750
BspACI CCGC 1 cut(s) 54
BspANI GGCC 5 cut(s) 297, 586, 709, 749, 786
BspCNI CTCAG 3 cut(s) 355, 753, 871
BspFNI CGCG 3 cut(s) 54, 366, 368
BspHI TCATGA 2 cut(s) 552, 645
BspLI GGNNCC 3 cut(s) 6, 785, 786
BspMAI CTGCAG 1 cut(s) 605
BspPI GGATC 3 cut(s) 12, 65, 643
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 3 cut(s) 273, 710, 750
BssT1I CCWWGG 2 cut(s) 273, 750
Bst2UI CCWGG 2 cut(s) 356, 711
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 342, 761, 879
BstDSI CCRYGG 2 cut(s) 273, 750
BstF5I GGATG 2 cut(s) 11, 760
BstFNI CGCG 3 cut(s) 54, 366, 368
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 2 cut(s) 368, 421
BstMAI GTCTC 2 cut(s) 422, 475
BstMWI GCNNNNNNNGC 4 cut(s) 181, 269, 609, 618
BstNI CCWGG 2 cut(s) 356, 711
BstSCI CCNGG 2 cut(s) 354, 709
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 1 cut(s) 788
BstUI CGCG 3 cut(s) 54, 366, 368
BstV1I GCAGC 3 cut(s) 608, 679, 692
BstV2I GAAGAC 1 cut(s) 568
BstX2I RGATCY 2 cut(s) 4, 869
BstYI RGATCY 2 cut(s) 4, 869
BsuRI GGCC 5 cut(s) 297, 586, 709, 749, 786
BtgI CCRYGG 2 cut(s) 273, 750
BtgZI GCGATG 1 cut(s) 311
BtrI CACGTC 1 cut(s) 291
BtsCI GGATG 2 cut(s) 11, 760
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 2 cut(s) 552, 645
CfoI GCGC 2 cut(s) 368, 421
Cfr13I GGNCC 3 cut(s) 738, 784, 785
Csp6I GTAC 1 cut(s) 211
CviAII CATG 7 cut(s) 97, 214, 248, 274, 553, 646, 751
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 3 cut(s) 342, 761, 879
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 2 cut(s) 584, 747
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 273, 750
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 2 cut(s) 124, 788
Eco31I GGTCTC 1 cut(s) 475
Eco32I GATATC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 738
Eco47III AGCGCT 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 354, 709
EcoRV GATATC 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 273, 750
EcoT38I GRGCYC 2 cut(s) 124, 788
ErhI CCWWGG 2 cut(s) 273, 750
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 7 cut(s) 100, 217, 251, 277, 556, 649, 754
FaqI GGGAC 1 cut(s) 206
FatI CATG 7 cut(s) 96, 213, 247, 273, 552, 645, 750
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 622, 668, 681
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 2 cut(s) 124, 788
Fsp4HI GCNGC 3 cut(s) 622, 668, 681
FspBI CTAG 1 cut(s) 660
GlaI GCGC 2 cut(s) 367, 420
GluI GCNGC 3 cut(s) 622, 668, 681
GsaI CCCAGC 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 5 cut(s) 297, 586, 709, 749, 786
HhaI GCGC 2 cut(s) 368, 421
Hin1II CATG 7 cut(s) 100, 217, 251, 277, 556, 649, 754
Hin6I GCGC 2 cut(s) 366, 419
HinP1I GCGC 2 cut(s) 366, 419
HindIII AAGCTT 4 cut(s) 230, 485, 595, 938
HinfI GANTC 4 cut(s) 49, 320, 479, 590
HphI GGTGA 3 cut(s) 298, 779, 808
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 2 cut(s) 48, 635
Hpy188III TCNNGA 5 cut(s) 68, 553, 646, 733, 865
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 2 cut(s) 65, 464
HpyAV CCTTC 5 cut(s) 18, 122, 140, 170, 920
HpyCH4IV ACGT 2 cut(s) 290, 534
HpyCH4V TGCA 4 cut(s) 524, 603, 667, 954
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 269, 609, 618
HpyF3I CTNAG 3 cut(s) 342, 761, 879
HpySE526I ACGT 2 cut(s) 290, 534
Hsp92II CATG 7 cut(s) 100, 217, 251, 277, 556, 649, 754
HspAI GCGC 2 cut(s) 366, 419
LmnI GCTCC 2 cut(s) 180, 230
Lsp1109I GCAGC 3 cut(s) 608, 679, 692
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 290, 534
MboII GAAGA 5 cut(s) 125, 419, 568, 622, 946
MflI RGATCY 2 cut(s) 4, 869
MhlI GDGCHC 2 cut(s) 124, 788
MlsI TGGCCA 2 cut(s) 586, 749
MluCI AATT 6 cut(s) 107, 280, 435, 455, 770, 918
MluNI TGGCCA 2 cut(s) 586, 749
MlyI GAGTC 3 cut(s) 43, 314, 599
Mox20I TGGCCA 2 cut(s) 586, 749
MscI TGGCCA 2 cut(s) 586, 749
MseI TTAA 1 cut(s) 489
Msp20I TGGCCA 2 cut(s) 586, 749
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 356, 711
MvaI CCWGG 2 cut(s) 356, 711
MvnI CGCG 3 cut(s) 54, 366, 368
MwoI GCNNNNNNNGC 4 cut(s) 181, 269, 609, 618
NcoI CCATGG 2 cut(s) 273, 750
NlaIII CATG 7 cut(s) 100, 217, 251, 277, 556, 649, 754
NlaIV GGNNCC 3 cut(s) 6, 785, 786
PagI TCATGA 2 cut(s) 552, 645
PceI AGGCCT 1 cut(s) 709
PfeI GAWTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 3 cut(s) 623, 669, 682
PleI GAGTC 3 cut(s) 43, 314, 598
PpsI GAGTC 3 cut(s) 43, 314, 598
Psp6I CCWGG 2 cut(s) 354, 709
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 2 cut(s) 354, 709
PspN4I GGNNCC 3 cut(s) 6, 785, 786
PspOMI GGGCCC 1 cut(s) 784
PspPI GGNCC 3 cut(s) 738, 784, 785
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 2 cut(s) 4, 869
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 622, 668, 681
Sau96I GGNCC 3 cut(s) 738, 784, 785
SchI GAGTC 3 cut(s) 43, 314, 599
ScrFI CCNGG 2 cut(s) 356, 711
SduI GDGCHC 2 cut(s) 124, 788
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 738
SmlI CTYRAG 3 cut(s) 254, 844, 865
SmoI CTYRAG 3 cut(s) 254, 844, 865
Sse9I AATT 6 cut(s) 107, 280, 435, 455, 770, 918
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 886
SspMI CTAG 1 cut(s) 660
StuI AGGCCT 1 cut(s) 709
StyD4I CCNGG 2 cut(s) 354, 709
StyI CCWWGG 2 cut(s) 273, 750
TaiI ACGT 2 cut(s) 293, 537
TaqI TCGA 6 cut(s) 60, 136, 318, 459, 477, 482
TasI AATT 6 cut(s) 107, 280, 435, 455, 770, 918
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 456
TseI GCWGC 3 cut(s) 621, 667, 680
TspDTI ATGAA 5 cut(s) 85, 134, 634, 717, 930
TspRI CASTG 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 738
XapI RAATTY 2 cut(s) 435, 455
XcmI CCANNNNNNNNNTGG 3 cut(s) 185, 271, 748
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.