Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005327.1

Orthogroup ID

OG0010507

Physical Location & Seq

Genomic Coordinates Reverse (-)

53527 .. 54595

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005327.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggatccttcttccaccaactctgtcaatggcttctattcctttctgactcgcgggatcgacgatctcgaaagggtctatctctccaacaacttcatgtcaatccaattcctccaaagggctctctcgcttcttcgatccttccactcccagctgattctgctcgtccaaaagcttcatttacccgtcggggacaagtggcttgatgagtacatggacgaaagctccaagctttgggaagcctctcatgtcctcaagtccgcaatctcttccatggagaactactacacctccggttgcaacatcacctccacgctcgactctcaccgcaatctaaccccgcagctctcccgccaggttgtgcgcgctatctcgggctgtcggcgcgaggctttcggattggaagaagaaaacagagcgatgatggagacccgaatcgagcctctgtcgctccgtttcgacgagagagtctccatcgaatcgaagctcaacgggttcaatggtttccggggagtgctgtacgcaatgagaaacgtgagcactctgctgctgatgatcttgctgtacggactggtgttctgctggccggaatcgagcttctgcagaggagggtacgaggggtgtttgatcttcggatcaccgttcatgatatcgacggcgagattgcagcagagggtggcggcggagatcgggcagaacagcgagaggccggggatactgatggacgagttccggcggtcgaagatggcgatggaggagctgagaggggagatggagaggaaggggacggcggcgatgatcatggattgggagagtgaaagtgggattagggagagagtggacaagttgagagggtgttttgggctgctgagatctggtgccgagaatatcagtagccaacttgatgatttcttggatgaaattgtggaagggaggaagaagcttttggacttttgcagtcataggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

322

Amino Acids

36.83

Weight (kDa)

5.87

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22030
fragaria_vesca	FvH4_5g38440
malus_domestica	MD04G1133000.v1.1 MD08G1173600.v1.1 MD12G1145700.v1.1 MD15G1360100.v1.1
prunus_persica	Prupe.1G507700_v2.0.a1
pyrus_communis	pycom04g12100 pycom08g14900 pycom09g17300 pycom10g23070 pycom15g32220
rosa_chinensis	RchiOBHm_Chr7g0240481
rosa_laevigata	RLG00000000676
rosa_multiflora	Rmu_sc0005327.1_g000010
rosa_roxburghii	Rroxscaffold_3G00219950
rosa_rugosa	Rorug07G0336500
rosa_samantha	Rh7AG490800 Rh7BG463400 Rh7CG506900
rosa_wichuraiana	Rw7G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	878
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccII	CGCG	3 cut(s)	54, 366, 387
AciI	CCGC	9 cut(s)	54, 261, 328, 341, 352, 680, 683, 736, 791
AclWI	GGATC	4 cut(s)	12, 65, 132, 643
AcoI	YGGCCR	1 cut(s)	584
AfaI	GTAC	4 cut(s)	212, 521, 566, 614
AfiI	CCNNNNNNNGG	2 cut(s)	118, 234
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	929, 961
AluBI	AGCT	9 cut(s)	154, 175, 225, 232, 346, 487, 597, 760, 943
AluI	AGCT	9 cut(s)	154, 175, 225, 232, 346, 487, 597, 760, 943
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	422, 475
AlwI	GGATC	4 cut(s)	12, 65, 132, 643
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	2 cut(s)	584, 707
ApeKI	GCWGC	4 cut(s)	343, 547, 667, 865
AspLEI	GCGC	3 cut(s)	366, 368, 387
AsuC2I	CCSGG	2 cut(s)	509, 711
AsuHPI	GGTGA	3 cut(s)	298, 317, 630
AvaI	CYCGRG	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	4 cut(s)	355, 534, 679, 852
BccI	CCATC	6 cut(s)	418, 482, 715, 739, 745, 766
BceAI	ACGGC	2 cut(s)	672, 804
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	708
BclI	TGATCA	1 cut(s)	798
BcnI	CCSGG	2 cut(s)	509, 711
BcoDI	GTCTC	2 cut(s)	422, 475
BfmI	CTRYAG	1 cut(s)	601
BfuI	GTATCC	1 cut(s)	708
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	6 cut(s)	344, 548, 668, 681, 792, 866
BlsI	GCNGC	6 cut(s)	345, 549, 669, 682, 793, 867
Bme1390I	CCNGG	3 cut(s)	356, 509, 711
BmeT110I	CYCGRG	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	6, 880
BmrFI	CCNGG	3 cut(s)	356, 509, 711
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	509, 711
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	273, 508, 710
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 275, 293, 305, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 234
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	273, 508, 710
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	2 cut(s)	118, 234
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	752, 860
BseNI	ACTGG	1 cut(s)	576
BsePI	GCGCGC	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	621, 770
BseXI	GCAGC	4 cut(s)	355, 534, 679, 852
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	3 cut(s)	54, 366, 387
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	2 cut(s)	586, 709
BshNI	GGYRCC	1 cut(s)	878
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	5 cut(s)	294, 508, 587, 710, 733
BslFI	GGGAC	2 cut(s)	206, 799
BslI	CCNNNNNNNGG	2 cut(s)	118, 234
BsmAI	GTCTC	2 cut(s)	422, 475
BsmFI	GGGAC	2 cut(s)	206, 799
BsnI	GGCC	2 cut(s)	586, 709
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	124, 542
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	9 cut(s)	54, 261, 328, 341, 352, 680, 683, 736, 791
BspANI	GGCC	2 cut(s)	586, 709
BspCNI	CTCAG	2 cut(s)	753, 861
BspFNI	CGCG	3 cut(s)	54, 366, 387
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	6, 880
BspMAI	CTGCAG	1 cut(s)	605
BspPI	GGATC	4 cut(s)	12, 65, 132, 643
BspT107I	GGYRCC	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	3 cut(s)	273, 508, 710
BssHII	GCGCGC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	366, 584
BstDEI	CTNAG	2 cut(s)	761, 869
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	922
BstFNI	CGCG	3 cut(s)	54, 366, 387
BstHHI	GCGC	3 cut(s)	366, 368, 387
BstMAI	GTCTC	2 cut(s)	422, 475
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 384, 448
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	354, 507, 709
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	3 cut(s)	54, 366, 387
BstV1I	GCAGC	4 cut(s)	355, 534, 679, 852
BstX2I	RGATCY	2 cut(s)	4, 872
BstYI	RGATCY	2 cut(s)	4, 872
BsuI	GTATCC	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	586, 709
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	3 cut(s)	434, 764, 809
BtsCI	GGATG	1 cut(s)	922
Cac8I	GCNNGC	2 cut(s)	366, 584
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	3 cut(s)	366, 368, 387
Csp6I	GTAC	4 cut(s)	211, 520, 565, 613
CviAII	CATG	6 cut(s)	97, 214, 248, 274, 646, 802
CviQI	GTAC	4 cut(s)	211, 520, 565, 613
DdeI	CTNAG	2 cut(s)	761, 869
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	6 cut(s)	100, 217, 251, 277, 649, 805
FaiI	YATR	7 cut(s)	98, 215, 249, 275, 647, 803, 963
FaqI	GGGAC	2 cut(s)	206, 799
FatI	CATG	6 cut(s)	96, 213, 247, 273, 645, 801
FauI	CCCGC	3 cut(s)	47, 348, 359
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	6 cut(s)	344, 548, 668, 681, 792, 866
FokI	GGATG	1 cut(s)	929
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	6 cut(s)	344, 548, 668, 681, 792, 866
GlaI	GCGC	3 cut(s)	365, 367, 386
GluI	GCNGC	6 cut(s)	344, 548, 668, 681, 792, 866
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	586, 709
HapII	CCGG	5 cut(s)	294, 508, 587, 710, 733
HhaI	GCGC	3 cut(s)	366, 368, 387
Hin1II	CATG	6 cut(s)	100, 217, 251, 277, 649, 805
Hin6I	GCGC	3 cut(s)	364, 366, 385
HinP1I	GCGC	3 cut(s)	364, 366, 385
HindIII	AAGCTT	3 cut(s)	173, 230, 941
HinfI	GANTC	7 cut(s)	49, 157, 320, 435, 468, 479, 590
HpaII	CCGG	5 cut(s)	294, 508, 587, 710, 733
HphI	GGTGA	3 cut(s)	298, 317, 630
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	3 cut(s)	48, 398, 635
Hpy188III	TCNNGA	2 cut(s)	68, 646
Hpy8I	GTNNAC	1 cut(s)	841
Hpy99I	CGWCG	4 cut(s)	65, 191, 464, 658
HpyAV	CCTTC	4 cut(s)	18, 151, 775, 923
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	4 cut(s)	300, 603, 667, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 384, 448
HpyF3I	CTNAG	2 cut(s)	761, 869
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	6 cut(s)	100, 217, 251, 277, 649, 805
HspAI	GCGC	3 cut(s)	364, 366, 385
Ksp22I	TGATCA	1 cut(s)	798
LmnI	GCTCC	3 cut(s)	230, 456, 757
Lsp1109I	GCAGC	4 cut(s)	355, 534, 679, 852
MaeII	ACGT	1 cut(s)	534
MboII	GAAGA	8 cut(s)	3, 125, 261, 416, 419, 622, 754, 949
MflI	RGATCY	2 cut(s)	4, 872
MhlI	GDGCHC	2 cut(s)	124, 542
MluCI	AATT	2 cut(s)	107, 921
MlyI	GAGTC	3 cut(s)	43, 314, 477
MmeI	TCCRAC	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	5 cut(s)	294, 508, 587, 710, 733
MspR9I	CCNGG	3 cut(s)	356, 509, 711
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	3 cut(s)	54, 366, 387
MwoI	GCNNNNNNNGC	3 cut(s)	160, 384, 448
NciI	CCSGG	2 cut(s)	509, 711
NcoI	CCATGG	1 cut(s)	273
NlaIII	CATG	6 cut(s)	100, 217, 251, 277, 649, 805
NlaIV	GGNNCC	2 cut(s)	6, 880
NmeAIII	GCCGAG	1 cut(s)	907
PagI	TCATGA	1 cut(s)	645
PauI	GCGCGC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 746
PfeI	GAWTC	4 cut(s)	157, 435, 479, 590
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	6 cut(s)	345, 549, 669, 682, 793, 867
PleI	GAGTC	3 cut(s)	43, 314, 476
PpsI	GAGTC	3 cut(s)	43, 314, 476
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	6, 880
PstI	CTGCAG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	4, 872
PteI	GCGCGC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	4 cut(s)	212, 521, 566, 614
RsaNI	GTAC	4 cut(s)	211, 520, 565, 613
SatI	GCNGC	6 cut(s)	344, 548, 668, 681, 792, 866
SchI	GAGTC	3 cut(s)	43, 314, 477
ScrFI	CCNGG	3 cut(s)	356, 509, 711
SduI	GDGCHC	2 cut(s)	124, 542
SfcI	CTRYAG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	107, 921
SsiI	CCGC	9 cut(s)	54, 261, 328, 341, 352, 680, 683, 736, 791
StyD4I	CCNGG	3 cut(s)	354, 507, 709
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	537
TasI	AATT	2 cut(s)	107, 921
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	683, 794
TfiI	GAWTC	4 cut(s)	157, 435, 479, 590
TseI	GCWGC	4 cut(s)	343, 547, 667, 865
TspDTI	ATGAA	4 cut(s)	85, 167, 634, 933
TspGWI	ACGGA	2 cut(s)	443, 582
Van91I	CCANNNNNTGG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.