Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010507

Physical Location & Seq

Genomic Coordinates Forward (+)

28430435 .. 28432388

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATCCTTCTTCCACCAACTCTGTCAATGGCTTCTACTCCTTTCTGACTCGTGGGATCGACGATCTCGAAAGGGTCTATCTTTCCAACAACTTCATGTCAATCCAGTTCCTCCAAAGGGCTCTCTCCCTTCTCCGATCCTTCCACTCCCAGCTCACTCTTCTCGTCCAAAAGCTTCATTTACCCGTCGGGGACAAGTGGCTTGATGAGTACATGGACGAAAGCTCCAAGCTTTGGGAAGCCTCTCATGTCCTCAAGTCCGCTATCTCTTCCATGGAGAATTACTACACCTCCGGCTGTAACCTCACCTCCACTCTCGACTCTCACCGCAATCTAACCCCGCAGCTCTCCCGCCAGGTCGTGCGTGCTATCTCGGGGTGTCGGCGCGAGGCTTTTGGATTGGAAGAAGAAAACAGAGCGCTGATGGAGACACGAATCGAGCCTTTGTCGCTGCGTTTCGACGAGAGAGTCTCTATCGAGTCGAAACTGAACGGGTTCAACGGGTTCCGGGGTGTTCTGTACGCAATGAGAAACGTCAGCACTCTTCTGCTGACGATCCTGCTGTACGGGCTGGTGTTCTGCTGGCCGGAATCGAGCTTCTGCAGAGGAGGGTACGAGCAGGGGTGTATGATATTCGGATCACCGTTCATGATATCGACGGCGAGATTGCAGCAGAGGGTGGCGGGGGAGATCGGGGGGATGAGTGAGAGGAGGCCGGGGATATTGATGGATGAGTTTAGAAGGTCGAAGATGGCGATGGAGGAGCTGAGAGGGGAGATGGAGAGGAAGGGGACGATGATCATGGATTGGGAGAATGAAAGTGGGATTAGGGAGAGAGTGGACAAGTTGAGAGGGTGCTTTGGGGTGTTGAGATCTGGTGCGGAGAATATCAGTAGCCAACTTGATGATTTCTTGGATGAAATTGTGGAAGGGAGGAAGAAGCTCTTGGACTTTTGCAGTCATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

323

Amino Acids

36.88

Weight (kDa)

6.06

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22030
fragaria_vesca	FvH4_5g38440
malus_domestica	MD04G1133000.v1.1 MD08G1173600.v1.1 MD12G1145700.v1.1 MD15G1360100.v1.1
prunus_persica	Prupe.1G507700_v2.0.a1
pyrus_communis	pycom04g12100 pycom08g14900 pycom09g17300 pycom10g23070 pycom15g32220
rosa_chinensis	RchiOBHm_Chr7g0240481
rosa_laevigata	RLG00000000676
rosa_multiflora	Rmu_sc0005327.1_g000010
rosa_roxburghii	Rroxscaffold_3G00219950
rosa_rugosa	Rorug07G0336500
rosa_samantha	Rh7AG490800 Rh7BG463400 Rh7CG506900
rosa_wichuraiana	Rw7G041130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	234
AccII	CGCG	1 cut(s)	387
AciI	CCGC	6 cut(s)	261, 328, 341, 352, 683, 881
AclWI	GGATC	5 cut(s)	12, 65, 132, 550, 646
AcoI	YGGCCR	1 cut(s)	584
AfaI	GTAC	4 cut(s)	212, 521, 566, 614
AfeI	AGCGCT	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	118, 234
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	929, 961
AluBI	AGCT	8 cut(s)	154, 175, 225, 232, 346, 597, 766, 943
AluI	AGCT	8 cut(s)	154, 175, 225, 232, 346, 597, 766, 943
Alw26I	GTCTC	2 cut(s)	422, 475
AlwI	GGATC	5 cut(s)	12, 65, 132, 550, 646
Ama87I	CYCGRG	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	420
AoxI	GGCC	2 cut(s)	584, 713
ApeKI	GCWGC	3 cut(s)	343, 451, 670
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	2 cut(s)	387, 421
AsuC2I	CCSGG	2 cut(s)	509, 717
AsuHPI	GGTGA	3 cut(s)	298, 317, 633
AvaI	CYCGRG	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	355, 438, 682
BccI	CCATC	5 cut(s)	418, 721, 745, 751, 772
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	798
BcnI	CCSGG	2 cut(s)	509, 717
BcoDI	GTCTC	2 cut(s)	422, 475
BfmI	CTRYAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	422
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	3 cut(s)	344, 452, 671
BlsI	GCNGC	3 cut(s)	345, 453, 672
Bme1390I	CCNGG	3 cut(s)	356, 509, 717
BmeT110I	CYCGRG	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	6, 506
BmrFI	CCNGG	3 cut(s)	356, 509, 717
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	509, 717
BsaJI	CCNNGG	3 cut(s)	273, 508, 716
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 275, 293, 305, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 234
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	273, 508, 716
BseGI	GGATG	3 cut(s)	705, 736, 922
BseLI	CCNNNNNNNGG	2 cut(s)	118, 234
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	621, 724, 776
BseXI	GCAGC	3 cut(s)	355, 438, 682
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	586, 715
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	4 cut(s)	294, 508, 587, 716
BslFI	GGGAC	2 cut(s)	206, 805
BslI	CCNNNNNNNGG	2 cut(s)	118, 234
BsmAI	GTCTC	2 cut(s)	422, 475
BsmFI	GGGAC	2 cut(s)	206, 805
BsnI	GGCC	2 cut(s)	586, 715
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	6 cut(s)	261, 328, 341, 352, 683, 881
BspANI	GGCC	2 cut(s)	586, 715
BspCNI	CTCAG	1 cut(s)	759
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	6, 506
BspMAI	CTGCAG	1 cut(s)	605
BspPI	GGATC	5 cut(s)	12, 65, 132, 550, 646
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	273, 508, 716
BssMI	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	645
Bst6I	CTCTTC	3 cut(s)	165, 274, 549
BstC8I	GCNNGC	2 cut(s)	366, 584
BstDEI	CTNAG	1 cut(s)	767
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	3 cut(s)	705, 736, 922
BstFNI	CGCG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	387, 421
BstKTI	GATC	9 cut(s)	7, 60, 67, 140, 558, 641, 693, 801, 875
BstMAI	GTCTC	2 cut(s)	422, 475
BstMBI	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 568
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	354, 507, 715
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	355, 438, 682
BstX2I	RGATCY	2 cut(s)	4, 872
BstYI	RGATCY	2 cut(s)	4, 872
BsuRI	GGCC	2 cut(s)	586, 715
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	3 cut(s)	705, 736, 922
Cac8I	GCNNGC	2 cut(s)	366, 584
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	2 cut(s)	387, 421
Csp6I	GTAC	4 cut(s)	211, 520, 565, 613
CviAII	CATG	6 cut(s)	97, 214, 248, 274, 649, 802
CviQI	GTAC	4 cut(s)	211, 520, 565, 613
DdeI	CTNAG	1 cut(s)	767
DpnI	GATC	9 cut(s)	6, 59, 66, 139, 557, 640, 692, 800, 874
DpnII	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	165, 274, 549
EarI	CTCTTC	3 cut(s)	165, 274, 549
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	6 cut(s)	100, 217, 251, 277, 652, 805
FaiI	YATR	8 cut(s)	98, 215, 249, 275, 629, 650, 803, 963
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	2 cut(s)	206, 805
FatI	CATG	6 cut(s)	96, 213, 247, 273, 648, 801
FauI	CCCGC	3 cut(s)	348, 359, 676
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	3 cut(s)	344, 452, 671
FokI	GGATG	3 cut(s)	712, 743, 929
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	344, 452, 671
GlaI	GCGC	2 cut(s)	386, 420
GluI	GCNGC	3 cut(s)	344, 452, 671
GsaI	CCCAGC	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	586, 715
HapII	CCGG	4 cut(s)	294, 508, 587, 716
HhaI	GCGC	2 cut(s)	387, 421
Hin1II	CATG	6 cut(s)	100, 217, 251, 277, 652, 805
Hin6I	GCGC	2 cut(s)	385, 419
HinP1I	GCGC	2 cut(s)	385, 419
HindIII	AAGCTT	2 cut(s)	173, 230
HinfI	GANTC	6 cut(s)	49, 320, 435, 468, 479, 590
HpaII	CCGG	4 cut(s)	294, 508, 587, 716
HphI	GGTGA	3 cut(s)	298, 317, 633
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	3 cut(s)	48, 137, 638
Hpy188III	TCNNGA	3 cut(s)	68, 317, 649
Hpy8I	GTNNAC	1 cut(s)	841
Hpy99I	CGWCG	4 cut(s)	65, 191, 464, 661
HpyAV	CCTTC	6 cut(s)	18, 140, 151, 735, 781, 923
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	603, 670, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 568
HpyF3I	CTNAG	1 cut(s)	767
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	6 cut(s)	100, 217, 251, 277, 652, 805
HspAI	GCGC	2 cut(s)	385, 419
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
LmnI	GCTCC	2 cut(s)	230, 763
Lsp1109I	GCAGC	3 cut(s)	355, 438, 682
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	9 cut(s)	6, 59, 66, 139, 557, 640, 692, 800, 874
MboI	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
MboII	GAAGA	8 cut(s)	3, 152, 261, 416, 419, 536, 760, 949
MflI	RGATCY	2 cut(s)	4, 872
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	280, 921
MlyI	GAGTC	4 cut(s)	43, 314, 477, 488
MmeI	TCCRAC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	494
MspI	CCGG	4 cut(s)	294, 508, 587, 716
MspR9I	CCNGG	3 cut(s)	356, 509, 717
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	448, 568
NciI	CCSGG	2 cut(s)	509, 717
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
NlaIII	CATG	6 cut(s)	100, 217, 251, 277, 652, 805
NlaIV	GGNNCC	2 cut(s)	6, 506
PagI	TCATGA	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 752
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	435, 590
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	345, 453, 672
PleI	GAGTC	4 cut(s)	43, 314, 476, 487
PpsI	GAGTC	4 cut(s)	43, 314, 476, 487
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	6, 506
PstI	CTGCAG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	4, 872
RsaI	GTAC	4 cut(s)	212, 521, 566, 614
RsaNI	GTAC	4 cut(s)	211, 520, 565, 613
SatI	GCNGC	3 cut(s)	344, 452, 671
Sau3AI	GATC	9 cut(s)	4, 57, 64, 137, 555, 638, 690, 798, 872
SchI	GAGTC	4 cut(s)	43, 314, 477, 488
ScrFI	CCNGG	3 cut(s)	356, 509, 717
SduI	GDGCHC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	280, 921
SsiI	CCGC	6 cut(s)	261, 328, 341, 352, 683, 881
StyD4I	CCNGG	3 cut(s)	354, 507, 715
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	645
TaiI	ACGT	1 cut(s)	537
TasI	AATT	2 cut(s)	280, 921
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	435, 590
TseI	GCWGC	3 cut(s)	343, 451, 670
TspDTI	ATGAA	5 cut(s)	85, 167, 637, 831, 933
Van91I	CCANNNNNTGG	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.