MD15G1360100.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010507
Physical Location & Seq
Reverse (-)
43381255 .. 43382354
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1360100.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGATCCTTCATCTACCAACTCTGTCAATGGCTTCTACTCGTTTCTGACTCGAGGGATCGACGATCTCGAAAGGGTTTATCTTTCCAACAACTTTATGTCAATCCAATTCCTCCAAAGGGCTCTTTCCCTTCTTCGATCTTTCCACTCCCAGCTGACCCTTCTCGTCCAGAAGCTCCATTTGCCCGTCGGAGACAAGTGGCTCGACGAGTACATGGACGAAAGCTCCAAGCTTTGGGAAGCCTGCCATGTCCTCAAGTCCGCCGTCTCCGCCATGGAGAATTACTACACTTCCGGCCTCAACATCACCTCCACCCTCGACTCCCACCGCCATCTCACTCCCCAGCTCTCTCGCCAGGTGGTGCGCGCGATTTCTGGGTGTCGGCGACAGGCGTTCGGATTGGAGGAAGAGAACAGGGGGCTGATGGAGACGAGAATCCAGCCGCTGTCGCTCAAATTCGACGAAAGGGTCTCCATCGAATCGAAGCTCAATGGGTTTAATGGGTTCAGGGGAGTCCTGTACGCAATGAGGAACGTGAGCTCGCTGCTGCTAATTATCCTGCTGTACGGGCTGGTGTTCTGCTGGCCGGAGGAGGAGTCAAGCTTCTGCAGGGGAGGGTACAACGAAGGGTGCGTGATCTTCGGATCGTCGTTCATGGTATCGACGGCGAGGCTGCAGCAGAGGGTTGCGGCGGAGATCAGGCAGATCAGGGAGAGGCCGGGGGTTCTGATGTGGGAGTTCAGGAGGTCGAAGGCGGCGATGGAGGAGCTGAGGGGGGATCTGGAGAGGAGGGGCCCACAGGGAGTGGTGGAGTGGGAGGAGGAGGGTGGCGGCGGCGGCGGCGGGATTAGGGAGGGAGTGGACAACTTGAGAGAGTGTTTTGGGGTGTTGAGATCCGGTGCGGAGAATATTGTGAACCAACTTGATGATTTCTTTGATGAAATTGTTGAGGGGAGGAAGAAGCTTTTGGACTTTTGCAGTCATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

330

Amino Acids

37.43

Weight (kDa)

5.81

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 234
AccII CGCG 2 cut(s) 366, 368
AclWI GGATC 5 cut(s) 12, 65, 652, 786, 888
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 4 cut(s) 212, 521, 566, 620
AfiI CCNNNNNNNGG 2 cut(s) 118, 234
AjnI CCWGG 1 cut(s) 354
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 4 cut(s) 186, 271, 422, 475
AlwI GGATC 5 cut(s) 12, 65, 652, 786, 888
AlwNI CAGNNNCTG 1 cut(s) 445
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 4 cut(s) 295, 584, 716, 793
ApaI GGGCCC 1 cut(s) 797
ApeKI GCWGC 4 cut(s) 544, 547, 673, 676
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 2 cut(s) 366, 368
AspS9I GGNCC 2 cut(s) 793, 794
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 797
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 124, 542, 797
Bbv12I GWGCWC 1 cut(s) 542
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 4 cut(s) 531, 534, 660, 688
BccI CCATC 4 cut(s) 339, 418, 482, 754
BceAI ACGGC 2 cut(s) 248, 681
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 186, 271, 422, 475
BfmI CTRYAG 2 cut(s) 607, 674
Bme1390I CCNGG 2 cut(s) 356, 720
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 793, 794
BmiI GGNNCC 3 cut(s) 6, 794, 795
BmrFI CCNGG 2 cut(s) 356, 720
BpmI CTGGAG 1 cut(s) 803
Bpu10I CCTNAGC 1 cut(s) 770
BpuEI CTTGAG 2 cut(s) 239, 889
BpuMI CCSGG 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 273, 719
BsaWI WCCGGW 1 cut(s) 896
BsaXI ACNNNNNCTCC 6 cut(s) 209, 239, 293, 323, 581, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 234
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 2 cut(s) 273, 719
BseLI CCNNNNNNNGG 2 cut(s) 118, 234
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 761
BsePI GCGCGC 1 cut(s) 364
BseRI GAGGAG 6 cut(s) 605, 608, 779, 802, 833, 836
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 4 cut(s) 531, 534, 660, 688
BseYI CCCAGC 2 cut(s) 150, 342
Bsh1236I CGCG 2 cut(s) 366, 368
BshFI GGCC 4 cut(s) 297, 586, 718, 795
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 4 cut(s) 294, 587, 719, 897
BslI CCNNNNNNNGG 2 cut(s) 118, 234
BsmAI GTCTC 4 cut(s) 186, 271, 422, 475
BsmBI CGTCTC 2 cut(s) 271, 422
BsnI GGCC 4 cut(s) 297, 586, 718, 795
Bso31I GGTCTC 1 cut(s) 475
BsoBI CYCGRG 1 cut(s) 51
Bsp120I GGGCCC 1 cut(s) 793
Bsp1286I GDGCHC 3 cut(s) 124, 542, 797
Bsp19I CCATGG 1 cut(s) 273
BspANI GGCC 4 cut(s) 297, 586, 718, 795
BspCNI CTCAG 1 cut(s) 762
BspFNI CGCG 2 cut(s) 366, 368
BspLI GGNNCC 3 cut(s) 6, 794, 795
BspMAI CTGCAG 2 cut(s) 611, 678
BspPI GGATC 5 cut(s) 12, 65, 652, 786, 888
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 273, 719
BssHII GCGCGC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 4 cut(s) 244, 366, 542, 584
BstDEI CTNAG 1 cut(s) 770
BstDSI CCRYGG 1 cut(s) 273
BstFNI CGCG 2 cut(s) 366, 368
BstHHI GCGC 2 cut(s) 366, 368
BstMAI GTCTC 4 cut(s) 186, 271, 422, 475
BstMWI GCNNNNNNNGC 6 cut(s) 181, 269, 448, 568, 837, 840
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 354, 718
BstSFI CTRYAG 2 cut(s) 607, 674
BstSLI GKGCMC 1 cut(s) 797
BstUI CGCG 2 cut(s) 366, 368
BstV1I GCAGC 4 cut(s) 531, 534, 660, 688
BstX2I RGATCY 3 cut(s) 4, 778, 893
BstYI RGATCY 3 cut(s) 4, 778, 893
BsuRI GGCC 4 cut(s) 297, 586, 718, 795
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 773
Cac8I GCNNGC 4 cut(s) 244, 366, 542, 584
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 2 cut(s) 366, 368
Cfr13I GGNCC 2 cut(s) 793, 794
Csp6I GTAC 4 cut(s) 211, 520, 565, 619
CviAII CATG 4 cut(s) 214, 248, 274, 655
CviQI GTAC 4 cut(s) 211, 520, 565, 619
DdeI CTNAG 1 cut(s) 770
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 3 cut(s) 250, 259, 707
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 3 cut(s) 124, 542, 797
Eco31I GGTCTC 1 cut(s) 475
Eco53kI GAGCTC 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 3 cut(s) 124, 542, 797
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 2 cut(s) 271, 422
FaeI CATG 4 cut(s) 217, 251, 277, 658
FaiI YATR 6 cut(s) 98, 215, 249, 275, 656, 984
FatI CATG 4 cut(s) 213, 247, 273, 654
FauI CCCGC 1 cut(s) 836
FriOI GRGCYC 3 cut(s) 124, 542, 797
GlaI GCGC 2 cut(s) 365, 367
GsaI CCCAGC 2 cut(s) 154, 346
GsuI CTGGAG 1 cut(s) 803
HaeIII GGCC 4 cut(s) 297, 586, 718, 795
HapII CCGG 4 cut(s) 294, 587, 719, 897
HhaI GCGC 2 cut(s) 366, 368
Hin1II CATG 4 cut(s) 217, 251, 277, 658
Hin6I GCGC 2 cut(s) 364, 366
HinP1I GCGC 2 cut(s) 364, 366
HindIII AAGCTT 3 cut(s) 230, 601, 962
HinfI GANTC 6 cut(s) 49, 320, 435, 479, 513, 596
HpaII CCGG 4 cut(s) 294, 587, 719, 897
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 862, 916
Hpy188I TCNGA 5 cut(s) 48, 191, 398, 644, 729
Hpy188III TCNNGA 4 cut(s) 68, 169, 742, 782
Hpy8I GTNNAC 2 cut(s) 862, 916
Hpy99I CGWCG 6 cut(s) 65, 191, 209, 464, 652, 667
HpyAV CCTTC 5 cut(s) 18, 140, 170, 620, 745
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 3 cut(s) 609, 676, 978
HpyF10VI GCNNNNNNNGC 6 cut(s) 181, 269, 448, 568, 837, 840
HpyF3I CTNAG 1 cut(s) 770
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 4 cut(s) 217, 251, 277, 658
HspAI GCGC 2 cut(s) 364, 366
LmnI GCTCC 3 cut(s) 180, 230, 766
Lsp1109I GCAGC 4 cut(s) 531, 534, 660, 688
MaeII ACGT 1 cut(s) 534
MboII GAAGA 4 cut(s) 125, 419, 631, 970
MflI RGATCY 3 cut(s) 4, 778, 893
MhlI GDGCHC 3 cut(s) 124, 542, 797
MluCI AATT 5 cut(s) 107, 280, 455, 552, 942
MlyI GAGTC 4 cut(s) 43, 314, 522, 605
MmeI TCCRAC 2 cut(s) 111, 169
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 154, 445
MspI CCGG 4 cut(s) 294, 587, 719, 897
MspR9I CCNGG 2 cut(s) 356, 720
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 2 cut(s) 366, 368
MwoI GCNNNNNNNGC 6 cut(s) 181, 269, 448, 568, 837, 840
NciI CCSGG 1 cut(s) 720
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 4 cut(s) 217, 251, 277, 658
NlaIV GGNNCC 3 cut(s) 6, 794, 795
PaeR7I CTCGAG 1 cut(s) 51
PauI GCGCGC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 630, 755
PfeI GAWTC 2 cut(s) 435, 479
PflMI CCANNNNNTGG 1 cut(s) 234
PleI GAGTC 4 cut(s) 43, 314, 521, 604
PpsI GAGTC 4 cut(s) 43, 314, 521, 604
Psp124BI GAGCTC 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 2 cut(s) 150, 342
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 6, 794, 795
PspOMI GGGCCC 1 cut(s) 793
PspPI GGNCC 2 cut(s) 793, 794
PspXI VCTCGAGB 1 cut(s) 51
PstI CTGCAG 2 cut(s) 611, 678
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 3 cut(s) 4, 778, 893
PteI GCGCGC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 4 cut(s) 212, 521, 566, 620
RsaNI GTAC 4 cut(s) 211, 520, 565, 619
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 1 cut(s) 498
Sau96I GGNCC 2 cut(s) 793, 794
SchI GAGTC 4 cut(s) 43, 314, 522, 605
ScrFI CCNGG 2 cut(s) 356, 720
SduI GDGCHC 3 cut(s) 124, 542, 797
SfcI CTRYAG 2 cut(s) 607, 674
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 51, 254, 868
SmoI CTYRAG 3 cut(s) 51, 254, 868
Sse9I AATT 5 cut(s) 107, 280, 455, 552, 942
SspI AATATT 1 cut(s) 910
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 2 cut(s) 354, 718
StyI CCWWGG 1 cut(s) 273
TaiI ACGT 1 cut(s) 537
TasI AATT 5 cut(s) 107, 280, 455, 552, 942
TatI WGTACW 1 cut(s) 210
TauI GCSGC 7 cut(s) 445, 692, 758, 834, 837, 840, 843
TfiI GAWTC 2 cut(s) 435, 479
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseI GCWGC 4 cut(s) 544, 547, 673, 676
TspDTI ATGAA 2 cut(s) 643, 954
Van91I CCANNNNNTGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.