Rh7BG463400

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010507
Physical Location & Seq
Forward (+)
54925322 .. 54927459
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG463400.1

Sequence Viewer

Length: 969 bp
ATGGATCCTTCTTCCACCAACTCTGTCAATGGCTTCTATTCCTTTCTGACTCGTGGGATCGACGATCTCGAAAGGGTCTATCTCTCCAACAACTTCATGTCAATCCAATTCCTCCAAAGGGCTCTCTCGCTTCTTCGATCCTTCCACTCCCAGCTGACTCTGCTCGTCCAAAAGCTTCATTTACCCGTCGGGGACAAGTGGCTTGATGAGTACATGGACGAAAGCTCCAAGCTTTGGGAAGCCTCTCATGTCCTCAAGTCCGCAATCTCTTCCATGGAGAACTACTACACCTCCGGTTGCAACATCACCTCCACGCTCGACTCTCACCGCAATCTAACCCCGCAGCTCTCCCGCCAGGTTGCGCGCGCTATCTCGGGCTGTCGGCGCGAGGCTTTCGGATTGGAAGAAGAAAACAGAGCGATGATGGAGACCCGAATCGAGCCTCTGTCGCTCCGTTTCGACGAGAGAGTCTCCATCGAATCGAAGCTCAACGGGTTCAATGGTTTCCGGGGAGTGCTGTACGCAATGAGAAACGTGAGCACACTGCTGCTGATGATCTTGCTGTACGGACTGGTGTTCTGCTGGCCGGAATCGAGCTTCTGCAGAGGAGGGTACGAGGGGTGTTTGATCTTCGGATCACCGTTCATGATATCGACGGCGAGATTGCAGCAGAGGGTGGCGGCGGAGATCGGGCAGAACAGCGGGAGGCCGGGGATACTGATGGACGAGTTCCGGCGGTCGAAGATGGCGATGGAGGAGCTGAGAGGGGAGATGGAGAGGAAGGGGACGGCGGCGATGATCATGGATTGGGAGAGTGAAAGTGGGATTAGGGAGAGAGTGGACAAGTTGAGAGGGTGTTTTGGGGTGTTGAGATCTGGTGCCGAGAATATCAGTAGCCAACTTGATGATTTCTTGGATGAAATTGTGGAAGGGAGGAAGAAGCTTTTGGACTTTTGCAGTCATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

322

Amino Acids

36.71

Weight (kDa)

6.05

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 234
AccII CGCG 3 cut(s) 364, 366, 387
AciI CCGC 9 cut(s) 261, 328, 341, 352, 680, 683, 702, 736, 791
AclWI GGATC 4 cut(s) 12, 65, 132, 643
AcoI YGGCCR 1 cut(s) 584
AfaI GTAC 4 cut(s) 212, 521, 566, 614
AfiI CCNNNNNNNGG 2 cut(s) 118, 234
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 1 cut(s) 354
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 9 cut(s) 154, 175, 225, 232, 346, 487, 597, 760, 943
AluI AGCT 9 cut(s) 154, 175, 225, 232, 346, 487, 597, 760, 943
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 2 cut(s) 422, 475
AlwI GGATC 4 cut(s) 12, 65, 132, 643
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 2 cut(s) 584, 707
ApeKI GCWGC 3 cut(s) 343, 547, 667
AspLEI GCGC 4 cut(s) 364, 366, 368, 387
AsuC2I CCSGG 2 cut(s) 509, 711
AsuHPI GGTGA 3 cut(s) 298, 317, 630
AvaI CYCGRG 1 cut(s) 373
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 878
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 355, 534, 679
BccI CCATC 6 cut(s) 418, 482, 715, 739, 745, 766
BceAI ACGGC 2 cut(s) 672, 804
BciT130I CCWGG 1 cut(s) 356
BciVI GTATCC 1 cut(s) 708
BclI TGATCA 1 cut(s) 798
BcnI CCSGG 2 cut(s) 509, 711
BcoDI GTCTC 2 cut(s) 422, 475
BfmI CTRYAG 1 cut(s) 601
BfuI GTATCC 1 cut(s) 708
BglII AGATCT 1 cut(s) 872
BisI GCNGC 5 cut(s) 344, 548, 668, 681, 792
BlsI GCNGC 5 cut(s) 345, 549, 669, 682, 793
Bme1390I CCNGG 3 cut(s) 356, 509, 711
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 6, 880
BmrFI CCNGG 3 cut(s) 356, 509, 711
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 509, 711
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 273, 508, 710
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 6 cut(s) 209, 239, 275, 293, 305, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 234
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 3 cut(s) 273, 508, 710
BseGI GGATG 1 cut(s) 922
BseLI CCNNNNNNNGG 2 cut(s) 118, 234
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 1 cut(s) 576
BsePI GCGCGC 2 cut(s) 362, 364
BseRI GAGGAG 2 cut(s) 621, 770
BseXI GCAGC 3 cut(s) 355, 534, 679
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 3 cut(s) 364, 366, 387
Bsh1285I CGRYCG 1 cut(s) 740
BshFI GGCC 2 cut(s) 586, 709
BshNI GGYRCC 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 5 cut(s) 294, 508, 587, 710, 733
BslFI GGGAC 2 cut(s) 206, 799
BslI CCNNNNNNNGG 2 cut(s) 118, 234
BsmAI GTCTC 2 cut(s) 422, 475
BsmFI GGGAC 2 cut(s) 206, 799
BsnI GGCC 2 cut(s) 586, 709
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 124, 542
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 9 cut(s) 261, 328, 341, 352, 680, 683, 702, 736, 791
BspANI GGCC 2 cut(s) 586, 709
BspCNI CTCAG 1 cut(s) 753
BspFNI CGCG 3 cut(s) 364, 366, 387
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 6, 880
BspMAI CTGCAG 1 cut(s) 605
BspPI GGATC 4 cut(s) 12, 65, 132, 643
BspT107I GGYRCC 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 3 cut(s) 273, 508, 710
BssHII GCGCGC 2 cut(s) 362, 364
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 364, 366, 584
BstDEI CTNAG 1 cut(s) 761
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 922
BstFNI CGCG 3 cut(s) 364, 366, 387
BstHHI GCGC 4 cut(s) 364, 366, 368, 387
BstMAI GTCTC 2 cut(s) 422, 475
BstMCI CGRYCG 1 cut(s) 740
BstMWI GCNNNNNNNGC 3 cut(s) 160, 384, 448
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 3 cut(s) 354, 507, 709
BstSFI CTRYAG 1 cut(s) 601
BstUI CGCG 3 cut(s) 364, 366, 387
BstV1I GCAGC 3 cut(s) 355, 534, 679
BstX2I RGATCY 2 cut(s) 4, 872
BstYI RGATCY 2 cut(s) 4, 872
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 2 cut(s) 586, 709
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 3 cut(s) 434, 764, 809
BtsCI GGATG 1 cut(s) 922
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 3 cut(s) 364, 366, 584
CciI TCATGA 1 cut(s) 645
CfoI GCGC 4 cut(s) 364, 366, 368, 387
Csp6I GTAC 4 cut(s) 211, 520, 565, 613
CviAII CATG 6 cut(s) 97, 214, 248, 274, 646, 802
CviQI GTAC 4 cut(s) 211, 520, 565, 613
DdeI CTNAG 1 cut(s) 761
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 6 cut(s) 100, 217, 251, 277, 649, 805
FaiI YATR 7 cut(s) 98, 215, 249, 275, 647, 803, 963
FaqI GGGAC 2 cut(s) 206, 799
FatI CATG 6 cut(s) 96, 213, 247, 273, 645, 801
FauI CCCGC 3 cut(s) 348, 359, 695
FbaI TGATCA 1 cut(s) 798
Fnu4HI GCNGC 5 cut(s) 344, 548, 668, 681, 792
FokI GGATG 1 cut(s) 929
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 344, 548, 668, 681, 792
GlaI GCGC 4 cut(s) 363, 365, 367, 386
GluI GCNGC 5 cut(s) 344, 548, 668, 681, 792
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 2 cut(s) 586, 709
HapII CCGG 5 cut(s) 294, 508, 587, 710, 733
HhaI GCGC 4 cut(s) 364, 366, 368, 387
Hin1II CATG 6 cut(s) 100, 217, 251, 277, 649, 805
Hin6I GCGC 4 cut(s) 362, 364, 366, 385
HinP1I GCGC 4 cut(s) 362, 364, 366, 385
HindIII AAGCTT 3 cut(s) 173, 230, 941
HinfI GANTC 7 cut(s) 49, 157, 320, 435, 468, 479, 590
HpaII CCGG 5 cut(s) 294, 508, 587, 710, 733
HphI GGTGA 3 cut(s) 298, 317, 630
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 3 cut(s) 48, 398, 635
Hpy188III TCNNGA 2 cut(s) 68, 646
Hpy8I GTNNAC 1 cut(s) 841
Hpy99I CGWCG 4 cut(s) 65, 191, 464, 658
HpyAV CCTTC 4 cut(s) 18, 151, 775, 923
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 300, 603, 667, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 384, 448
HpyF3I CTNAG 1 cut(s) 761
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 6 cut(s) 100, 217, 251, 277, 649, 805
HspAI GCGC 4 cut(s) 362, 364, 366, 385
Ksp22I TGATCA 1 cut(s) 798
LmnI GCTCC 3 cut(s) 230, 456, 757
Lsp1109I GCAGC 3 cut(s) 355, 534, 679
MaeII ACGT 1 cut(s) 534
MboII GAAGA 8 cut(s) 3, 125, 261, 416, 419, 622, 754, 949
MflI RGATCY 2 cut(s) 4, 872
MhlI GDGCHC 2 cut(s) 124, 542
MluCI AATT 2 cut(s) 107, 921
MlyI GAGTC 4 cut(s) 43, 151, 314, 477
MmeI TCCRAC 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 154, 702
MspI CCGG 5 cut(s) 294, 508, 587, 710, 733
MspR9I CCNGG 3 cut(s) 356, 509, 711
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 3 cut(s) 364, 366, 387
MwoI GCNNNNNNNGC 3 cut(s) 160, 384, 448
NciI CCSGG 2 cut(s) 509, 711
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 6 cut(s) 100, 217, 251, 277, 649, 805
NlaIV GGNNCC 2 cut(s) 6, 880
NmeAIII GCCGAG 1 cut(s) 907
PagI TCATGA 1 cut(s) 645
PauI GCGCGC 2 cut(s) 362, 364
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 746
PfeI GAWTC 3 cut(s) 435, 479, 590
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 5 cut(s) 345, 549, 669, 682, 793
PleI GAGTC 4 cut(s) 43, 151, 314, 476
PpsI GAGTC 4 cut(s) 43, 151, 314, 476
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 6, 880
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 2 cut(s) 4, 872
PteI GCGCGC 2 cut(s) 362, 364
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 4 cut(s) 212, 521, 566, 614
RsaNI GTAC 4 cut(s) 211, 520, 565, 613
SatI GCNGC 5 cut(s) 344, 548, 668, 681, 792
SchI GAGTC 4 cut(s) 43, 151, 314, 477
ScrFI CCNGG 3 cut(s) 356, 509, 711
SduI GDGCHC 2 cut(s) 124, 542
SfcI CTRYAG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 107, 921
SsiI CCGC 9 cut(s) 261, 328, 341, 352, 680, 683, 702, 736, 791
StyD4I CCNGG 3 cut(s) 354, 507, 709
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 642
TaiI ACGT 1 cut(s) 537
TasI AATT 2 cut(s) 107, 921
TatI WGTACW 1 cut(s) 210
TauI GCSGC 2 cut(s) 683, 794
TfiI GAWTC 3 cut(s) 435, 479, 590
TscAI CASTG 1 cut(s) 549
TseI GCWGC 3 cut(s) 343, 547, 667
TspDTI ATGAA 4 cut(s) 85, 167, 634, 933
TspGWI ACGGA 2 cut(s) 443, 582
TspRI CASTG 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.