AT1G22280

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004594
Physical Location & Seq
Forward (+)
7873867 .. 7876018
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22280.3

Sequence Viewer

Length: 846 bp
ATGGGAAAATTTTGTTGCTTCACTTCCGCTTCTGAGGTTGTGGGAGGACAATCATCATCACGATCAGGTAAAGGAAGAAGTGATGAAGGGATGATCAAGTATGGTTTTAGTCTAGTGAAAGGAAAAGCTAACCATCCAATGGAAGATTATCATGTTGCTAACTTTATCAACATCCAAGACCATGAATTGGGTCTTTTTGCTATTTATGATGGTCATATGGGTGATAGTGTCCCTGCTTACTTGCAGAAACGTCTCTTCTCCAATATCCTTAAGGAGGGAGAGTTTTGGGTTGATCCTCGAAGGTCTATTGCAAAAGCTTATGAGAAGACGGACCAAGCGATTCTATCGAATAGTTCTGACTTGGGTCGTGGTGGTTCTACTGCTGTGACTGCTATATTGATTAATGGGAGAAAGTTGTGGATAGCTAATGTTGGTGATTCACGAGCTGTTCTTTCTCATGGTGGCGCTATAACGCAGATGAGTACAGATCATGAGCCTCGTACTGAAAGGTCGAGTATTGAAGATAGAGGTGGATTTGTATCCAATCTACCAGGTGATGTTCCTCGGGTGAATGGTCAATTAGCTGTGTCTCGTGCTTTTGGAGATAAGGGACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGATAGCCAGACAGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGAAGAGGCAATGGAGATAGCGAGAAGAGTGAAAGATCCACAGAAAGCGGCAAAGGAATTAACAGCTGAAGCATTGAGAAGAGAGAGTAAAGACGACATATCTTGTGTCGTGGTCCGATTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

281

Amino Acids

30.72

Weight (kDa)

6.67

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 42 - 279 1.4e-54 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 187
AciI CCGC 2 cut(s) 27, 767
AclWI GGATC 2 cut(s) 287, 749
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 2 cut(s) 484, 502
AfiI CCNNNNNNNGG 3 cut(s) 139, 187, 274
AflII CTTAAG 2 cut(s) 269, 614
AgsI TTSAA 1 cut(s) 521
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 7 cut(s) 128, 317, 425, 446, 584, 653, 785
AluI AGCT 7 cut(s) 128, 317, 425, 446, 584, 653, 785
Alw26I GTCTC 2 cut(s) 257, 594
AlwI GGATC 2 cut(s) 287, 749
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 564
ApoI RAATTY 1 cut(s) 8
AseI ATTAAT 1 cut(s) 402
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 331, 832
AsuHPI GGTGA 5 cut(s) 233, 446, 566, 580, 721
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 2 cut(s) 331, 832
BauI CACGAG 2 cut(s) 441, 591
BbsI GAAGAC 1 cut(s) 332
BccI CCATC 3 cut(s) 141, 203, 689
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 257, 594
BfaI CTAG 2 cut(s) 113, 690
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 468
BfrI CTTAAG 2 cut(s) 269, 614
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 331, 832
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 2 cut(s) 331, 832
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 708
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 563
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 187, 274
Bse3DI GCAATG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 538
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 3 cut(s) 96, 133, 171
BseJI GATNNNNATC 1 cut(s) 538
BseLI CCNNNNNNNGG 3 cut(s) 139, 187, 274
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 564
BslFI GGGAC 2 cut(s) 215, 624
BslI CCNNNNNNNGG 3 cut(s) 139, 187, 274
BsmAI GTCTC 2 cut(s) 257, 594
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 215, 624
BsoBI CYCGRG 1 cut(s) 564
Bsp143I GATC 5 cut(s) 62, 93, 292, 487, 754
BspACI CCGC 2 cut(s) 27, 767
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 490
BspPI GGATC 2 cut(s) 287, 749
BspTI CTTAAG 2 cut(s) 269, 614
BsrDI GCAATG 1 cut(s) 735
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 5 cut(s) 62, 93, 292, 487, 754
BssSI CACGAG 2 cut(s) 441, 591
Bst2BI CACGAG 2 cut(s) 441, 591
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 4 cut(s) 260, 717, 739, 793
BstAFI CTTAAG 2 cut(s) 269, 614
BstDEI CTNAG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 3 cut(s) 96, 133, 171
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 5 cut(s) 65, 96, 295, 490, 757
BstMAI GTCTC 2 cut(s) 257, 594
BstMBI GATC 5 cut(s) 62, 93, 292, 487, 754
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 552
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 657
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 754
BstYI RGATCY 1 cut(s) 754
BsuI GTATCC 1 cut(s) 550
BtsCI GGATG 3 cut(s) 96, 133, 171
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 331, 832
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 2 cut(s) 483, 501
CviAII CATG 4 cut(s) 152, 182, 458, 491
CviQI GTAC 2 cut(s) 483, 501
DdeI CTNAG 1 cut(s) 33
DpnI GATC 5 cut(s) 64, 95, 294, 489, 756
DpnII GATC 5 cut(s) 62, 93, 292, 487, 754
Eam1104I CTCTTC 4 cut(s) 260, 717, 739, 793
EarI CTCTTC 4 cut(s) 260, 717, 739, 793
Eco47I GGWCC 2 cut(s) 331, 832
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 4 cut(s) 155, 185, 461, 494
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 215, 624
FatI CATG 4 cut(s) 151, 181, 457, 490
FauNDI CATATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 3 cut(s) 103, 120, 158
Fsp4HI GCNGC 1 cut(s) 768
FspBI CTAG 2 cut(s) 113, 690
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 468
HhaI GCGC 1 cut(s) 467
Hin1II CATG 4 cut(s) 155, 185, 461, 494
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 3 cut(s) 340, 437, 837
HphI GGTGA 5 cut(s) 233, 446, 566, 580, 721
Hpy188I TCNGA 5 cut(s) 34, 358, 634, 836, 842
Hpy188III TCNNGA 4 cut(s) 60, 441, 491, 703
HpyAV CCTTC 3 cut(s) 80, 294, 700
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 244, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 4 cut(s) 155, 185, 461, 494
HspAI GCGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 5 cut(s) 62, 93, 292, 487, 754
LpnPI CCDG 7 cut(s) 51, 246, 537, 564, 651, 680, 688
LweI GCATC 1 cut(s) 708
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 2 cut(s) 113, 690
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 385
MalI GATC 5 cut(s) 64, 95, 294, 489, 756
MboI GATC 5 cut(s) 62, 93, 292, 487, 754
MboII GAAGA 9 cut(s) 87, 155, 247, 337, 533, 671, 734, 756, 810
MflI RGATCY 1 cut(s) 754
MluCI AATT 4 cut(s) 8, 185, 578, 776
MnlI CCTC 8 cut(s) 28, 38, 268, 306, 507, 521, 573, 718
MseI TTAA 4 cut(s) 270, 402, 615, 779
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 785
MspCI CTTAAG 2 cut(s) 269, 614
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeI CATATG 1 cut(s) 216
NdeII GATC 5 cut(s) 62, 93, 292, 487, 754
NlaIII CATG 4 cut(s) 155, 185, 461, 494
NmuCI GTSAC 1 cut(s) 385
PagI TCATGA 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PfeI GAWTC 3 cut(s) 340, 437, 837
PflMI CCANNNNNTGG 2 cut(s) 139, 187
PkrI GCNGC 1 cut(s) 769
PshAI GACNNNNGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 2 cut(s) 331, 832
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 754
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 484, 502
RsaNI GTAC 2 cut(s) 483, 501
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 4 cut(s) 270, 402, 615, 779
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 5 cut(s) 62, 93, 292, 487, 754
Sau96I GGNCC 2 cut(s) 331, 832
ScrFI CCNGG 1 cut(s) 552
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 1 cut(s) 708
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 2 cut(s) 331, 832
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 3 cut(s) 269, 614, 625
SmoI CTYRAG 3 cut(s) 269, 614, 625
Sse9I AATT 4 cut(s) 8, 185, 578, 776
SsiI CCGC 2 cut(s) 27, 767
SspMI CTAG 2 cut(s) 113, 690
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 658
TaiI ACGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 298, 347, 512
TasI AATT 4 cut(s) 8, 185, 578, 776
TatI WGTACW 1 cut(s) 482
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 3 cut(s) 340, 437, 837
Tru1I TTAA 4 cut(s) 270, 402, 615, 779
Tru9I TTAA 4 cut(s) 270, 402, 615, 779
TseFI GTSAC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 99, 198, 735
TspGWI ACGGA 1 cut(s) 344
Van91I CCANNNNNTGG 2 cut(s) 139, 187
Vha464I CTTAAG 2 cut(s) 269, 614
VpaK11BI GGWCC 2 cut(s) 331, 832
VspI ATTAAT 1 cut(s) 402
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 8
XspI CTAG 2 cut(s) 113, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.