Rh7BG450600

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004594
Physical Location & Seq
Reverse (-)
52877576 .. 52883247
5672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG450600.1

Sequence Viewer

Length: 816 bp
ATGCAGTATGGAGGACGGTCATCGTCGAGCTCTGGTAAGGGAAAAAACAATGAGGGGTTAATTAAGTATGGTTTCAGCCTGGTAAAAGGAAAAGCTAATCATCCAATGGAGGATTATCATGTTGCTAAGTTCGTTAGGTCCCAGGGACATGAGTTAGGATTGTTTGCTATATATGATGGCCATTTGGGAGACACCGTGCCTCAATACTTACAGAAGCATTTGTTTTCAAATATTCTTAAGGAGGAAGAATTTTGGGTCGACCCTAACAGATCTATCTCAAAAGCCTATGAGAGGACAGACCAGGCAATTCTCTCGCATAGCACTGACTTGGGGCGTGGTGGGTCCACTGCTGTCACTGCAATATTGTTAAATGGTCAGCGGTTATATGTGGCCAACGTCGGAGATTCGCGGGCAGTTCTTTCAAAGGAGGGTCGGGCAGTACAGATGTCAATAGACCATGAACCCAATACTGAACGAGGCAGCATTGAAAACAAAGGCGGCTTTGTCTCAAACATGCCAGGAGATGTACCAAGAGTTAATGGGCAGCTGGCAGTTTCTCGTGCTTTTGGAGACAAAAGCCTCAAGTCGCATTTACGATCAGACCCAGACATACAGGATACTTACATAGACATGAATACAGATGTTCTAATCCTTGCCAGTGATGGCCTTTGGAAGGTCATGGGTAATCAAGAGGCAGTTGATATTGCAAGAAAAATTAAAGACCCTATGAAGGCGGCTAAGGAGTTAACAGCTGAAGCTTTGAAAAGAGATAGTAAAGATGATATATCTTGCGTTGTTGTTAGATTTAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

271

Amino Acids

29.8

Weight (kDa)

7.83

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 31 - 262 5.4e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 409
AciI CCGC 4 cut(s) 379, 409, 498, 734
AcoI YGGCCR 2 cut(s) 178, 390
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 441, 528
AfiI CCNNNNNNNGG 3 cut(s) 291, 673, 730
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 4 cut(s) 228, 423, 488, 763
AjnI CCWGG 4 cut(s) 78, 141, 300, 517
AluBI AGCT 5 cut(s) 30, 95, 547, 752, 758
AluI AGCT 5 cut(s) 30, 95, 547, 752, 758
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 3 cut(s) 183, 511, 564
AoxI GGCC 3 cut(s) 178, 390, 664
ApeKI GCWGC 2 cut(s) 480, 544
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 138, 342
AvaII GGWCC 2 cut(s) 138, 342
BalI TGGCCA 2 cut(s) 180, 392
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 492, 556
BccI CCATC 2 cut(s) 170, 656
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 4 cut(s) 80, 143, 302, 519
BciVI GTATCC 1 cut(s) 610
BcoDI GTCTC 3 cut(s) 183, 511, 564
BfrI CTTAAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 610
BglII AGATCT 1 cut(s) 269
BisI GCNGC 4 cut(s) 481, 499, 545, 735
BlsI GCNGC 4 cut(s) 482, 500, 546, 736
Bme1390I CCNGG 4 cut(s) 80, 143, 302, 519
Bme18I GGWCC 2 cut(s) 138, 342
BmgT120I GGNCC 2 cut(s) 138, 342
BmiI GGNNCC 2 cut(s) 140, 343
BmrFI CCNGG 4 cut(s) 80, 143, 302, 519
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 141, 142
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 673, 730
Bse1I ACTGG 1 cut(s) 657
BseBI CCWGG 4 cut(s) 80, 143, 302, 519
BseDI CCNNGG 2 cut(s) 141, 142
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 291, 673, 730
BseNI ACTGG 1 cut(s) 657
BseXI GCAGC 2 cut(s) 492, 556
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 3 cut(s) 180, 392, 666
BsiHKAI GWGCWC 1 cut(s) 32
BslFI GGGAC 2 cut(s) 124, 159
BslI CCNNNNNNNGG 3 cut(s) 291, 673, 730
BsmAI GTCTC 3 cut(s) 183, 511, 564
BsmFI GGGAC 2 cut(s) 124, 159
BsnI GGCC 3 cut(s) 180, 392, 666
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 269, 596
BspACI CCGC 4 cut(s) 379, 409, 498, 734
BspANI GGCC 3 cut(s) 180, 392, 666
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 140, 343
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 2 cut(s) 141, 142
BssMI GATC 2 cut(s) 269, 596
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 4 cut(s) 80, 143, 302, 519
Bst4CI ACNGT 2 cut(s) 18, 196
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 411, 549
BstDEI CTNAG 2 cut(s) 126, 738
BstENI CCTNNNNNAGG 2 cut(s) 289, 671
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 409
BstKTI GATC 2 cut(s) 272, 599
BstMAI GTCTC 3 cut(s) 183, 511, 564
BstMBI GATC 2 cut(s) 269, 596
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 4 cut(s) 80, 143, 302, 519
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 4 cut(s) 78, 141, 300, 517
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 492, 556
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 3 cut(s) 180, 392, 666
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 345, 354
BtsIMutI CAGTG 4 cut(s) 321, 345, 354, 664
Cac8I GCNNGC 2 cut(s) 411, 549
Cfr13I GGNCC 2 cut(s) 138, 342
Csp6I GTAC 2 cut(s) 440, 527
CviAII CATG 6 cut(s) 119, 149, 458, 514, 631, 679
CviQI GTAC 2 cut(s) 440, 527
DdeI CTNAG 2 cut(s) 126, 738
DpnI GATC 2 cut(s) 271, 598
DpnII GATC 2 cut(s) 269, 596
EaeI YGGCCR 2 cut(s) 178, 390
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 138, 342
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 30
EcoNI CCTNNNNNAGG 2 cut(s) 289, 671
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 78, 141, 300, 517
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 6 cut(s) 122, 152, 461, 517, 634, 682
FaqI GGGAC 2 cut(s) 124, 159
FatI CATG 6 cut(s) 118, 148, 457, 513, 630, 678
FauI CCCGC 1 cut(s) 402
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 481, 499, 545, 735
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 481, 499, 545, 735
GluI GCNGC 4 cut(s) 481, 499, 545, 735
HaeIII GGCC 3 cut(s) 180, 392, 666
Hin1II CATG 6 cut(s) 122, 152, 461, 517, 634, 682
HincII GTYRAC 2 cut(s) 259, 747
HindII GTYRAC 2 cut(s) 259, 747
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 1 cut(s) 404
HpaI GTTAAC 1 cut(s) 747
Hpy166II GTNNAC 3 cut(s) 259, 345, 747
Hpy188I TCNGA 2 cut(s) 401, 601
Hpy188III TCNNGA 1 cut(s) 689
Hpy8I GTNNAC 3 cut(s) 259, 345, 747
Hpy99I CGWCG 2 cut(s) 28, 401
HpyAV CCTTC 2 cut(s) 667, 724
HpyCH4III ACNGT 2 cut(s) 18, 196
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 4, 359, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 126, 738
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 6 cut(s) 122, 152, 461, 517, 634, 682
KspAI GTTAAC 1 cut(s) 747
Kzo9I GATC 2 cut(s) 269, 596
Lsp1109I GCAGC 2 cut(s) 492, 556
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 271, 598
MboI GATC 2 cut(s) 269, 596
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 2 cut(s) 180, 392
MluCI AATT 4 cut(s) 60, 248, 306, 714
MluNI TGGCCA 2 cut(s) 180, 392
MmeI TCCRAC 1 cut(s) 379
Mox20I TGGCCA 2 cut(s) 180, 392
MscI TGGCCA 2 cut(s) 180, 392
MseI TTAA 7 cut(s) 59, 63, 237, 368, 537, 717, 746
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 2 cut(s) 180, 392
MspA1I CMGCKG 3 cut(s) 379, 547, 752
MspCI CTTAAG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 80, 143, 302, 519
MvaI CCWGG 4 cut(s) 80, 143, 302, 519
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 2 cut(s) 269, 596
NlaIII CATG 6 cut(s) 122, 152, 461, 517, 634, 682
NlaIV GGNNCC 2 cut(s) 140, 343
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 517
PacI TTAATTAA 1 cut(s) 63
PasI CCCWGGG 1 cut(s) 142
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 4 cut(s) 482, 500, 546, 736
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 78, 141, 300, 517
PspGI CCWGG 4 cut(s) 78, 141, 300, 517
PspN4I GGNNCC 2 cut(s) 140, 343
PspPI GGNCC 2 cut(s) 138, 342
PspPPI RGGWCCY 1 cut(s) 138
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 2 cut(s) 547, 752
RsaI GTAC 2 cut(s) 441, 528
RsaNI GTAC 2 cut(s) 440, 527
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 7 cut(s) 59, 63, 237, 368, 537, 717, 746
SatI GCNGC 4 cut(s) 481, 499, 545, 735
Sau3AI GATC 2 cut(s) 269, 596
Sau96I GGNCC 2 cut(s) 138, 342
ScrFI CCNGG 4 cut(s) 80, 143, 302, 519
SduI GDGCHC 1 cut(s) 32
SetI ASST 8 cut(s) 32, 97, 140, 399, 549, 678, 754, 760
SinI GGWCC 2 cut(s) 138, 342
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 236, 581
SmoI CTYRAG 2 cut(s) 236, 581
Sse9I AATT 4 cut(s) 60, 248, 306, 714
SsiI CCGC 4 cut(s) 379, 409, 498, 734
SspI AATATT 2 cut(s) 232, 363
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 4 cut(s) 78, 141, 300, 517
TaaI ACNGT 2 cut(s) 18, 196
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 26, 258
TasI AATT 4 cut(s) 60, 248, 306, 714
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 501, 737
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 7 cut(s) 59, 63, 237, 368, 537, 717, 746
Tru9I TTAA 7 cut(s) 59, 63, 237, 368, 537, 717, 746
TscAI CASTG 4 cut(s) 328, 352, 361, 664
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 480, 544
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 474, 647, 743
TspRI CASTG 4 cut(s) 328, 352, 361, 664
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 138, 342
XagI CCTNNNNNAGG 2 cut(s) 289, 671
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.