Rorug07G0323700

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
33449173 .. 33449931
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0323700.1

Sequence Viewer

Length: 333 bp
ATGGGTCTCCTTCTTCCCCACCAAATCTCAAATGAGTCGGAGGCAGAACGACCCAAAAGCCACCCATTACTCTACTCCATCCTCCTCTTGGGTCTGGTCTACGCTCTCCTCTCTGTGGTGCTTAAACCCAATGTCTTCGTTTTCCGAGCTCAAATCAATGGCATTGGTGGAACAGAGTCAGAGTGGGGAGAATGGGGAGAGTGTGGGAGGTGTTGCAGAGGGGTTGAGAATTTGGAGCGATGGGGTGCTATTGTGAAGTGGGGTTCGGAGTTTTTAAGTTCAAATCTTCTGAGGAGTGTTCCGAAGCTTGTAAAGCAATGTTACAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

7.68

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 88, 115
AgsI TTSAA 1 cut(s) 282
AluBI AGCT 2 cut(s) 149, 307
AluI AGCT 2 cut(s) 149, 307
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 330
ApoI RAATTY 1 cut(s) 229
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 151
BccI CCATC 2 cut(s) 86, 234
BcoDI GTCTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 115
Bse3DI GCAATG 1 cut(s) 323
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 88, 115
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 3 cut(s) 74, 98, 307
BsiHKAI GWGCWC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 88, 115
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 330
CviJI RGCY 3 cut(s) 60, 149, 307
CviKI_1 RGCY 3 cut(s) 60, 149, 307
DdeI CTNAG 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 99
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 35, 176
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 6 cut(s) 40, 146, 181, 268, 291, 303
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 290
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 80, 310
MaeIII GTNAC 1 cut(s) 320
MboII GAAGA 3 cut(s) 5, 127, 278
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 229
MlyI GAGTC 2 cut(s) 44, 185
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 7 cut(s) 34, 92, 95, 119, 201, 212, 285
MseI TTAA 2 cut(s) 123, 275
MwoI GCNNNNNNNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 43, 184
PpsI GAGTC 2 cut(s) 43, 184
Psp124BI GAGCTC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 123, 275
SchI GAGTC 2 cut(s) 44, 185
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 151, 212, 309
SgeI CNNG 4 cut(s) 100, 107, 158, 320
Sse9I AATT 1 cut(s) 229
SstI GAGCTC 1 cut(s) 151
TasI AATT 1 cut(s) 229
Tru1I TTAA 2 cut(s) 123, 275
Tru9I TTAA 2 cut(s) 123, 275
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.