Rh7AG477900

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004594
Physical Location & Seq
Reverse (-)
66967617 .. 66971742
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG477900.1

Sequence Viewer

Length: 849 bp
ATGGAGAGGTTGTGCTGTTTCAGTGCTTCCAATTCTCAGTATGGAGGACGGTCATCGTCGAGCTCTGGTAAGGGAAAAAACAATGAGGGGTTAATTAAGTATGGTTTCAGCCTGGTAAAAGGAAAAGCTAATCATCCAATGGAGGATTATCATGTTGCTAAGTTCGTTAGGTCCCAGGGACATGAGTTAGGATTGTTTGCTATATATGATGGCCATTTGGGAGACACCGTGCCTCAATACTTACAGAAGCATTTGTTTCCAAATATTCTTAAGGAGGAAGAATTTTGGGTCGACCCTAACAGATCTATCTCAAAAGCCTATGAGAGGACAGACCAGGCAATTCTCTCGCATAGCACTGACTTGGGGCGTGGCGGGTCCACTGCTGTCACTGCAATATTGTTAAATGGTCAGCGGTTATATGTGGCCAACGTCGGAGATTCGCGGGCAGTTCTTTCAAAGGAGGGTCGGGCAGTACAGATGTCAATAGACCATGAACCCAATACTGAACGAGGCAGCATTGAAAACAAAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTACCTAGAGTTAATGGGCAGCTGGCAGTGTCTCGTGCTTTTGGAGACAAAAGCCTCAAGTCGCATTTACGATCAGACCCAGACATACAGGATACTTACATAGACATGAATACAGATGTTCTAATCCTTGCCAGTGATGGCCTTTGGAAGGTAATGGGTAATCAAGAGGCAGTTGATATTGCAAGAAAAATTAAAGACCCTATGAAGGCGGCTAAGGAGTTAACAGCTGAAGCTTTGAAAAGAGATAGTAAAGATGATATATCTTGCGTTGTTGTTAGGTTTAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

282

Amino Acids

31.01

Weight (kDa)

7.73

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 42 - 273 4.9e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 442
AciI CCGC 4 cut(s) 372, 412, 442, 767
AcoI YGGCCR 2 cut(s) 211, 423
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 2 cut(s) 474, 561
AfiI CCNNNNNNNGG 3 cut(s) 324, 706, 763
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 456, 521, 796
AjnI CCWGG 4 cut(s) 111, 174, 333, 550
AluBI AGCT 5 cut(s) 63, 128, 580, 785, 791
AluI AGCT 5 cut(s) 63, 128, 580, 785, 791
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 4 cut(s) 216, 544, 594, 597
AoxI GGCC 3 cut(s) 211, 423, 697
ApeKI GCWGC 2 cut(s) 513, 577
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 171, 375
AvaII GGWCC 2 cut(s) 171, 375
BalI TGGCCA 2 cut(s) 213, 425
BanII GRGCYC 1 cut(s) 65
BauI CACGAG 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 525, 589
BccI CCATC 2 cut(s) 203, 689
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 4 cut(s) 113, 176, 335, 552
BciVI GTATCC 1 cut(s) 643
BcoDI GTCTC 4 cut(s) 216, 544, 594, 597
BfaI CTAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 302
BisI GCNGC 3 cut(s) 514, 578, 768
BlsI GCNGC 3 cut(s) 515, 579, 769
Bme1390I CCNGG 4 cut(s) 113, 176, 335, 552
Bme18I GGWCC 2 cut(s) 171, 375
BmgT120I GGNCC 2 cut(s) 171, 375
BmiI GGNNCC 2 cut(s) 173, 376
BmrFI CCNGG 4 cut(s) 113, 176, 335, 552
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 174, 175
BsaXI ACNNNNNCTCC 3 cut(s) 26, 213, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 706, 763
Bse1I ACTGG 1 cut(s) 690
BseBI CCWGG 4 cut(s) 113, 176, 335, 552
BseDI CCNNGG 2 cut(s) 174, 175
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 3 cut(s) 324, 706, 763
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 690
BseXI GCAGC 2 cut(s) 525, 589
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 3 cut(s) 213, 425, 699
BsiHKAI GWGCWC 1 cut(s) 65
BslFI GGGAC 2 cut(s) 157, 192
BslI CCNNNNNNNGG 3 cut(s) 324, 706, 763
BsmAI GTCTC 4 cut(s) 216, 544, 594, 597
BsmFI GGGAC 2 cut(s) 157, 192
BsnI GGCC 3 cut(s) 213, 425, 699
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 302, 629
BspACI CCGC 4 cut(s) 372, 412, 442, 767
BspANI GGCC 3 cut(s) 213, 425, 699
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 173, 376
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 690
BssECI CCNNGG 2 cut(s) 174, 175
BssMI GATC 2 cut(s) 302, 629
BssSI CACGAG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 4 cut(s) 113, 176, 335, 552
Bst4CI ACNGT 2 cut(s) 51, 229
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 444, 582
BstDEI CTNAG 3 cut(s) 36, 159, 771
BstENI CCTNNNNNAGG 2 cut(s) 322, 704
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 2 cut(s) 305, 632
BstMAI GTCTC 4 cut(s) 216, 544, 594, 597
BstMBI GATC 2 cut(s) 302, 629
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 4 cut(s) 113, 176, 335, 552
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 111, 174, 333, 550
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 525, 589
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 3 cut(s) 213, 425, 699
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 3 cut(s) 378, 387, 591
BtsIMutI CAGTG 6 cut(s) 28, 354, 378, 387, 591, 697
Cac8I GCNNGC 2 cut(s) 444, 582
Cfr13I GGNCC 2 cut(s) 171, 375
Csp6I GTAC 2 cut(s) 473, 560
CviAII CATG 5 cut(s) 152, 182, 491, 547, 664
CviQI GTAC 2 cut(s) 473, 560
DdeI CTNAG 3 cut(s) 36, 159, 771
DpnI GATC 2 cut(s) 304, 631
DpnII GATC 2 cut(s) 302, 629
EaeI YGGCCR 2 cut(s) 211, 423
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 171, 375
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 63
EcoNI CCTNNNNNAGG 2 cut(s) 322, 704
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 4 cut(s) 111, 174, 333, 550
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 5 cut(s) 155, 185, 494, 550, 667
FaqI GGGAC 2 cut(s) 157, 192
FatI CATG 5 cut(s) 151, 181, 490, 546, 663
FauI CCCGC 2 cut(s) 365, 435
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 514, 578, 768
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 514, 578, 768
FspBI CTAG 1 cut(s) 564
GluI GCNGC 3 cut(s) 514, 578, 768
HaeIII GGCC 3 cut(s) 213, 425, 699
Hin1II CATG 5 cut(s) 155, 185, 494, 550, 667
HincII GTYRAC 2 cut(s) 292, 780
HindII GTYRAC 2 cut(s) 292, 780
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 1 cut(s) 437
HpaI GTTAAC 1 cut(s) 780
Hpy166II GTNNAC 3 cut(s) 292, 378, 780
Hpy188I TCNGA 2 cut(s) 434, 634
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 3 cut(s) 292, 378, 780
Hpy99I CGWCG 2 cut(s) 61, 434
HpyAV CCTTC 2 cut(s) 700, 757
HpyCH4III ACNGT 2 cut(s) 51, 229
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 2 cut(s) 392, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 36, 159, 771
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 5 cut(s) 155, 185, 494, 550, 667
KspAI GTTAAC 1 cut(s) 780
Kzo9I GATC 2 cut(s) 302, 629
Lsp1109I GCAGC 2 cut(s) 525, 589
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 385
MalI GATC 2 cut(s) 304, 631
MboI GATC 2 cut(s) 302, 629
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 2 cut(s) 213, 425
MluCI AATT 5 cut(s) 31, 93, 281, 339, 747
MluNI TGGCCA 2 cut(s) 213, 425
MmeI TCCRAC 1 cut(s) 412
Mox20I TGGCCA 2 cut(s) 213, 425
MscI TGGCCA 2 cut(s) 213, 425
MseI TTAA 7 cut(s) 92, 96, 270, 401, 570, 750, 779
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 2 cut(s) 213, 425
MspA1I CMGCKG 3 cut(s) 412, 580, 785
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 4 cut(s) 113, 176, 335, 552
MvaI CCWGG 4 cut(s) 113, 176, 335, 552
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 2 cut(s) 302, 629
NlaIII CATG 5 cut(s) 155, 185, 494, 550, 667
NlaIV GGNNCC 2 cut(s) 173, 376
NmuCI GTSAC 1 cut(s) 385
NspI RCATGY 1 cut(s) 550
PacI TTAATTAA 1 cut(s) 96
PasI CCCWGGG 1 cut(s) 175
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 515, 579, 769
PpuMI RGGWCCY 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 171
Psp6I CCWGG 4 cut(s) 111, 174, 333, 550
PspGI CCWGG 4 cut(s) 111, 174, 333, 550
PspN4I GGNNCC 2 cut(s) 173, 376
PspPI GGNCC 2 cut(s) 171, 375
PspPPI RGGWCCY 1 cut(s) 171
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 2 cut(s) 580, 785
RsaI GTAC 2 cut(s) 474, 561
RsaNI GTAC 2 cut(s) 473, 560
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 7 cut(s) 92, 96, 270, 401, 570, 750, 779
SatI GCNGC 3 cut(s) 514, 578, 768
Sau3AI GATC 2 cut(s) 302, 629
Sau96I GGNCC 2 cut(s) 171, 375
ScrFI CCNGG 4 cut(s) 113, 176, 335, 552
SduI GDGCHC 1 cut(s) 65
SinI GGWCC 2 cut(s) 171, 375
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 269, 614
SmoI CTYRAG 2 cut(s) 269, 614
Sse9I AATT 5 cut(s) 31, 93, 281, 339, 747
SsiI CCGC 4 cut(s) 372, 412, 442, 767
SspI AATATT 2 cut(s) 265, 396
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 111, 174, 333, 550
TaaI ACNGT 2 cut(s) 51, 229
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 59, 291
TasI AATT 5 cut(s) 31, 93, 281, 339, 747
TatI WGTACW 1 cut(s) 472
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 7 cut(s) 92, 96, 270, 401, 570, 750, 779
Tru9I TTAA 7 cut(s) 92, 96, 270, 401, 570, 750, 779
TscAI CASTG 6 cut(s) 28, 361, 385, 394, 591, 697
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 513, 577
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 507, 680, 776
TspRI CASTG 6 cut(s) 28, 361, 385, 394, 591, 697
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 171, 375
XagI CCTNNNNNAGG 2 cut(s) 322, 704
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.