Prupe.1G517700_v2.0.a1

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004594
Physical Location & Seq
Forward (+)
42553973 .. 42558579
4607 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G517700.1

Sequence Viewer

Length: 867 bp
ATGAACCACCATGTTTCTAACTGGCTGCTCTCTTGGTTTGGTGCATTAAAAATAAGTTATGGGGGACGTTCATCATCTGGCTCTGGTAAGGGAAGAAGCCACGATGGGTTAGTAAAGTATGGTTTCAGCCTGGTAAAAGGAAAAGCTAATCATCCAATGGAGGATTATCATGTTGCTAAGTTTGTTCGGAGCCAAGGACATGAGTTAGGATTGTTTGCTATATATGATGGCCATTTGGGAGACACTGTGCCTGCATATCTACAGAAGCATTTGTTTTCAAATATCCTTAAGGAGGAAGAGTTTTGGGTCGACCCTAACAGATCTATCCTAAAAGCCTATGAGCGGACGGACCAGGCAATTCTCTCTCATAGTTCTGACTTGGGGCGTGGTGGGTCCACTGCTGTAACTGCAATATTGTTAAACAGTCAGCGATTATGGGTGGCAAATGTTGGAGATTCACGGGCAGTTCTTTCAAAAGGTGGTCAGGCAGTACAGATGTCTATAGACCATGAGCCCAATACCGAACGAGGCAGCATTGAAAACAAAGGTGGCTTTGTCTCAAACATGCCAGGAGACGTTCCTCGGGTCAATGGGCAGCTGGCTGTTTCTCGTGCTTTTGGAGACAAAAGCCTCAAGTCACATTTGCGATCAGATCCCGACGTACAAGATACCTTCGTAGACAATACTACTGATGTTCTAATCCTTGCCAGTGATGGTCTTTGGAAGGTCATGGATAATCAAGAGGCAGTTGATATTGCAAGAAAGATTAAAGACCCTCTGAAGGCAGCTAAGCAACTAACAGCTGAAGCACTGAAAAGAGATAGTAAAGATGATATTTCTTGCGTTGTTGTTAGATTTAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

289

Amino Acids

31.6

Weight (kDa)

8.51

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 343
AccI GTMKAC 2 cut(s) 309, 678
AciI CCGC 1 cut(s) 343
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 800, 825
AfaI GTAC 2 cut(s) 492, 663
AfiI CCNNNNNNNGG 3 cut(s) 292, 342, 781
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 3 cut(s) 279, 474, 539
AjnI CCWGG 3 cut(s) 129, 351, 568
AluBI AGCT 4 cut(s) 146, 598, 788, 803
AluI AGCT 4 cut(s) 146, 598, 788, 803
Alw26I GTCTC 4 cut(s) 234, 562, 567, 615
AlwI GGATC 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 4 cut(s) 25, 531, 595, 785
AspS9I GGNCC 2 cut(s) 349, 393
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 2 cut(s) 349, 393
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BalI TGGCCA 1 cut(s) 231
BanII GRGCYC 1 cut(s) 516
BauI CACGAG 1 cut(s) 609
BbvI GCAGC 4 cut(s) 12, 543, 607, 797
BccI CCATC 3 cut(s) 98, 221, 707
BciT130I CCWGG 3 cut(s) 131, 353, 570
BcoDI GTCTC 4 cut(s) 234, 562, 567, 615
BfmI CTRYAG 2 cut(s) 260, 501
BfrI CTTAAG 1 cut(s) 287
BglII AGATCT 1 cut(s) 320
BisI GCNGC 4 cut(s) 26, 532, 596, 786
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 4 cut(s) 27, 533, 597, 787
Bme1390I CCNGG 3 cut(s) 131, 353, 570
Bme18I GGWCC 2 cut(s) 349, 393
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 349, 393
BmiI GGNNCC 2 cut(s) 191, 394
BmrFI CCNGG 3 cut(s) 131, 353, 570
Bpu1102I GCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 193, 581
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 342, 781
Bse1I ACTGG 2 cut(s) 26, 708
BseBI CCWGG 3 cut(s) 131, 353, 570
BseDI CCNNGG 2 cut(s) 193, 581
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 292, 342, 781
BseNI ACTGG 2 cut(s) 26, 708
BseXI GCAGC 4 cut(s) 12, 543, 607, 797
BshFI GGCC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 582
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 292, 342, 781
BsmAI GTCTC 4 cut(s) 234, 562, 567, 615
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 320, 647, 652
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 191, 394
BspPI GGATC 1 cut(s) 647
BspTI CTTAAG 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 343
BsrI ACTGG 2 cut(s) 26, 708
BssECI CCNNGG 2 cut(s) 193, 581
BssMI GATC 3 cut(s) 320, 647, 652
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 3 cut(s) 131, 353, 570
Bst4CI ACNGT 2 cut(s) 247, 425
Bst6I CTCTTC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 252, 600
BstDEI CTNAG 2 cut(s) 177, 789
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 323, 650, 655
BstMAI GTCTC 4 cut(s) 234, 562, 567, 615
BstMBI GATC 3 cut(s) 320, 647, 652
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 3 cut(s) 131, 353, 570
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 3 cut(s) 129, 351, 568
BstSFI CTRYAG 2 cut(s) 260, 501
BstV1I GCAGC 4 cut(s) 12, 543, 607, 797
BstX2I RGATCY 2 cut(s) 320, 652
BstYI RGATCY 2 cut(s) 320, 652
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 243, 396, 715, 809
Cac8I GCNNGC 2 cut(s) 252, 600
Cfr13I GGNCC 2 cut(s) 349, 393
Csp6I GTAC 2 cut(s) 491, 662
CviAII CATG 6 cut(s) 11, 170, 200, 509, 565, 730
CviQI GTAC 2 cut(s) 491, 662
DdeI CTNAG 2 cut(s) 177, 789
DpnI GATC 3 cut(s) 322, 649, 654
DpnII GATC 3 cut(s) 320, 647, 652
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 349, 393
Eco57I CTGAAG 2 cut(s) 800, 825
Eco88I CYCGRG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 129, 351, 568
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 6 cut(s) 14, 173, 203, 512, 568, 733
FaqI GGGAC 1 cut(s) 78
FatI CATG 6 cut(s) 10, 169, 199, 508, 564, 729
FblI GTMKAC 2 cut(s) 309, 678
Fnu4HI GCNGC 4 cut(s) 26, 532, 596, 786
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 4 cut(s) 26, 532, 596, 786
GluI GCNGC 4 cut(s) 26, 532, 596, 786
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 6 cut(s) 14, 173, 203, 512, 568, 733
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 455
Hpy166II GTNNAC 3 cut(s) 310, 396, 679
Hpy188I TCNGA 4 cut(s) 189, 376, 652, 780
Hpy188III TCNNGA 2 cut(s) 656, 740
Hpy8I GTNNAC 3 cut(s) 310, 396, 679
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 3 cut(s) 682, 718, 775
HpyCH4III ACNGT 2 cut(s) 247, 425
HpyCH4IV ACGT 3 cut(s) 67, 576, 660
HpyCH4V TGCA 4 cut(s) 44, 254, 410, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 177, 789
HpySE526I ACGT 3 cut(s) 67, 576, 660
Hsp92II CATG 6 cut(s) 14, 173, 203, 512, 568, 733
Kzo9I GATC 3 cut(s) 320, 647, 652
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 4 cut(s) 12, 543, 607, 797
MaeII ACGT 3 cut(s) 67, 576, 660
MaeIII GTNAC 2 cut(s) 403, 636
MalI GATC 3 cut(s) 322, 649, 654
MbiI CCGCTC 1 cut(s) 343
MboI GATC 3 cut(s) 320, 647, 652
MboII GAAGA 2 cut(s) 105, 308
MflI RGATCY 2 cut(s) 320, 652
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 7 cut(s) 154, 286, 521, 591, 641, 736, 786
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 4 cut(s) 47, 288, 419, 768
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 598, 803
MspCI CTTAAG 1 cut(s) 287
MspR9I CCNGG 3 cut(s) 131, 353, 570
MvaI CCWGG 3 cut(s) 131, 353, 570
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 3 cut(s) 320, 647, 652
NlaIII CATG 6 cut(s) 14, 173, 203, 512, 568, 733
NlaIV GGNNCC 2 cut(s) 191, 394
NmuCI GTSAC 1 cut(s) 636
NspI RCATGY 1 cut(s) 568
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 4 cut(s) 27, 533, 597, 787
Psp6I CCWGG 3 cut(s) 129, 351, 568
PspGI CCWGG 3 cut(s) 129, 351, 568
PspN4I GGNNCC 2 cut(s) 191, 394
PspPI GGNCC 2 cut(s) 349, 393
PsuI RGATCY 2 cut(s) 320, 652
PvuII CAGCTG 2 cut(s) 598, 803
RsaI GTAC 2 cut(s) 492, 663
RsaNI GTAC 2 cut(s) 491, 662
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 4 cut(s) 47, 288, 419, 768
SatI GCNGC 4 cut(s) 26, 532, 596, 786
Sau3AI GATC 3 cut(s) 320, 647, 652
Sau96I GGNCC 2 cut(s) 349, 393
ScrFI CCNGG 3 cut(s) 131, 353, 570
SduI GDGCHC 1 cut(s) 516
SfcI CTRYAG 2 cut(s) 260, 501
SinI GGWCC 2 cut(s) 349, 393
SmlI CTYRAG 2 cut(s) 287, 632
SmoI CTYRAG 2 cut(s) 287, 632
Sse9I AATT 1 cut(s) 357
SsiI CCGC 1 cut(s) 343
SspI AATATT 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 129, 351, 568
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 247, 425
TaiI ACGT 3 cut(s) 70, 579, 663
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 4 cut(s) 47, 288, 419, 768
Tru9I TTAA 4 cut(s) 47, 288, 419, 768
TscAI CASTG 4 cut(s) 250, 403, 715, 816
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 4 cut(s) 25, 531, 595, 785
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 2 cut(s) 17, 60
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 4 cut(s) 250, 403, 715, 816
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 349, 393
XagI CCTNNNNNAGG 1 cut(s) 290
XceI RCATGY 1 cut(s) 568
XmiI GTMKAC 2 cut(s) 309, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.