AT1G23050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016083
Physical Location & Seq
Forward (+)
8168443 .. 8169267
825 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23050.1

Sequence Viewer

Length: 486 bp
ATGAACACAAACGATCATGGCCTTCTCTTCTTGACCTTAATCTTCGTCTTTTCTCTTGTTTACTTCCCCTACTTAGTCATATCCGACACACCATGTCCCTACCCGTGTTATCCAACGCCGCCTATTGGTGGTGGCTCCTCCACACCTTCCATGACTCAACCACCACCATATCCTCCTCCAGGCGTTAACTACCCTACTCCAGCTGGGAATTTACCAAATTACCCTCCTCCGGTTGGGAATATACCTAACTACCCTTCTCCACCGTATGGTGGCGGAGACAGTAGTGGCAGCAGCTTCTATGGCCCTCCACCGCCGAATGCTATTTTGCCGTACTTCCCTTACTACTTTAGAAAACCTCCTCACCAAACGGATCAAACGTCCTCGTCTTCACACGTGGCGGTTCCAGGGAAATGGACGGTGAGGATCGTAGCCGTGGCAAATCTTGTGGTTGTTGGAGTTCTCGGTAACATTCTGTTTATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.22

Weight (kDa)

6.8

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 266
AciI CCGC 4 cut(s) 119, 273, 311, 398
AclWI GGATC 2 cut(s) 378, 431
AcsI RAATTY 1 cut(s) 208
AcvI CACGTG 1 cut(s) 394
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 7 cut(s) 125, 128, 179, 229, 233, 266, 269
AflIII ACRYGT 1 cut(s) 391
AjnI CCWGG 2 cut(s) 178, 403
AluBI AGCT 2 cut(s) 203, 294
AluI AGCT 2 cut(s) 203, 294
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 378, 431
AoxI GGCC 2 cut(s) 19, 301
ApeKI GCWGC 2 cut(s) 288, 291
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 353, 430
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 300, 303
BceAI ACGGC 2 cut(s) 313, 416
BciT130I CCWGG 2 cut(s) 180, 405
BcoDI GTCTC 1 cut(s) 270
BisI GCNGC 3 cut(s) 119, 289, 292
BlsI GCNGC 3 cut(s) 120, 290, 293
Bme1390I CCNGG 2 cut(s) 180, 405
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 136, 402
BmrFI CCNGG 2 cut(s) 180, 405
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 2 cut(s) 162, 183
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 404, 432
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 7 cut(s) 125, 128, 179, 229, 233, 266, 269
BseBI CCWGG 2 cut(s) 180, 405
BseDI CCNNGG 2 cut(s) 404, 432
BseLI CCNNNNNNNGG 7 cut(s) 125, 128, 179, 229, 233, 266, 269
BseRI GAGGAG 4 cut(s) 127, 165, 216, 348
BseXI GCAGC 2 cut(s) 300, 303
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 2 cut(s) 21, 303
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 7 cut(s) 125, 128, 179, 229, 233, 266, 269
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 21, 303
Bsp143I GATC 3 cut(s) 13, 370, 423
BspACI CCGC 4 cut(s) 119, 273, 311, 398
BspANI GGCC 2 cut(s) 21, 303
BspLI GGNNCC 2 cut(s) 136, 402
BspPI GGATC 2 cut(s) 378, 431
BssECI CCNNGG 2 cut(s) 404, 432
BssMI GATC 3 cut(s) 13, 370, 423
Bst2UI CCWGG 2 cut(s) 180, 405
Bst4CI ACNGT 3 cut(s) 264, 281, 418
Bst6I CTCTTC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 177
BstKTI GATC 3 cut(s) 16, 373, 426
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 3 cut(s) 13, 370, 423
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 2 cut(s) 180, 405
BstSCI CCNGG 2 cut(s) 178, 403
BstV1I GCAGC 2 cut(s) 300, 303
BstV2I GAAGAC 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 21, 303
BtgI CCRYGG 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 331
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 3 cut(s) 17, 93, 151
CviJI RGCY 6 cut(s) 21, 135, 203, 294, 303, 431
CviKI_1 RGCY 6 cut(s) 21, 135, 203, 294, 303, 431
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 15, 372, 425
DpnII GATC 3 cut(s) 13, 370, 423
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 178, 403
FaeI CATG 3 cut(s) 20, 96, 154
FaiI YATR 9 cut(s) 18, 80, 94, 152, 169, 242, 267, 300, 479
FaqI GGGAC 1 cut(s) 81
FatI CATG 3 cut(s) 16, 92, 150
Fnu4HI GCNGC 3 cut(s) 119, 289, 292
Fsp4HI GCNGC 3 cut(s) 119, 289, 292
GluI GCNGC 3 cut(s) 119, 289, 292
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 162, 183
HaeIII GGCC 2 cut(s) 21, 303
HapII CCGG 1 cut(s) 230
Hin1II CATG 3 cut(s) 20, 96, 154
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 154
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 353, 430
Hpy166II GTNNAC 2 cut(s) 61, 187
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 61, 187
HpyAV CCTTC 3 cut(s) 32, 156, 264
HpyCH4III ACNGT 3 cut(s) 264, 281, 418
HpyCH4IV ACGT 2 cut(s) 377, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 377, 393
Hsp92II CATG 3 cut(s) 20, 96, 154
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 13, 370, 423
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 7 cut(s) 165, 189, 192, 213, 243, 390, 417
Lsp1109I GCAGC 2 cut(s) 300, 303
MaeII ACGT 2 cut(s) 377, 393
MaeIII GTNAC 1 cut(s) 464
MalI GATC 3 cut(s) 15, 372, 425
MboI GATC 3 cut(s) 13, 370, 423
MboII GAAGA 3 cut(s) 19, 34, 378
MluCI AATT 2 cut(s) 208, 217
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 3 cut(s) 108, 137, 433
MseI TTAA 3 cut(s) 38, 186, 484
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 180, 405
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 180, 405
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 3 cut(s) 13, 370, 423
NlaIII CATG 3 cut(s) 20, 96, 154
NlaIV GGNNCC 2 cut(s) 136, 402
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 3 cut(s) 120, 290, 293
PleI GAGTC 1 cut(s) 148
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 394
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 178, 403
PspCI CACGTG 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 2 cut(s) 178, 403
PspN4I GGNNCC 2 cut(s) 136, 402
PspPI GGNCC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 38, 186, 484
SatI GCNGC 3 cut(s) 119, 289, 292
Sau3AI GATC 3 cut(s) 13, 370, 423
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 180, 405
SetI ASST 8 cut(s) 38, 148, 205, 247, 296, 358, 380, 396
Sse9I AATT 2 cut(s) 208, 217
SsiI CCGC 4 cut(s) 119, 273, 311, 398
StyD4I CCNGG 2 cut(s) 178, 403
TaaI ACNGT 3 cut(s) 264, 281, 418
TaiI ACGT 2 cut(s) 380, 396
TasI AATT 2 cut(s) 208, 217
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 38, 186, 484
Tru9I TTAA 3 cut(s) 38, 186, 484
TseI GCWGC 2 cut(s) 288, 291
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.