Rh4DG390600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016083
Physical Location & Seq
Forward (+)
60700923 .. 60702266
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG390600.1

Sequence Viewer

Length: 456 bp
ATGGCAACAATGTCCGACAATCCATGCGCATACCCGTGTTATCCTCCACCTACCGGTACTACTACTACTCCAACTCCGGTGACCACCACGCCTCCTCAGCCTACCACACCGACAACGTACCCGCCTCCGGCCTACCCTACGCCGACTGGATATTACCCTTACAACCCTCCGCCGAGTACATATAACGGCGGTGGCGGCTACGGCTACGGTCCCCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCTTGGAGACGCCTCATCAGCAACCTCATGCCACCTCACTAGGTCAACGCTCATGGCAATAGCCACCGCCACCAATCTTCTTGTGGCAAGAGGGCCAAGACTATTCTACTCCCTCAAACAGCACAACCATTGTCTCTGCTCAGCTGCAATTAAGCAATTTATACATGGTCTGTTACAAGGTCCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.13

Weight (kDa)

8.59

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 28
AciI CCGC 5 cut(s) 122, 170, 189, 195, 333
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 3 cut(s) 58, 119, 178
AfiI CCNNNNNNNGG 2 cut(s) 53, 127
AgeI ACCGGT 1 cut(s) 53
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 267, 404
AoxI GGCC 2 cut(s) 129, 359
ApeKI GCWGC 1 cut(s) 410
AsiGI ACCGGT 1 cut(s) 53
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 209, 359, 446
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 209, 446
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 397
BceAI ACGGC 2 cut(s) 202, 217
BcoDI GTCTC 2 cut(s) 267, 404
BfaI CTAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 196, 411
BlpI GCTNAGC 1 cut(s) 406
BlsI GCNGC 2 cut(s) 197, 412
Bme18I GGWCC 2 cut(s) 209, 446
BmgT120I GGNCC 3 cut(s) 209, 359, 446
BmiI GGNNCC 2 cut(s) 211, 448
Bpu10I CCTNAGC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 406
BsaHI GRCGYC 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 53, 76
BsaXI ACNNNNNCTCC 6 cut(s) 52, 58, 76, 82, 88, 106
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 127
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 53, 127
BseMII CTCAG 2 cut(s) 110, 420
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 84, 207
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 131, 361
BshTI ACCGGT 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 3 cut(s) 54, 77, 128
BslFI GGGAC 2 cut(s) 195, 432
BslI CCNNNNNNNGG 2 cut(s) 53, 127
BsmAI GTCTC 2 cut(s) 267, 404
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 195, 432
BsnI GGCC 2 cut(s) 131, 361
Bsp1286I GDGCHC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 406
BspACI CCGC 5 cut(s) 122, 170, 189, 195, 333
BspANI GGCC 2 cut(s) 131, 361
BspCNI CTCAG 2 cut(s) 109, 419
BspLI GGNNCC 2 cut(s) 211, 448
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 96, 406
BstEII GGTNACC 1 cut(s) 79
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 2 cut(s) 267, 404
BstMWI GCNNNNNNNGC 4 cut(s) 97, 195, 201, 284
BstPI GGTNACC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 131, 361
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 209, 359, 446
CseI GACGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 57, 118, 177
CspAI ACCGGT 1 cut(s) 53
CviAII CATG 6 cut(s) 24, 260, 294, 319, 431, 451
CviJI RGCY 7 cut(s) 100, 131, 198, 204, 329, 361, 410
CviKI_1 RGCY 7 cut(s) 100, 131, 198, 204, 329, 361, 410
CviQI GTAC 3 cut(s) 57, 118, 177
DdeI CTNAG 2 cut(s) 96, 406
EciI GGCGGA 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 209, 446
Eco91I GGTNACC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 6 cut(s) 27, 263, 297, 322, 434, 454
FaqI GGGAC 2 cut(s) 195, 432
FatI CATG 6 cut(s) 23, 259, 293, 318, 430, 450
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 196, 411
Fsp4HI GCNGC 2 cut(s) 196, 411
FspAI RTGCGCAY 1 cut(s) 28
FspBI CTAG 1 cut(s) 306
FspI TGCGCA 1 cut(s) 28
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 196, 411
HaeIII GGCC 2 cut(s) 131, 361
HapII CCGG 3 cut(s) 54, 77, 128
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 6 cut(s) 27, 263, 297, 322, 434, 454
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HpaII CCGG 3 cut(s) 54, 77, 128
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 195, 201, 284
HpyF3I CTNAG 2 cut(s) 96, 406
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 6 cut(s) 27, 263, 297, 322, 434, 454
HspAI GCGC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 67, 90, 132, 141, 234, 245
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 79, 438
MboII GAAGA 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 414, 422
MmeI TCCRAC 2 cut(s) 39, 95
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 34
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 3 cut(s) 54, 77, 128
MwoI GCNNNNNNNGC 4 cut(s) 97, 195, 201, 284
NlaIII CATG 6 cut(s) 27, 263, 297, 322, 434, 454
NlaIV GGNNCC 2 cut(s) 211, 448
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 79
NsbI TGCGCA 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 197, 412
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
PspEI GGTNACC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 211, 448
PspPI GGNCC 3 cut(s) 209, 359, 446
PspPPI RGGWCCY 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 3 cut(s) 58, 119, 178
RsaNI GTAC 3 cut(s) 57, 118, 177
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 2 cut(s) 196, 411
Sau96I GGNCC 3 cut(s) 209, 359, 446
SduI GDGCHC 1 cut(s) 268
SetI ASST 7 cut(s) 52, 119, 293, 303, 311, 412, 448
SinI GGWCC 2 cut(s) 209, 446
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 2 cut(s) 414, 422
SsiI CCGC 5 cut(s) 122, 170, 189, 195, 333
SspMI CTAG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 119
TasI AATT 2 cut(s) 414, 422
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 209, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.