Prupe.1G324600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016083
Physical Location & Seq
Forward (+)
30965898 .. 30967440
1543 bp
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UTR
Exon/CDS
Intron
Prupe.1G324600.1

Sequence Viewer

Length: 495 bp
ATGGCTGCTGCTGCTGCTGCTGATAACATAATAAACCCACTTATTCTCTCATTCTCAACCCTCTTCCTGGTCTCCATTCTTCTCAGCTTCCCGGCGACAACAACTTCGGATAATCCCTGCGCATATCCATGTTATCCTCCACCTACCGGCACCGGCAGCACTACTCCGGTGACCACCGCAACACCGCCTCCGCCGTCGACTCAAACCGGCTCATACCCTCCTCCTCCGACCGTCTACAATAACCCAACTGGATCGGGATATTCCTCTTACAACCCTCCTCCATCCACTTACAATGGTGGTGGTGGATATGGTTCTGGTGCCAATCCCCCTCCTGACCCCATCCTTCCCTATTTCCCATTCTACTTCAAAAACGGTGCTCGCGGAAACGGAGACGCTTCATCAGCAACCCCCCTCATTACAAGATCATCCACCCTCTTCAACACTATTGCCACCACCAATATTCTACTTGTATTTGTCTTCTTCTTTTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.03

Weight (kDa)

4.58

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 121
AccB1I GGYRCC 2 cut(s) 149, 317
AccI GTMKAC 2 cut(s) 197, 234
AccII CGCG 1 cut(s) 381
AciI CCGC 4 cut(s) 177, 185, 191, 381
AclWI GGATC 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 67, 146
AgsI TTSAA 2 cut(s) 367, 439
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 76, 384
AlwI GGATC 1 cut(s) 259
ApeKI GCWGC 6 cut(s) 5, 8, 11, 14, 17, 156
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AspLEI GCGC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 181
BanI GGYRCC 2 cut(s) 149, 317
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 4, 168
BccI CCATC 2 cut(s) 289, 347
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 2 cut(s) 76, 384
BfaI CTAG 1 cut(s) 493
BisI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 157
BlsI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 158
Bme1390I CCNGG 2 cut(s) 68, 92
BmiI GGNNCC 2 cut(s) 151, 319
BmrFI CCNGG 2 cut(s) 68, 92
BpiI GAAGAC 1 cut(s) 469
BpuMI CCSGG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 146
Bse118I RCCGGY 3 cut(s) 146, 152, 206
Bse1I ACTGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 281, 339, 425
BseLI CCNNNNNNNGG 2 cut(s) 67, 146
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 3 cut(s) 210, 213, 267
BseXI GCAGC 2 cut(s) 4, 168
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 231
BshNI GGYRCC 2 cut(s) 149, 317
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 5 cut(s) 92, 147, 153, 167, 207
BslI CCNNNNNNNGG 2 cut(s) 67, 146
BsmAI GTCTC 2 cut(s) 76, 384
BsmBI CGTCTC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 251, 422
BspACI CCGC 4 cut(s) 177, 185, 191, 381
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 151, 319
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 2 cut(s) 149, 317
BspTNI GGTCTC 1 cut(s) 76
BsrFI RCCGGY 3 cut(s) 146, 152, 206
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 3 cut(s) 146, 152, 206
BssMI GATC 2 cut(s) 251, 422
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 232, 374
Bst6I CTCTTC 2 cut(s) 68, 440
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 169
BstF5I GGATG 3 cut(s) 281, 339, 425
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 254, 425
BstMAI GTCTC 2 cut(s) 76, 384
BstMBI GATC 2 cut(s) 251, 422
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 5 cut(s) 11, 14, 17, 156, 401
BstNI CCWGG 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 66, 90
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 4, 168
BstV2I GAAGAC 1 cut(s) 469
BtsCI GGATG 3 cut(s) 281, 339, 425
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 3 cut(s) 146, 152, 206
CseI GACGC 1 cut(s) 401
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 129
CviJI RGCY 3 cut(s) 5, 87, 210
CviKI_1 RGCY 3 cut(s) 5, 87, 210
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 253, 424
DpnII GATC 2 cut(s) 251, 422
Eam1104I CTCTTC 2 cut(s) 68, 440
EarI CTCTTC 2 cut(s) 68, 440
EciI GGCGGA 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 29, 124, 130, 214, 309
FatI CATG 1 cut(s) 128
FblI GTMKAC 2 cut(s) 197, 234
Fnu4HI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 157
FokI GGATG 3 cut(s) 268, 326, 412
Fsp4HI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 157
FspBI CTAG 1 cut(s) 493
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 1 cut(s) 121
GluI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 157
HapII CCGG 5 cut(s) 92, 147, 153, 167, 207
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 199
HpaII CCGG 5 cut(s) 92, 147, 153, 167, 207
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 198, 235
Hpy188I TCNGA 2 cut(s) 109, 228
Hpy188III TCNNGA 2 cut(s) 255, 332
Hpy8I GTNNAC 2 cut(s) 198, 235
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 232, 374
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 14, 17, 156, 401
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 251, 422
Lsp1109I GCAGC 2 cut(s) 4, 168
MaeI CTAG 1 cut(s) 493
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 253, 424
MboI GATC 2 cut(s) 251, 422
MboII GAAGA 5 cut(s) 55, 71, 427, 469, 472
MhlI GDGCHC 1 cut(s) 379
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 5 cut(s) 92, 147, 153, 167, 207
MspR9I CCNGG 2 cut(s) 68, 92
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 11, 14, 17, 156, 401
NciI CCSGG 1 cut(s) 92
NdeII GATC 2 cut(s) 251, 422
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 2 cut(s) 151, 319
NmuCI GTSAC 1 cut(s) 169
NsbI TGCGCA 1 cut(s) 121
PkrI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 158
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 151, 319
RseI CAYNNNNRTG 1 cut(s) 127
SalI GTCGAC 1 cut(s) 196
SatI GCNGC 6 cut(s) 6, 9, 12, 15, 18, 157
Sau3AI GATC 2 cut(s) 251, 422
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 68, 92
SduI GDGCHC 1 cut(s) 379
SetI ASST 2 cut(s) 89, 145
SmiMI CAYNNNNRTG 1 cut(s) 127
SsiI CCGC 4 cut(s) 177, 185, 191, 381
SspI AATATT 1 cut(s) 460
SspMI CTAG 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 66, 90
TaaI ACNGT 2 cut(s) 232, 374
TaqI TCGA 1 cut(s) 197
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 6 cut(s) 5, 8, 11, 14, 17, 156
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 197, 234
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.