pycom13g02410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016083
Physical Location & Seq
Reverse (-)
1657246 .. 1657722
477 bp
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UTR
Exon/CDS
Intron
pycom13g02410.1

Sequence Viewer

Length: 477 bp
ATGGCTGCTGCTGCAAAGATTAACCCACTCATTCTCTCAGCTCTCTTTTTGTTCTCAATAATTCTCAGCTTTCCTGCAACAACAATATCAGACAATCCCTGCGCGTATCCATGTTATCCTCCACCTACAGGCACCGGAGGCACTTTTACTCCAACAACTCCGACCACCACAACGCCATCTCCTCCGTCGTCTCAAACCGCGTCATACCCGCCTCCAGCCGTCGTCAACAACCCAACTGGAAATTACCCGTACAACCGTCCTCCGTCTACTTATAACGGTGGCTATGGTTATGGTGCTAATCCTCCTCCGGACCCCATCTTACCTTATTTTCCGTTCTACTACAAAAACGGTGCTCGCGGAAACCAAGACGCTTCGTCGGCAACCTCTGTAAGCAGAAGATCGTCAACGCTCTTCAACACTATTGCCACCACGAATCTTTACGTTGTATTTGTCTACTTCTTTTTTAACTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.94

Weight (kDa)

8.91

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 2 cut(s) 266, 453
AccII CGCG 3 cut(s) 104, 200, 357
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 3 cut(s) 198, 209, 357
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 415
AhdI GACNNNNNGTC 1 cut(s) 373
AluBI AGCT 2 cut(s) 41, 69
AluI AGCT 2 cut(s) 41, 69
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 195
Aor13HI TCCGGA 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 310
AvaII GGWCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 2 cut(s) 184, 323
BceAI ACGGC 1 cut(s) 203
BciVI GTATCC 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
Bme18I GGWCC 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 133, 312
BpmI CTGGAG 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 134, 307
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 241
BseAI TCCGGA 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 51, 79
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 171, 294
Bsh1236I CGCG 3 cut(s) 104, 200, 357
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 2 cut(s) 135, 308
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 1 cut(s) 398
BspACI CCGC 3 cut(s) 198, 209, 357
BspCNI CTCAG 2 cut(s) 50, 78
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 3 cut(s) 104, 200, 357
BspLI GGNNCC 2 cut(s) 133, 312
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 241
BssMI GATC 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 257, 278, 350
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 37, 65
BstFNI CGCG 3 cut(s) 104, 200, 357
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 398
BstMWI GCNNNNNNNGC 3 cut(s) 11, 138, 377
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 3 cut(s) 104, 200, 357
BsuI GTATCC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 2 cut(s) 189, 377
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 111
CviJI RGCY 5 cut(s) 5, 41, 69, 218, 282
CviKI_1 RGCY 5 cut(s) 5, 41, 69, 218, 282
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 37, 65
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 416
Eam1105I GACNNNNNGTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 1 cut(s) 114
FaiI YATR 5 cut(s) 112, 205, 273, 285, 291
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 2 cut(s) 266, 453
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 6, 9, 12
GsuI CTGGAG 1 cut(s) 198
HapII CCGG 2 cut(s) 135, 308
HgaI GACGC 2 cut(s) 189, 377
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 2 cut(s) 226, 405
HindII GTYRAC 2 cut(s) 226, 405
HinfI GANTC 1 cut(s) 433
HpaII CCGG 2 cut(s) 135, 308
Hpy166II GTNNAC 4 cut(s) 226, 267, 405, 454
Hpy188I TCNGA 2 cut(s) 91, 162
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 4 cut(s) 226, 267, 405, 454
Hpy99I CGWCG 3 cut(s) 190, 224, 379
HpyCH4III ACNGT 3 cut(s) 257, 278, 350
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 14, 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 138, 377
HpyF3I CTNAG 2 cut(s) 37, 65
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 398
LguI GCTCTTC 1 cut(s) 416
LpnPI CCDG 7 cut(s) 87, 112, 114, 148, 222, 228, 321
MaeII ACGT 1 cut(s) 441
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 2 cut(s) 403, 408
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 2 cut(s) 60, 241
MmeI TCCRAC 2 cut(s) 176, 185
MnlI CCTC 8 cut(s) 129, 131, 192, 222, 270, 312, 315, 394
MroI TCCGGA 1 cut(s) 307
MseI TTAA 2 cut(s) 21, 465
MspI CCGG 2 cut(s) 135, 308
MvnI CGCG 3 cut(s) 104, 200, 357
MwoI GCNNNNNNNGC 3 cut(s) 11, 138, 377
NdeII GATC 1 cut(s) 398
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 133, 312
PciSI GCTCTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 433
PkrI GCNGC 3 cut(s) 7, 10, 13
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 133, 312
PspPI GGNCC 1 cut(s) 310
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 21, 465
SatI GCNGC 3 cut(s) 6, 9, 12
Sau3AI GATC 1 cut(s) 398
Sau96I GGNCC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 355
SetI ASST 6 cut(s) 43, 71, 127, 325, 386, 444
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 310
Sse9I AATT 2 cut(s) 60, 241
SsiI CCGC 3 cut(s) 198, 209, 357
TaaI ACNGT 3 cut(s) 257, 278, 350
TaiI ACGT 1 cut(s) 444
TasI AATT 2 cut(s) 60, 241
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 21, 465
Tru9I TTAA 2 cut(s) 21, 465
TseI GCWGC 3 cut(s) 5, 8, 11
TspGWI ACGGA 3 cut(s) 174, 252, 321
VpaK11BI GGWCC 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 266, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.