Rroxscaffold_5G00382160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016083
Physical Location & Seq
Forward (+)
62010355 .. 62012122
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382160.1

Sequence Viewer

Length: 543 bp
ATGACCATGTCTCCAAAGACAAAACCTTTTGTCCCAACCCTCCTCTTGGTGATGATCTCTATCATTCTGATCAACTTTCCCATGGCAACAATGTCCGACAATCCATGCGCATACCCGTGTTATCCTCCACCTACCGGTACTACTACTACTCCAACTCCGGTGACCACCACACCGCCACAGCCTACCACATCGACAACGTACCCGCCTCCGGCCTACCCTACGCCGACTGGATATTACCCTTACAACCCTCCGCCGAGTACATATAACGGTGGTGGCGGCTACGGCTACGGTCCCCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCATGGAGACGCCTCATCAGCAACCTCGTCCCACCTCACTAGGTCAACGCTCATGGCAATCGCCACCGCCACCAATCTTCTAGTTCCATATATAAGGTGGCAAGAGGGCCAAGACTATTCTACTCCCTCAAACTGCACAACCATTGTCTCTGTTCAGCTACAATTTATACATGGTCTGTTACAAGGTCCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.41

Weight (kDa)

6.87

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 109
AciI CCGC 5 cut(s) 173, 203, 251, 276, 414
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 3 cut(s) 139, 200, 259
AfiI CCNNNNNNNGG 3 cut(s) 46, 134, 208
AgeI ACCGGT 1 cut(s) 134
AluBI AGCT 1 cut(s) 505
AluI AGCT 1 cut(s) 505
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 3 cut(s) 15, 348, 499
AoxI GGCC 2 cut(s) 210, 454
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 290, 454, 533
AsuHPI GGTGA 2 cut(s) 61, 172
AvaII GGWCC 2 cut(s) 290, 533
Bbv12I GWGCWC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 15, 348, 499
BfaI CTAG 2 cut(s) 387, 428
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 290, 533
BmgT120I GGNCC 3 cut(s) 290, 454, 533
BmiI GGNNCC 2 cut(s) 292, 535
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 2 cut(s) 134, 157
BsaXI ACNNNNNCTCC 5 cut(s) 25, 133, 139, 163, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 134, 208
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 46, 134, 208
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 32, 288
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 2 cut(s) 212, 456
BshTI ACCGGT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 135, 158, 209
BslFI GGGAC 4 cut(s) 17, 276, 361, 519
BslI CCNNNNNNNGG 3 cut(s) 46, 134, 208
BsmAI GTCTC 3 cut(s) 15, 348, 499
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 4 cut(s) 17, 276, 361, 519
BsnI GGCC 2 cut(s) 212, 456
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 54, 69
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 5 cut(s) 173, 203, 251, 276, 414
BspANI GGCC 2 cut(s) 212, 456
BspLI GGNNCC 2 cut(s) 292, 535
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 54, 69
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 269, 290
BstACI GRCGYC 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 160
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 57, 72
BstMAI GTCTC 3 cut(s) 15, 348, 499
BstMBI GATC 2 cut(s) 54, 69
BstMWI GCNNNNNNNGC 2 cut(s) 282, 365
BstPI GGTNACC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 212, 456
BtgI CCRYGG 1 cut(s) 81
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 290, 454, 533
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 138, 199, 258
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 7 cut(s) 7, 82, 105, 341, 350, 400, 518
CviJI RGCY 6 cut(s) 181, 212, 279, 285, 456, 505
CviKI_1 RGCY 6 cut(s) 181, 212, 279, 285, 456, 505
CviQI GTAC 3 cut(s) 138, 199, 258
DpnI GATC 2 cut(s) 56, 71
DpnII GATC 2 cut(s) 54, 69
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 290, 533
Eco91I GGTNACC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 7 cut(s) 10, 85, 108, 344, 353, 403, 521
FaqI GGGAC 4 cut(s) 17, 276, 361, 519
FatI CATG 7 cut(s) 6, 81, 104, 340, 349, 399, 517
FauI CCCGC 1 cut(s) 210
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 277
FspAI RTGCGCAY 1 cut(s) 109
FspBI CTAG 2 cut(s) 387, 428
FspI TGCGCA 1 cut(s) 109
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 277
HaeIII GGCC 2 cut(s) 212, 456
HapII CCGG 3 cut(s) 135, 158, 209
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 7 cut(s) 10, 85, 108, 344, 353, 403, 521
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HpaII CCGG 3 cut(s) 135, 158, 209
HphI GGTGA 2 cut(s) 61, 172
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 2 cut(s) 69, 97
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 393
HpyCH4III ACNGT 2 cut(s) 269, 290
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 365
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 7 cut(s) 10, 85, 108, 344, 353, 403, 521
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 54, 69
LpnPI CCDG 6 cut(s) 148, 171, 213, 222, 315, 326
MaeI CTAG 2 cut(s) 387, 428
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 160, 525
MalI GATC 2 cut(s) 56, 71
MboI GATC 2 cut(s) 54, 69
MboII GAAGA 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 120, 176
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 3 cut(s) 135, 158, 209
MwoI GCNNNNNNNGC 2 cut(s) 282, 365
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 54, 69
NlaIII CATG 7 cut(s) 10, 85, 108, 344, 353, 403, 521
NlaIV GGNNCC 2 cut(s) 292, 535
NmeAIII GCCGAG 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 533
PspEI GGTNACC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 292, 535
PspPI GGNCC 3 cut(s) 290, 454, 533
PspPPI RGGWCCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 3 cut(s) 139, 200, 259
RsaNI GTAC 3 cut(s) 138, 199, 258
RseI CAYNNNNRTG 1 cut(s) 115
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 2 cut(s) 54, 69
Sau96I GGNCC 3 cut(s) 290, 454, 533
SduI GDGCHC 1 cut(s) 349
SetI ASST 9 cut(s) 28, 133, 200, 374, 384, 392, 446, 507, 535
SinI GGWCC 2 cut(s) 290, 533
SmiMI CAYNNNNRTG 1 cut(s) 115
Sse9I AATT 1 cut(s) 509
SsiI CCGC 5 cut(s) 173, 203, 251, 276, 414
SspMI CTAG 2 cut(s) 387, 428
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 269, 290
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 509
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 279
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 290, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XspI CTAG 2 cut(s) 387, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.