Rorug04G0331900

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
50606330 .. 50607927
1598 bp
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UTR
Exon/CDS
Intron
Rorug04G0331900.1

Sequence Viewer

Length: 180 bp
ATGGAGATTAAATGGATTTGTCCAACCGCTCCTATTGAACCAATTTCAGGTTTTGGTGGTTTTCCTTCCATTGCTTGTGATGCTGTGGTTCCTTATAAGTTTGGTGAGAAATCTTCACGAGCTGTGACTGCAACTGGCTTTCAGGACGTGACCTTCAAATCCTATAATGGTGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.33

Weight (kDa)

4.99

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 38, 157
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 116
BauI CACGAG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 47
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 139
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 80, 128
BtrI CACGTC 1 cut(s) 148
CviAII CATG 1 cut(s) 177
CviJI RGCY 2 cut(s) 122, 138
CviKI_1 RGCY 2 cut(s) 122, 138
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
FaeI CATG 1 cut(s) 180
FaiI YATR 3 cut(s) 96, 165, 178
FatI CATG 1 cut(s) 176
Hin1II CATG 1 cut(s) 180
HphI GGTGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 117, 143
HpyAV CCTTC 2 cut(s) 75, 163
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 128
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 33, 120, 128
LweI GCATC 1 cut(s) 70
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 124, 148
MalI GATC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 29
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 105
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 47
MseI TTAA 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 80, 128
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 124, 148
PsiI TTATAA 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 1 cut(s) 172
SetI ASST 4 cut(s) 52, 124, 150, 155
SfaNI GCATC 1 cut(s) 70
SgeI CNNG 7 cut(s) 60, 87, 129, 131, 147, 155, 160
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 27
TaiI ACGT 1 cut(s) 150
TasI AATT 1 cut(s) 42
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 2 cut(s) 124, 148
Tsp45I GTSAC 2 cut(s) 124, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.