RLG00000006105

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005491
Physical Location & Seq
Forward (+)
4400048 .. 4403225
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006105

Sequence Viewer

Length: 1620 bp
ATGGCTGGGGAAATAGAAGAACCCTTTTGTTTTAGCTTTCAGCCAAAGTCTATACATTCTGGCTCCATATCATTTGGGAGGTTCGAAAACGAAGGCTTATCTTGGGAACGGAGGTCTGCTTTCTCACATAACAGATATGTTGAAGAGGTTGAGAAATGCATGAAACCAGGCTCAGTTATTGAGAGGAAAGCTTATTTTGAAGCTCATTTTAAGAAGAAGGGTCTTCCCAGACCAAATTTAGCCGAGTGTTATAGTGGAACATGCTACCAAGTCGGCGAGAATGATGTATCAGAGAGTGATGACGCTTACAGAGAAGAATGTGAACTTGAAAATGAAGGGAGCAGTTATGCTGAATCAGATGACCAAAGGTCGGAGGGTTCTGTGTATCTTGGAGATTTTGAAGTCACAGAATGTGAAAAAGAAGAAGATACTGAACTTCCGTCCTCTGACCCTCAGAGGGCACCTGCATTGAATCATATCGCTATTTTGGTGGATGGTGCTGTTGAAGATGTTAATTTTGAGGAAGCGCATCAACCCGAGACAGGTTGTGCAAAATCTACTTTGATTGTTGAGGAACTGGAGAGAGATGCAAATGAGAATCATAATGGTGATGCAGTGAATGCTGAGGAGCCGCCTAAGAGTGTTGATATATGTTCAAATGCTGAACCAGCTGAGTGTGTTGCTAAAACCATTGTGGAAAGTGGCAAAAGTACTTCTTCAAAGGTCCAAAGAAACATTTCTGCTAAGGGATCTGGCAAATATCCTATAGAGAATTCCAATACTGGACAAAGAGAGCGTACACGAAGAACGGATAAAGAAAAGCTCCCATTAAAGACTGCAATGCCAACTAATAAGCATTCTGTACGCAGAACTCCGAAGTTAGAGGACTCCATGAAGGGAAAATCTTTAAATGAGAGTAAAAGTGTTAAAGAGTCATCGCGTAAGAAGCTTGGTGAACTTCAACCTTCTGCATTCAAGCCTGAATCCAGAGGACGCCAAATGACAAACAGGAACAGGGTTAGTGACGGAGCCAATTTGACTAAGTCTGATACAAGATCAAGTGTTACAACTTTCAAATTCAAAAGTTCTGAGCGAGCAGAAAAGAGGAAAGAGTTGGAAGAAAAAATGCACGCTAAGGAAGATGAAATGAACAAGGTCCAAGCAAGAAAACAGGAAAGGATAGAAGCTGAGATGAAGCAATCCCGGAAAGCCCTCAACTTCAAAGCAGCACCAATGCCTTCTTTCTACAATGTAGCTAGCGCTTCGAGGCCTGATGGGAGCATGACTGTCTCAACCAAATCCTCTAAAGTAGAAAAAAGCCGAGACAGTGCTGCTGTAAGATCGACATCAGCTTCAGAGTCAGGAAAGAGTGAAGCTGCCACAGGAGAAACTAAATGCAAGATGGCTGAGGCCTTTGTAACAAAAAGTGAAGTCACTACTGTGCAGAGGAGTCGAGCATTCGAGAGCAGGAAGGTGGCGAAAAATGAGAAAAACGTGGGGAAGCAGAAAGTTGGGGCCCAAAGAAATAGCAGAGAGATGGTGAGGAAGGGTACTACGAAAGGCGTGGGCTTTGGAAGCAGTTCCAGAATGAGTCATCTAGCAGTTGGTGTTGCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

540

Amino Acids

59.7

Weight (kDa)

8.33

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 358 - 419 2.9e-16 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 1 cut(s) 940
AciI CCGC 1 cut(s) 632
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 3 cut(s) 235, 772, 1076
AcuI CTGAAG 1 cut(s) 1338
AcyI GRCGYC 1 cut(s) 994
AfaI GTAC 4 cut(s) 712, 799, 864, 1552
AfeI AGCGCT 1 cut(s) 1261
AfiI CCNNNNNNNGG 3 cut(s) 370, 457, 542
AhdI GACNNNNNGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 166
AleI CACNNNNGTG 1 cut(s) 1439
Alw26I GTCTC 3 cut(s) 533, 1294, 1317
AlwI GGATC 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 536
Aor51HI AGCGCT 1 cut(s) 1261
AoxI GGCC 3 cut(s) 1268, 1410, 1515
ApaI GGGCCC 1 cut(s) 1519
ApeKI GCWGC 3 cut(s) 1226, 1331, 1376
ApoI RAATTY 3 cut(s) 235, 772, 1076
Asp700I GAANNNNTTC 2 cut(s) 736, 1579
AspLEI GCGC 2 cut(s) 529, 1262
AspS9I GGNCC 4 cut(s) 724, 1156, 1515, 1516
AsuC2I CCSGG 1 cut(s) 1204
AsuHPI GGTGA 3 cut(s) 620, 965, 1552
AsuII TTCGAA 1 cut(s) 84
AsuNHI GCTAGC 1 cut(s) 1256
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 2 cut(s) 724, 1156
BaeGI GKGCMC 2 cut(s) 463, 1519
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 1519
BbsI GAAGAC 1 cut(s) 215
BbvCI CCTCAGC 2 cut(s) 624, 1407
BbvI GCAGC 3 cut(s) 1238, 1318, 1363
BccI CCATC 4 cut(s) 488, 1268, 1396, 1531
BcgI CGANNNNNNTGC 2 cut(s) 1433, 1467
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 1204
BcoDI GTCTC 3 cut(s) 533, 1294, 1317
BfaI CTAG 2 cut(s) 1257, 1598
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 1263
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 4 cut(s) 632, 1227, 1332, 1377
BlsI GCNGC 4 cut(s) 633, 1228, 1333, 1378
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 2 cut(s) 168, 1204
Bme18I GGWCC 2 cut(s) 724, 1156
BmeRI GACNNNNNGTC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 4 cut(s) 724, 1156, 1515, 1516
BmiI GGNNCC 6 cut(s) 64, 462, 630, 1030, 1516, 1517
BmrFI CCNGG 2 cut(s) 168, 1204
BmsI GCATC 3 cut(s) 538, 577, 601
BmtI GCTAGC 1 cut(s) 1260
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 4 cut(s) 624, 744, 1134, 1407
Bpu14I TTCGAA 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 1204
BsaBI GATNNNNATC 1 cut(s) 1345
BsaHI GRCGYC 1 cut(s) 994
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 457, 542
Bse1I ACTGG 2 cut(s) 582, 787
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 1345
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 1345
BseLI CCNNNNNNNGG 3 cut(s) 370, 457, 542
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 7 cut(s) 186, 467, 615, 663, 1080, 1179, 1398
BseNI ACTGG 2 cut(s) 582, 787
BseRI GAGGAG 2 cut(s) 641, 1462
BseSI GKGCMC 2 cut(s) 463, 1519
BseXI GCAGC 3 cut(s) 1238, 1318, 1363
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 1463
Bsh1236I CGCG 1 cut(s) 940
BshFI GGCC 3 cut(s) 1270, 1412, 1517
BshNI GGYRCC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 1 cut(s) 1204
BslI CCNNNNNNNGG 3 cut(s) 370, 457, 542
BsmAI GTCTC 3 cut(s) 533, 1294, 1317
BsmI GAATGC 4 cut(s) 625, 856, 971, 1457
BsnI GGCC 3 cut(s) 1270, 1412, 1517
BsoBI CYCGRG 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 84
Bsp120I GGGCCC 1 cut(s) 1515
Bsp1286I GDGCHC 2 cut(s) 463, 1519
Bsp143I GATC 3 cut(s) 749, 1055, 1340
BspACI CCGC 1 cut(s) 632
BspANI GGCC 3 cut(s) 1270, 1412, 1517
BspCNI CTCAG 7 cut(s) 185, 466, 616, 664, 1081, 1180, 1399
BspFNI CGCG 1 cut(s) 940
BspHI TCATGA 1 cut(s) 1616
BspLI GGNNCC 6 cut(s) 64, 462, 630, 1030, 1516, 1517
BspMI ACCTGC 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 1260
BspPI GGATC 1 cut(s) 757
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 2 cut(s) 582, 787
BssMI GATC 3 cut(s) 749, 1055, 1340
BssNI GRCGYC 1 cut(s) 994
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 1288, 1328, 1441
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 994
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 1095, 1131, 1258
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 1 cut(s) 940
BstH2I RGCGCY 1 cut(s) 1263
BstHHI GCGC 2 cut(s) 529, 1262
BstKTI GATC 3 cut(s) 752, 1058, 1343
BstMAI GTCTC 3 cut(s) 533, 1294, 1317
BstMBI GATC 3 cut(s) 749, 1055, 1340
BstMWI GCNNNNNNNGC 4 cut(s) 620, 668, 946, 1575
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 166, 1202
BstSFI CTRYAG 1 cut(s) 765
BstSLI GKGCMC 2 cut(s) 463, 1519
BstUI CGCG 1 cut(s) 940
BstV1I GCAGC 3 cut(s) 1238, 1318, 1363
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 3 cut(s) 1270, 1412, 1517
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 621, 1333
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 1095, 1131, 1258
CciI TCATGA 1 cut(s) 1616
CfoI GCGC 2 cut(s) 529, 1262
Cfr13I GGNCC 4 cut(s) 724, 1156, 1515, 1516
CseI GACGC 2 cut(s) 311, 1002
Csp6I GTAC 4 cut(s) 711, 798, 863, 1551
CviAII CATG 5 cut(s) 160, 261, 892, 1282, 1617
CviQI GTAC 4 cut(s) 711, 798, 863, 1551
DpnI GATC 3 cut(s) 751, 1057, 1342
DpnII GATC 3 cut(s) 749, 1055, 1340
DraI TTTAAA 1 cut(s) 909
DriI GACNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 138
Eco147I AGGCCT 2 cut(s) 1270, 1412
Eco24I GRGCYC 1 cut(s) 1519
Eco47I GGWCC 2 cut(s) 724, 1156
Eco47III AGCGCT 1 cut(s) 1261
Eco57I CTGAAG 1 cut(s) 1338
Eco88I CYCGRG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 1515
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 1519
FaeI CATG 5 cut(s) 163, 264, 895, 1285, 1620
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FatI CATG 5 cut(s) 159, 260, 891, 1281, 1616
Fnu4HI GCNGC 4 cut(s) 632, 1227, 1332, 1377
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 1519
Fsp4HI GCNGC 4 cut(s) 632, 1227, 1332, 1377
FspBI CTAG 2 cut(s) 1257, 1598
GlaI GCGC 2 cut(s) 528, 1261
GluI GCNGC 4 cut(s) 632, 1227, 1332, 1377
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 1 cut(s) 1263
HaeIII GGCC 3 cut(s) 1270, 1412, 1517
HapII CCGG 1 cut(s) 1204
HgaI GACGC 2 cut(s) 311, 1002
HhaI GCGC 2 cut(s) 529, 1262
Hin1I GRCGYC 1 cut(s) 994
Hin1II CATG 5 cut(s) 163, 264, 895, 1285, 1620
Hin6I GCGC 2 cut(s) 527, 1260
HinP1I GCGC 2 cut(s) 527, 1260
HindIII AAGCTT 2 cut(s) 189, 947
HinfI GANTC 9 cut(s) 353, 472, 598, 887, 932, 983, 1358, 1450, 1591
HpaII CCGG 1 cut(s) 1204
HphI GGTGA 3 cut(s) 620, 965, 1552
Hpy166II GTNNAC 3 cut(s) 323, 800, 956
Hpy188I TCNGA 9 cut(s) 292, 358, 373, 448, 456, 876, 1048, 1090, 1357
Hpy188III TCNNGA 5 cut(s) 987, 1362, 1462, 1584, 1617
Hpy8I GTNNAC 3 cut(s) 323, 800, 956
HpyAV CCTTC 8 cut(s) 86, 211, 329, 889, 975, 1248, 1465, 1540
HpyCH4III ACNGT 3 cut(s) 1288, 1328, 1441
HpyCH4IV ACGT 1 cut(s) 1494
HpyF10VI GCNNNNNNNGC 4 cut(s) 620, 668, 946, 1575
HpySE526I ACGT 1 cut(s) 1494
Hsp92I GRCGYC 1 cut(s) 994
Hsp92II CATG 5 cut(s) 163, 264, 895, 1285, 1620
HspAI GCGC 2 cut(s) 527, 1260
Kzo9I GATC 3 cut(s) 749, 1055, 1340
LmnI GCTCC 6 cut(s) 68, 339, 628, 828, 1028, 1278
Lsp1109I GCAGC 3 cut(s) 1238, 1318, 1363
LweI GCATC 3 cut(s) 538, 577, 601
MaeI CTAG 2 cut(s) 1257, 1598
MaeII ACGT 1 cut(s) 1494
MaeIII GTNAC 5 cut(s) 403, 1022, 1063, 1417, 1432
MalI GATC 3 cut(s) 751, 1057, 1342
MboI GATC 3 cut(s) 749, 1055, 1340
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 2 cut(s) 463, 1519
MluCI AATT 5 cut(s) 235, 514, 772, 1033, 1076
MlyI GAGTC 5 cut(s) 881, 941, 1367, 1459, 1600
MmeI TCCRAC 2 cut(s) 351, 1095
Mph1103I ATGCAT 1 cut(s) 161
MroXI GAANNNNTTC 2 cut(s) 736, 1579
MseI TTAA 5 cut(s) 210, 513, 830, 908, 927
MslI CAYNNNNRTG 2 cut(s) 606, 1439
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 1204
MspR9I CCNGG 2 cut(s) 168, 1204
Mva1269I GAATGC 4 cut(s) 625, 856, 971, 1457
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 940
MwoI GCNNNNNNNGC 4 cut(s) 620, 668, 946, 1575
NciI CCSGG 1 cut(s) 1204
NdeII GATC 3 cut(s) 749, 1055, 1340
NheI GCTAGC 1 cut(s) 1256
NlaIII CATG 5 cut(s) 163, 264, 895, 1285, 1620
NlaIV GGNNCC 6 cut(s) 64, 462, 630, 1030, 1516, 1517
NmeAIII GCCGAG 2 cut(s) 268, 1346
NmuCI GTSAC 3 cut(s) 403, 1022, 1432
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 1439
PagI TCATGA 1 cut(s) 1616
PaqCI CACCTGC 1 cut(s) 472
PceI AGGCCT 2 cut(s) 1270, 1412
PctI GAATGC 4 cut(s) 625, 856, 971, 1457
PdmI GAANNNNTTC 2 cut(s) 736, 1579
PfeI GAWTC 4 cut(s) 353, 472, 598, 983
PflFI GACNNNGTC 1 cut(s) 1042
PfoI TCCNGGA 1 cut(s) 1202
PkrI GCNGC 4 cut(s) 633, 1228, 1333, 1378
PleI GAGTC 5 cut(s) 881, 940, 1366, 1458, 1599
PpsI GAGTC 5 cut(s) 881, 940, 1366, 1458, 1599
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 6 cut(s) 64, 462, 630, 1030, 1516, 1517
PspOMI GGGCCC 1 cut(s) 1515
PspPI GGNCC 4 cut(s) 724, 1156, 1515, 1516
PsuI RGATCY 1 cut(s) 749
PsyI GACNNNGTC 1 cut(s) 1042
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 712, 799, 864, 1552
RsaNI GTAC 4 cut(s) 711, 798, 863, 1551
RseI CAYNNNNRTG 2 cut(s) 606, 1439
SaqAI TTAA 5 cut(s) 210, 513, 830, 908, 927
SatI GCNGC 4 cut(s) 632, 1227, 1332, 1377
Sau3AI GATC 3 cut(s) 749, 1055, 1340
Sau96I GGNCC 4 cut(s) 724, 1156, 1515, 1516
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 5 cut(s) 881, 941, 1367, 1459, 1600
ScrFI CCNGG 2 cut(s) 168, 1204
SduI GDGCHC 2 cut(s) 463, 1519
SfaNI GCATC 3 cut(s) 538, 577, 601
SfcI CTRYAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 2 cut(s) 724, 1156
SmiMI CAYNNNNRTG 2 cut(s) 606, 1439
Sse9I AATT 5 cut(s) 235, 514, 772, 1033, 1076
SseBI AGGCCT 2 cut(s) 1270, 1412
SsiI CCGC 1 cut(s) 632
SspMI CTAG 2 cut(s) 1257, 1598
StuI AGGCCT 2 cut(s) 1270, 1412
StyD4I CCNGG 2 cut(s) 166, 1202
TaaI ACNGT 3 cut(s) 1288, 1328, 1441
TaiI ACGT 1 cut(s) 1497
TaqI TCGA 5 cut(s) 84, 1265, 1343, 1453, 1461
TasI AATT 5 cut(s) 235, 514, 772, 1033, 1076
TatI WGTACW 1 cut(s) 710
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 4 cut(s) 353, 472, 598, 983
Tru1I TTAA 5 cut(s) 210, 513, 830, 908, 927
Tru9I TTAA 5 cut(s) 210, 513, 830, 908, 927
TscAI CASTG 2 cut(s) 621, 1333
TseFI GTSAC 3 cut(s) 403, 1022, 1432
TseI GCWGC 3 cut(s) 1226, 1331, 1376
Tsp45I GTSAC 3 cut(s) 403, 1022, 1432
TspDTI ATGAA 6 cut(s) 176, 348, 908, 1158, 1163, 1208
TspGWI ACGGA 4 cut(s) 124, 429, 824, 1041
TspRI CASTG 2 cut(s) 621, 1333
Tth111I GACNNNGTC 1 cut(s) 1042
VpaK11BI GGWCC 2 cut(s) 724, 1156
XapI RAATTY 3 cut(s) 235, 772, 1076
XceI RCATGY 1 cut(s) 264
XmnI GAANNNNTTC 2 cut(s) 736, 1579
XspI CTAG 2 cut(s) 1257, 1598
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.