Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005491

Physical Location & Seq

Genomic Coordinates Forward (+)

1996656 .. 1999254

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1028200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTGGGGAGATAGAAGAGCCCTTTAGTTTTAGCTTTCAGGCAGACTCTTTACACTCTGGTTCCATATCATTCGGGAGGTTTGAAAACGAAGTTTTATCTTGGGAAAAGAGGTCGTCTTTCTCGCATAACAGATATGTTGAAGAGGTTGAAAAATGCTTGAAACCGGGTTCAGTTATTGAGCGGAAAGCTTACTTCGAAGCTCATTTCAAGAAGAAAGGTTTTCCCAAACCAAATTTAGTTGAGTGCTATAGCGGTACAAGTTATCAAGTCTGTGAAAATGGTGTCTTGGAGAGTGATGCGTACGGAGAAGAATTTGAAGACGGAAATGAAGACAACAGTTGCGCTCAATTTGATGAGGGCTCCGAGGGTTCAGAGTACCACGGAGACAGTCAAGTGAATGAATATGAAAAGGAAGATCCTGAAGTTTCATTGTCTGATCTTCAGAGGGCATCAGAGTTGAACGATGAAGATATTCTGGTCGCTATTAAAGATGATAATTCCGAGGAAACAAATCAAATTGGAAAAGGTTGTGACATGTTTTCTTCAATTATCGATGAACCAGAGAACAATGTAATTGAGAATCATGATGGTGATGCTGTGAATGCTGATGAATCATATAATTCTGTTAAGATAAACCCCAAGACTGCAGCAGATGATGAAGTTAACATGACGATTGTGGAAAGTTTGCATAGTTCTTCTTCAAAGTTGAAGGCTGGAAAAGAATGCAAAATTTCCAAGTCCAGAGTAAAATCTAAGGCCAGCATTTCTCCGGTTAAGAGAAGTATTTCTTCTGAGTCGTCTAAAGATTGTACAAAGAACTCTAATACAAGAGAAAGAGAGGGTACACGAAGAAAAACCGCCATTCCAACTACACAATCAGAATCTACAAATCTGAAGGGAAAATTTGCTCACGAAAGTAGAAGTGGTAAGAAACTTGGTGAACCTCAACCTCCTGCCGTCAAGCCTGAGTCCAGAGGACGCCAAACGGCAAACAGGCTTCACCAAAGAGTCAATTTGACCAAGTCTAATATAAGATCAAGTGTTGCAACTTTCAATTTCAAAAGTTCTGAACGAGCAGAAAGGAGGAAAGAGGCAAGCCACCATGTACTTTCTCTGAATTTGTTGTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

379

Amino Acids

42.19

Weight (kDa)

5.36

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70950
fragaria_vesca	FvH4_4g32430
malus_domestica	MD16G1028200.v1.1 MD16G1028300.v1.1
prunus_persica	Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1
pyrus_communis	pycom13g02400 pycom16g02410
rosa_chinensis	RchiOBHm_Chr4g0441291
rosa_laevigata	RLG00000006105
rosa_multiflora	Rmu_sc0012909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382170
rosa_rugosa	Rorug04G0331900 Rorug04G0332000 Rorug04G0332100 Rorug04G0332100 Rorug04G0332200 Rorug04G0332300
rosa_samantha	Rh4AG384000 Rh4BG398000 Rh4CG413200 Rh4DG390700
rosa_wichuraiana	Rw4G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	184
AciI	CCGC	3 cut(s)	184, 255, 861
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	5 cut(s)	235, 314, 732, 905, 1120
AcuI	CTGAAG	3 cut(s)	428, 444, 917
AcyI	GRCGYC	1 cut(s)	982
AfaI	GTAC	6 cut(s)	259, 305, 380, 814, 847, 1110
AflIII	ACRYGT	1 cut(s)	537
AluBI	AGCT	3 cut(s)	36, 191, 203
AluI	AGCT	3 cut(s)	36, 191, 203
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	5 cut(s)	235, 314, 732, 905, 1120
Asp700I	GAANNNNTTC	2 cut(s)	474, 787
AspLEI	GCGC	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	605, 953, 995
AsuII	TTCGAA	1 cut(s)	198
BanII	GRGCYC	2 cut(s)	24, 365
BbsI	GAAGAC	2 cut(s)	327, 339
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	2 cut(s)	944, 1005
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	250, 648
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	64, 364
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	289, 461, 586
BpiI	GAAGAC	2 cut(s)	327, 339
Bpu14I	TTCGAA	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	982
BsaJI	CCNNGG	3 cut(s)	366, 382, 504
BsaWI	WCCGGW	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	366, 382, 504
BseMII	CTCAG	2 cut(s)	786, 960
BseXI	GCAGC	1 cut(s)	662
BshFI	GGCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	167, 773
BsiWI	CGTACG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	381
BsmI	GAATGC	2 cut(s)	610, 731
BsnI	GGCC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	24, 365
Bsp1407I	TGTACA	1 cut(s)	812
Bsp143I	GATC	3 cut(s)	418, 439, 1037
BspACI	CCGC	3 cut(s)	184, 255, 861
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	2 cut(s)	787, 961
BspDI	ATCGAT	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	64, 364
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	812
BssECI	CCNNGG	3 cut(s)	366, 382, 504
BssMI	GATC	3 cut(s)	418, 439, 1037
BssNI	GRCGYC	1 cut(s)	982
Bst4CI	ACNGT	2 cut(s)	341, 392
Bst6I	CTCTTC	2 cut(s)	12, 138
BstACI	GRCGYC	1 cut(s)	982
BstAUI	TGTACA	1 cut(s)	812
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	763, 1099
BstDEI	CTNAG	3 cut(s)	756, 795, 969
BstDSI	CCRYGG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	421, 442, 1040
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	3 cut(s)	418, 439, 1037
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	250, 648
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	2 cut(s)	327, 339
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	763, 1099
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	1 cut(s)	990
Csp6I	GTAC	6 cut(s)	258, 304, 379, 813, 846, 1109
CviAII	CATG	4 cut(s)	538, 587, 670, 1106
CviQI	GTAC	6 cut(s)	258, 304, 379, 813, 846, 1109
DdeI	CTNAG	3 cut(s)	756, 795, 969
DpnI	GATC	3 cut(s)	420, 441, 1039
DpnII	GATC	3 cut(s)	418, 439, 1037
Eam1104I	CTCTTC	2 cut(s)	12, 138
EarI	CTCTTC	2 cut(s)	12, 138
Eco24I	GRGCYC	2 cut(s)	24, 365
Eco57I	CTGAAG	3 cut(s)	428, 444, 917
EcoT38I	GRGCYC	2 cut(s)	24, 365
FaeI	CATG	4 cut(s)	541, 590, 673, 1109
FalI	AAGNNNNNCTT	2 cut(s)	775, 807
FatI	CATG	4 cut(s)	537, 586, 669, 1105
Fnu4HI	GCNGC	1 cut(s)	651
FriOI	GRGCYC	2 cut(s)	24, 365
Fsp4HI	GCNGC	1 cut(s)	651
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	651
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	2 cut(s)	167, 773
HgaI	GACGC	1 cut(s)	990
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	982
Hin1II	CATG	4 cut(s)	541, 590, 673, 1109
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	7 cut(s)	47, 583, 614, 797, 884, 971, 1011
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	2 cut(s)	167, 773
HphI	GGTGA	3 cut(s)	605, 953, 995
Hpy166II	GTNNAC	3 cut(s)	667, 848, 944
Hpy188III	TCNNGA	7 cut(s)	76, 211, 422, 587, 744, 914, 975
Hpy8I	GTNNAC	3 cut(s)	667, 848, 944
HpyAV	CCTTC	2 cut(s)	706, 892
HpyCH4III	ACNGT	2 cut(s)	341, 392
HpyCH4V	TGCA	4 cut(s)	650, 691, 729, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	3 cut(s)	756, 795, 969
Hsp92I	GRCGYC	1 cut(s)	982
Hsp92II	CATG	4 cut(s)	541, 590, 673, 1109
HspAI	GCGC	1 cut(s)	345
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	418, 439, 1037
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	3 cut(s)	289, 461, 586
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	420, 441, 1039
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	3 cut(s)	418, 439, 1037
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	24, 365
MlyI	GAGTC	4 cut(s)	41, 806, 980, 1020
MmeI	TCCRAC	1 cut(s)	893
MroXI	GAANNNNTTC	2 cut(s)	474, 787
MseI	TTAA	4 cut(s)	489, 630, 666, 777
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	2 cut(s)	167, 773
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	2 cut(s)	610, 731
MwoI	GCNNNNNNNGC	1 cut(s)	605
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	418, 439, 1037
NlaIII	CATG	4 cut(s)	541, 590, 673, 1109
NlaIV	GGNNCC	2 cut(s)	64, 364
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	198
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	2 cut(s)	610, 731
PdmI	GAANNNNTTC	2 cut(s)	474, 787
PfeI	GAWTC	3 cut(s)	583, 614, 884
Pfl23II	CGTACG	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	1024
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	4 cut(s)	41, 805, 979, 1019
PpsI	GAGTC	4 cut(s)	41, 805, 979, 1019
PscI	ACATGT	1 cut(s)	537
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	64, 364
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	1024
RsaI	GTAC	6 cut(s)	259, 305, 380, 814, 847, 1110
RsaNI	GTAC	6 cut(s)	258, 304, 379, 813, 846, 1109
RseI	CAYNNNNRTG	1 cut(s)	591
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	489, 630, 666, 777
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	3 cut(s)	418, 439, 1037
SchI	GAGTC	4 cut(s)	41, 806, 980, 1020
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	24, 365
SfaNI	GCATC	3 cut(s)	289, 461, 586
SfcI	CTRYAG	2 cut(s)	250, 648
SfuI	TTCGAA	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	591
SsiI	CCGC	3 cut(s)	184, 255, 861
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	341, 392
TaqI	TCGA	2 cut(s)	198, 555
TatI	WGTACW	2 cut(s)	812, 1108
TfiI	GAWTC	3 cut(s)	583, 614, 884
Tru1I	TTAA	4 cut(s)	489, 630, 666, 777
Tru9I	TTAA	4 cut(s)	489, 630, 666, 777
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	8 cut(s)	345, 417, 420, 423, 483, 573, 627, 675
TspGWI	ACGGA	3 cut(s)	321, 339, 399
Tth111I	GACNNNGTC	1 cut(s)	1024
XapI	RAATTY	5 cut(s)	235, 314, 732, 905, 1120
XceI	RCATGY	1 cut(s)	541
XmnI	GAANNNNTTC	2 cut(s)	474, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.