Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005491

Physical Location & Seq

Genomic Coordinates Reverse (-)

54886676 .. 54890741

Gene Structure 4066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG398000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTGGGGAAATAGAAGAACCCTTTTGTTTTAGCTTTCAGCCAAAGTCTATACATTCTGGCTCCATATCATTTGGGAGGTTCGAAAACGAAGGCTTATCTTGGGAAAGGAGGTCTGCTTTCTCACATAACAGATATGTTGAAGAGGTTGAGAAATGCATGAAACCAGGTTCAGTTATTGAGAGGAAAGCTTATTTTGAAGCTCATTTTAAGAAGAAGGGTCTTCCCAGACCAAATTTAGCCGAGTGTTATAGTGGTACATGCTACCAAGTCGGCGAGAATGATGTATCAGAGAGTGATGACGCTTACAGAGAAGAATGTGAACTTGAAAATGAAGGGAGCAGTTATGCTGAATCAGATGACCAAAGGTCGGAGGGTTCTGTGTATCTTGGAGATTTTGAAGTCACAGAACGTGAAAAAGAAGAAGATACTGAACTTCCGTCCTCTGACCCTCAGAGGGCACCTGCATTGAATCATATTGCTATTTTGGTGGATGGTGCTGTTGAAGATGTTGATTTTGAGGAAGCGCATCAACCCGAGAAAGGTTGTGCAAAATCTACTTCGATTGTTGAGGAACTGGAGAGAGATGCAAATGAGAATCATAATGGTGATGCAGTGAATGCTGGGGAGCCGCCTAAGAGTGTTGATATATGTTCAAATACTGAACCAGCTGAGTGTGTTGATAAAACCATTGTGGAAAGTGGGAAAAGTACTTCTTCAAAGTTGAATGCTGTAAAAGAATCCAAATTTGTAAAGCCCAAGGCCAGCATTTCTCAGGTCCAAAGAAACATTTCTGCTAAGGGATCTGGTAAATATCCTATAGAGAATTCCAGTACTGGACAAAGAGAGCGTACACGAAGAACCGATAAAGAAAAGCTCCCATTAAAGACTGCAATGCCAACTAATAAGGATTCTGTACGCAGAACTCCGAAGTTAGAGGACTCCATGAAGGGAAAATCTTTAAATGAGAGTAAAAGTGTTAAAGAGTCATCGCATAAGAAGCTCGGTGAACTTCAACCTTCTGCATTCAAGCCTGAATCCAGAGGACGCCAAATGACAAACAGGTACAGGTTCCATCAGAATTTTCCCATTGAATACTATTTGTGTTTCAATTTTGAACTGTTGAATTTTTATCAAGTCAAGTCACTTTTCGTACCTTCTATAGGGTTAGTAACGGAGCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

395

Amino Acids

44.44

Weight (kDa)

5.29

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70950
fragaria_vesca	FvH4_4g32430
malus_domestica	MD16G1028200.v1.1 MD16G1028300.v1.1
prunus_persica	Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1 Prupe.1G324700_v2.0.a1
pyrus_communis	pycom13g02400 pycom16g02410
rosa_chinensis	RchiOBHm_Chr4g0441291
rosa_laevigata	RLG00000006105
rosa_multiflora	Rmu_sc0012909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382170
rosa_rugosa	Rorug04G0331900 Rorug04G0332000 Rorug04G0332100 Rorug04G0332100 Rorug04G0332200 Rorug04G0332300
rosa_samantha	Rh4AG384000 Rh4BG398000 Rh4CG413200 Rh4DG390700
rosa_wichuraiana	Rw4G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	472
Acc36I	ACCTGC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	460
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	5 cut(s)	235, 746, 826, 1081, 1126
AcyI	GRCGYC	1 cut(s)	1048
AfaI	GTAC	7 cut(s)	259, 712, 835, 853, 918, 1067, 1155
AfiI	CCNNNNNNNGG	4 cut(s)	370, 457, 542, 1163
AhdI	GACNNNNNGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	6 cut(s)	36, 191, 203, 671, 877, 1003
AluI	AGCT	6 cut(s)	36, 191, 203, 671, 877, 1003
AlwI	GGATC	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	762
ApoI	RAATTY	5 cut(s)	235, 746, 826, 1081, 1126
Asp700I	GAANNNNTTC	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	2 cut(s)	620, 1019
AsuII	TTCGAA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	215
BccI	CCATC	2 cut(s)	488, 1083
BciT130I	CCWGG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	819, 1161
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
BmcAI	AGTACT	2 cut(s)	712, 835
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	778
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	5 cut(s)	64, 462, 630, 1073, 1179
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	538, 577, 601
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu14I	TTCGAA	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	1048
BsaJI	CCNNGG	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	4 cut(s)	370, 457, 542, 1163
Bse1I	ACTGG	3 cut(s)	582, 831, 841
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	4 cut(s)	370, 457, 542, 1163
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	3 cut(s)	467, 663, 788
BseNI	ACTGG	3 cut(s)	582, 831, 841
BseSI	GKGCMC	1 cut(s)	463
BseYI	CCCAGC	2 cut(s)	5, 623
BshFI	GGCC	1 cut(s)	764
BshNI	GGYRCC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	536
BslI	CCNNNNNNNGG	4 cut(s)	370, 457, 542, 1163
BsmI	GAATGC	3 cut(s)	625, 733, 1025
BsnI	GGCC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	1 cut(s)	803
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	3 cut(s)	466, 664, 787
BspLI	GGNNCC	5 cut(s)	64, 462, 630, 1073, 1179
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	811
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	582, 831, 841
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	1 cut(s)	803
BssNI	GRCGYC	1 cut(s)	1048
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	1122
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	1048
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	766
BstDEI	CTNAG	5 cut(s)	453, 636, 672, 774, 798
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	1 cut(s)	806
BstMBI	GATC	1 cut(s)	803
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 1000
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	819, 1161
BstSLI	GKGCMC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
BsuRI	GGCC	1 cut(s)	764
BtgZI	GCGATG	1 cut(s)	975
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	766
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	2 cut(s)	311, 1056
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	7 cut(s)	258, 711, 834, 852, 917, 1066, 1154
CviAII	CATG	3 cut(s)	160, 261, 946
CviQI	GTAC	7 cut(s)	258, 711, 834, 852, 917, 1066, 1154
DdeI	CTNAG	5 cut(s)	453, 636, 672, 774, 798
DpnI	GATC	1 cut(s)	805
DpnII	GATC	1 cut(s)	803
DraI	TTTAAA	1 cut(s)	963
DriI	GACNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	778
Eco88I	CYCGRG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	3 cut(s)	163, 264, 949
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FatI	CATG	3 cut(s)	159, 260, 945
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	632
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	632
GsaI	CCCAGC	2 cut(s)	9, 627
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	764
HgaI	GACGC	2 cut(s)	311, 1056
HhaI	GCGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	1048
Hin1II	CATG	3 cut(s)	163, 264, 949
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	8 cut(s)	353, 472, 598, 740, 911, 941, 986, 1037
HphI	GGTGA	2 cut(s)	620, 1019
Hpy166II	GTNNAC	3 cut(s)	323, 854, 1010
Hpy188I	TCNGA	7 cut(s)	292, 358, 373, 448, 456, 930, 1080
Hpy188III	TCNNGA	1 cut(s)	1041
Hpy8I	GTNNAC	3 cut(s)	323, 854, 1010
HpyAV	CCTTC	6 cut(s)	86, 211, 329, 943, 1029, 1167
HpyCH4III	ACNGT	1 cut(s)	1122
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	7 cut(s)	159, 467, 551, 590, 614, 893, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 1000
HpyF3I	CTNAG	5 cut(s)	453, 636, 672, 774, 798
HpySE526I	ACGT	1 cut(s)	412
Hsp92I	GRCGYC	1 cut(s)	1048
Hsp92II	CATG	3 cut(s)	163, 264, 949
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	1 cut(s)	803
LmnI	GCTCC	5 cut(s)	68, 339, 628, 882, 1177
LweI	GCATC	3 cut(s)	538, 577, 601
MabI	ACCWGGT	1 cut(s)	166
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	3 cut(s)	403, 1143, 1171
MalI	GATC	1 cut(s)	805
MboI	GATC	1 cut(s)	803
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	7 cut(s)	235, 746, 826, 1081, 1111, 1126, 1182
MlyI	GAGTC	2 cut(s)	935, 995
MmeI	TCCRAC	1 cut(s)	351
Mph1103I	ATGCAT	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	4 cut(s)	210, 884, 962, 981
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	3 cut(s)	625, 733, 1025
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	620, 1000
NdeII	GATC	1 cut(s)	803
NlaIII	CATG	3 cut(s)	163, 264, 949
NlaIV	GGNNCC	5 cut(s)	64, 462, 630, 1073, 1179
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	403, 1143
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	472
PctI	GAATGC	3 cut(s)	625, 733, 1025
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	6 cut(s)	353, 472, 598, 740, 911, 1037
PkrI	GCNGC	1 cut(s)	633
PleI	GAGTC	2 cut(s)	935, 994
PpsI	GAGTC	2 cut(s)	935, 994
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	2 cut(s)	5, 623
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	5 cut(s)	64, 462, 630, 1073, 1179
PspPI	GGNCC	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	7 cut(s)	259, 712, 835, 853, 918, 1067, 1155
RsaNI	GTAC	7 cut(s)	258, 711, 834, 852, 917, 1066, 1154
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	4 cut(s)	210, 884, 962, 981
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	1 cut(s)	803
Sau96I	GGNCC	1 cut(s)	778
ScaI	AGTACT	2 cut(s)	712, 835
SchI	GAGTC	2 cut(s)	935, 995
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	463
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	538, 577, 601
SfcI	CTRYAG	2 cut(s)	819, 1161
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	7 cut(s)	235, 746, 826, 1081, 1111, 1126, 1182
SsiI	CCGC	1 cut(s)	632
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	1 cut(s)	1122
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	2 cut(s)	84, 563
TasI	AATT	7 cut(s)	235, 746, 826, 1081, 1111, 1126, 1182
TatI	WGTACW	2 cut(s)	710, 833
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	6 cut(s)	353, 472, 598, 740, 911, 1037
Tru1I	TTAA	4 cut(s)	210, 884, 962, 981
Tru9I	TTAA	4 cut(s)	210, 884, 962, 981
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	403, 1143
Tsp45I	GTSAC	2 cut(s)	403, 1143
TspDTI	ATGAA	3 cut(s)	176, 348, 962
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	778
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	5 cut(s)	235, 746, 826, 1081, 1126
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	790
ZrmI	AGTACT	2 cut(s)	712, 835
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.