Rmu_sc0012909.1_g000007

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012909.1
Physical Location & Seq
Forward (+)
56409 .. 59283
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012909.1_g000007.1.cds

Sequence Viewer

Length: 1713 bp
atggctggggaaatagaagaacccttttgttttagctttcagccaaagtctatacattctggctccatatcatttgggaggtttgaaaacgaaggcttatcttgggaaaggaggtctgctttctcacataacagatatgttgaagaggttgagaaatgcatgaaaccaggttcagttattgagaggaaagcttattttgaagctcattttaagaagaagggtcttcccagaccaaatttagcggagtgttatagtggtacatgctaccaagtcggcgagaatgatgtatcagagagtgatgacgcttacagagaagaatgtgaacttgaaaatgaagggagcagttatgcagaatcagatgaccaaaggtcggagggttctgtgtatcttggagattttgaagtcacagaatgtgaaaaagaagaagatactgaacttccgtcctctgaccctcagagggcacctgcattgaatcatattgctattttggtggatggtgctgttgaagatgttaattttgaggaagcgcatcaacccgagaaaggttgtgcaaaatctacttcgattgttgaggaaatggagagagatgcaaatgagaatcataacggtgatgcagtgaatgctgaggagccgcctaagagtgttgatatatgttcaactactgaaccagctgagtgtgttgataaaaccattgtggaaagtgggaaaagtacttcttcaaagttgaaggctgtaaaagaatccaaatttgtaaagcctaaggccagcatttctcaggtccaaataaacatttctgctaagggatctagtaaatatcctatagagaattccaatactggacaaagagagcgtacacgaagaacgggtaaagaaaagctcccattaaagactgcaatgccaactaataagcattctgtacgtagaactccgaagttagaggactccatgaagggaaaatctttaaatgagagtaaaagtgttaaagagtcatcgcttaagaagcttggtgaacttcaaccttctgcattcaagcctgaatccagaggacgccaaatgacaaacaggaacagggttagtaacggagccaatttgactaagtctgatacaagatcaagtgttacaactttcaaattcaaaacttctgagcgagcagaaaagaggaaagagttctttatgaagttcgaagaaaacatgcacgctaaggaagatgaaatgaacaaggtccaagcaagaaaacagtccgttactggattaatgctgttgcaggaaaggatagaagctgagacgaagcaattccggaaagccctcaacttcaaagcagcaccaatgccttctttctacaatgtagctagcgcttcgaggcctgatgggagcatgattgtctcaaccaaatcctctgaagtagaaaaaagccgagacaatgctgctgtaagatcgacatcagcttcagagtcagggaagagtgaagctgccacaggagaaactaaatgcaagatggctgaggcatttgtaacaaaaagtgaagtcactactgtgcagaggagtcgagcattcgagagcaggaaggcggcgaaaaatgagaaaaacgtggggaagcagaaagttggagcccaaagaaatagcagagagatggtgaggaagggtactacgaaaggcgtggtctttggaagcagttccagaatgagtcatttagcagttggtgttgcctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

63.25

Weight (kDa)

8.56

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 1296
AciI CCGC 3 cut(s) 242, 632, 1568
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 4 cut(s) 235, 746, 826, 1130
AcuI CTGAAG 2 cut(s) 1419, 1431
AcyI GRCGYC 1 cut(s) 1048
AfaI GTAC 5 cut(s) 259, 712, 853, 918, 1645
AfeI AGCGCT 1 cut(s) 1354
AfiI CCNNNNNNNGG 3 cut(s) 370, 457, 542
AflII CTTAAG 1 cut(s) 995
AhdI GACNNNNNGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 166
AleI CACNNNNGTG 1 cut(s) 1532
Alw26I GTCTC 3 cut(s) 1277, 1387, 1410
AlwI GGATC 1 cut(s) 811
Ama87I CYCGRG 1 cut(s) 536
Aor13HI TCCGGA 1 cut(s) 1296
Aor51HI AGCGCT 1 cut(s) 1354
AoxI GGCC 2 cut(s) 762, 1361
ApeKI GCWGC 3 cut(s) 1319, 1424, 1469
ApoI RAATTY 4 cut(s) 235, 746, 826, 1130
AseI ATTAAT 1 cut(s) 1253
Asp700I GAANNNNTTC 3 cut(s) 1166, 1292, 1672
AspLEI GCGC 2 cut(s) 529, 1355
AspS9I GGNCC 2 cut(s) 778, 1222
AsuHPI GGTGA 3 cut(s) 620, 1019, 1645
AsuII TTCGAA 1 cut(s) 1182
AsuNHI GCTAGC 1 cut(s) 1349
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 2 cut(s) 778, 1222
AxyI CCTNAGG 1 cut(s) 759
BaeGI GKGCMC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 1612
BbsI GAAGAC 1 cut(s) 215
BbvCI CCTCAGC 2 cut(s) 624, 1500
BbvI GCAGC 3 cut(s) 1331, 1411, 1456
BccI CCATC 4 cut(s) 488, 1361, 1489, 1624
BcgI CGANNNNNNTGC 2 cut(s) 1526, 1560
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 1277, 1387, 1410
BfaI CTAG 2 cut(s) 807, 1350
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 1356
BfrI CTTAAG 1 cut(s) 995
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 5 cut(s) 632, 1320, 1425, 1470, 1569
BlsI GCNGC 5 cut(s) 633, 1321, 1426, 1471, 1570
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 778, 1222
BmeRI GACNNNNNGTC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 2 cut(s) 778, 1222
BmiI GGNNCC 5 cut(s) 64, 462, 630, 1084, 1609
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 538, 577, 601
BmtI GCTAGC 1 cut(s) 1353
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 4 cut(s) 624, 798, 1200, 1500
Bpu14I TTCGAA 1 cut(s) 1182
BsaAI YACGTR 1 cut(s) 920
BsaBI GATNNNNATC 1 cut(s) 1438
BsaHI GRCGYC 1 cut(s) 1048
BsaWI WCCGGW 1 cut(s) 1296
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 457, 542
Bse1I ACTGG 2 cut(s) 841, 1252
Bse21I CCTNAGG 1 cut(s) 759
Bse3DI GCAATG 1 cut(s) 900
Bse8I GATNNNNATC 1 cut(s) 1438
BseAI TCCGGA 1 cut(s) 1296
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 1438
BseLI CCNNNNNNNGG 3 cut(s) 370, 457, 542
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 7 cut(s) 467, 615, 663, 788, 1134, 1272, 1491
BseNI ACTGG 2 cut(s) 841, 1252
BseRI GAGGAG 2 cut(s) 641, 1555
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 3 cut(s) 1331, 1411, 1456
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 1556
BshFI GGCC 2 cut(s) 764, 1363
BshNI GGYRCC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 1 cut(s) 1297
BslI CCNNNNNNNGG 3 cut(s) 370, 457, 542
BsmAI GTCTC 3 cut(s) 1277, 1387, 1410
BsmBI CGTCTC 1 cut(s) 1277
BsmI GAATGC 4 cut(s) 625, 910, 1025, 1550
BsnI GGCC 2 cut(s) 764, 1363
BsoBI CYCGRG 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 1182
Bsp1286I GDGCHC 2 cut(s) 463, 1612
Bsp13I TCCGGA 1 cut(s) 1296
Bsp143I GATC 3 cut(s) 803, 1109, 1433
BspACI CCGC 3 cut(s) 242, 632, 1568
BspANI GGCC 2 cut(s) 764, 1363
BspCNI CTCAG 7 cut(s) 466, 616, 664, 787, 1135, 1273, 1492
BspEI TCCGGA 1 cut(s) 1296
BspHI TCATGA 1 cut(s) 1709
BspLI GGNNCC 5 cut(s) 64, 462, 630, 1084, 1609
BspMI ACCTGC 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 1353
BspPI GGATC 1 cut(s) 811
BspT104I TTCGAA 1 cut(s) 1182
BspT107I GGYRCC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 2 cut(s) 841, 1252
BssMI GATC 3 cut(s) 803, 1109, 1433
BssNI GRCGYC 1 cut(s) 1048
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 608, 1239, 1534
Bst6I CTCTTC 2 cut(s) 138, 1454
BstACI GRCGYC 1 cut(s) 1048
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 1182
BstC8I GCNNGC 4 cut(s) 766, 1149, 1197, 1351
BstF5I GGATG 1 cut(s) 499
BstH2I RGCGCY 1 cut(s) 1356
BstHHI GCGC 2 cut(s) 529, 1355
BstKTI GATC 3 cut(s) 806, 1112, 1436
BstMAI GTCTC 3 cut(s) 1277, 1387, 1410
BstMBI GATC 3 cut(s) 803, 1109, 1433
BstMWI GCNNNNNNNGC 2 cut(s) 620, 1000
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 264, 1195
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 463
BstSNI TACGTA 1 cut(s) 920
BstV1I GCAGC 3 cut(s) 1331, 1411, 1456
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 2 cut(s) 764, 1363
BtgZI GCGATG 1 cut(s) 975
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 4 cut(s) 766, 1149, 1197, 1351
CciI TCATGA 1 cut(s) 1709
CfoI GCGC 2 cut(s) 529, 1355
Cfr13I GGNCC 2 cut(s) 778, 1222
CseI GACGC 2 cut(s) 311, 1056
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 5 cut(s) 258, 711, 852, 917, 1644
CviAII CATG 6 cut(s) 160, 261, 946, 1192, 1375, 1710
CviQI GTAC 5 cut(s) 258, 711, 852, 917, 1644
DpnI GATC 3 cut(s) 805, 1111, 1435
DpnII GATC 3 cut(s) 803, 1109, 1433
DraI TTTAAA 1 cut(s) 963
DriI GACNNNNNGTC 1 cut(s) 367
Eam1104I CTCTTC 2 cut(s) 138, 1454
Eam1105I GACNNNNNGTC 1 cut(s) 367
EarI CTCTTC 2 cut(s) 138, 1454
Eco105I TACGTA 1 cut(s) 920
Eco147I AGGCCT 1 cut(s) 1363
Eco24I GRGCYC 1 cut(s) 1612
Eco47I GGWCC 2 cut(s) 778, 1222
Eco47III AGCGCT 1 cut(s) 1354
Eco57I CTGAAG 2 cut(s) 1419, 1431
Eco81I CCTNAGG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 1612
Esp3I CGTCTC 1 cut(s) 1277
FaeI CATG 6 cut(s) 163, 264, 949, 1195, 1378, 1713
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FatI CATG 6 cut(s) 159, 260, 945, 1191, 1374, 1709
Fnu4HI GCNGC 5 cut(s) 632, 1320, 1425, 1470, 1569
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 1612
Fsp4HI GCNGC 5 cut(s) 632, 1320, 1425, 1470, 1569
FspBI CTAG 2 cut(s) 807, 1350
GlaI GCGC 2 cut(s) 528, 1354
GluI GCNGC 5 cut(s) 632, 1320, 1425, 1470, 1569
GsaI CCCAGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 1356
HaeIII GGCC 2 cut(s) 764, 1363
HapII CCGG 1 cut(s) 1297
HgaI GACGC 2 cut(s) 311, 1056
HhaI GCGC 2 cut(s) 529, 1355
Hin1I GRCGYC 1 cut(s) 1048
Hin1II CATG 6 cut(s) 163, 264, 949, 1195, 1378, 1713
Hin6I GCGC 2 cut(s) 527, 1353
HinP1I GCGC 2 cut(s) 527, 1353
HindIII AAGCTT 2 cut(s) 189, 1001
HpaII CCGG 1 cut(s) 1297
HphI GGTGA 3 cut(s) 620, 1019, 1645
Hpy166II GTNNAC 3 cut(s) 323, 854, 1010
Hpy188III TCNNGA 5 cut(s) 1041, 1297, 1555, 1677, 1710
Hpy8I GTNNAC 3 cut(s) 323, 854, 1010
HpyAV CCTTC 9 cut(s) 86, 211, 329, 721, 943, 1029, 1341, 1558, 1633
HpyCH4III ACNGT 3 cut(s) 608, 1239, 1534
HpyCH4IV ACGT 2 cut(s) 919, 1587
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 1000
HpySE526I ACGT 2 cut(s) 919, 1587
Hsp92I GRCGYC 1 cut(s) 1048
Hsp92II CATG 6 cut(s) 163, 264, 949, 1195, 1378, 1713
HspAI GCGC 2 cut(s) 527, 1353
Kpn2I TCCGGA 1 cut(s) 1296
Kzo9I GATC 3 cut(s) 803, 1109, 1433
LmnI GCTCC 7 cut(s) 68, 339, 628, 882, 1082, 1371, 1607
Lsp1109I GCAGC 3 cut(s) 1331, 1411, 1456
LweI GCATC 3 cut(s) 538, 577, 601
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 2 cut(s) 807, 1350
MaeII ACGT 2 cut(s) 919, 1587
MaeIII GTNAC 6 cut(s) 403, 1076, 1117, 1243, 1510, 1525
MalI GATC 3 cut(s) 805, 1111, 1435
MboI GATC 3 cut(s) 803, 1109, 1433
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 2 cut(s) 463, 1612
MluCI AATT 7 cut(s) 235, 514, 746, 826, 1087, 1130, 1292
MlyI GAGTC 5 cut(s) 935, 995, 1460, 1552, 1693
MmeI TCCRAC 2 cut(s) 351, 1585
Mph1103I ATGCAT 1 cut(s) 161
MroI TCCGGA 1 cut(s) 1296
MroXI GAANNNNTTC 3 cut(s) 1166, 1292, 1672
MseI TTAA 7 cut(s) 210, 513, 884, 962, 981, 996, 1253
MslI CAYNNNNRTG 2 cut(s) 606, 1532
MspA1I CMGCKG 1 cut(s) 671
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 1 cut(s) 1297
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 4 cut(s) 625, 910, 1025, 1550
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 620, 1000
NdeII GATC 3 cut(s) 803, 1109, 1433
NheI GCTAGC 1 cut(s) 1349
NlaIII CATG 6 cut(s) 163, 264, 949, 1195, 1378, 1713
NlaIV GGNNCC 5 cut(s) 64, 462, 630, 1084, 1609
NmeAIII GCCGAG 1 cut(s) 1439
NmuCI GTSAC 2 cut(s) 403, 1525
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 2 cut(s) 264, 1195
NspV TTCGAA 1 cut(s) 1182
OliI CACNNNNGTG 1 cut(s) 1532
PagI TCATGA 1 cut(s) 1709
PaqCI CACCTGC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 1363
PctI GAATGC 4 cut(s) 625, 910, 1025, 1550
PdmI GAANNNNTTC 3 cut(s) 1166, 1292, 1672
PfeI GAWTC 5 cut(s) 353, 472, 598, 740, 1037
PflFI GACNNNGTC 1 cut(s) 1096
PkrI GCNGC 5 cut(s) 633, 1321, 1426, 1471, 1570
PleI GAGTC 5 cut(s) 935, 994, 1459, 1551, 1692
PpsI GAGTC 5 cut(s) 935, 994, 1459, 1551, 1692
Ppu21I YACGTR 1 cut(s) 920
PshBI ATTAAT 1 cut(s) 1253
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 5 cut(s) 64, 462, 630, 1084, 1609
PspPI GGNCC 2 cut(s) 778, 1222
PsuI RGATCY 1 cut(s) 803
PsyI GACNNNGTC 1 cut(s) 1096
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 5 cut(s) 259, 712, 853, 918, 1645
RsaNI GTAC 5 cut(s) 258, 711, 852, 917, 1644
RseI CAYNNNNRTG 2 cut(s) 606, 1532
SaqAI TTAA 7 cut(s) 210, 513, 884, 962, 981, 996, 1253
SatI GCNGC 5 cut(s) 632, 1320, 1425, 1470, 1569
Sau3AI GATC 3 cut(s) 803, 1109, 1433
Sau96I GGNCC 2 cut(s) 778, 1222
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 5 cut(s) 935, 995, 1460, 1552, 1693
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 463, 1612
SexAI ACCWGGT 1 cut(s) 166
SfaNI GCATC 3 cut(s) 538, 577, 601
SfcI CTRYAG 1 cut(s) 819
SfuI TTCGAA 1 cut(s) 1182
SinI GGWCC 2 cut(s) 778, 1222
SmiMI CAYNNNNRTG 2 cut(s) 606, 1532
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
SnaBI TACGTA 1 cut(s) 920
Sse9I AATT 7 cut(s) 235, 514, 746, 826, 1087, 1130, 1292
SseBI AGGCCT 1 cut(s) 1363
SsiI CCGC 3 cut(s) 242, 632, 1568
SspMI CTAG 2 cut(s) 807, 1350
StuI AGGCCT 1 cut(s) 1363
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 608, 1239, 1534
TaiI ACGT 2 cut(s) 922, 1590
TaqI TCGA 6 cut(s) 563, 1182, 1358, 1436, 1546, 1554
TasI AATT 7 cut(s) 235, 514, 746, 826, 1087, 1130, 1292
TatI WGTACW 1 cut(s) 710
TauI GCSGC 2 cut(s) 634, 1571
TfiI GAWTC 5 cut(s) 353, 472, 598, 740, 1037
Tru1I TTAA 7 cut(s) 210, 513, 884, 962, 981, 996, 1253
Tru9I TTAA 7 cut(s) 210, 513, 884, 962, 981, 996, 1253
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 403, 1525
TseI GCWGC 3 cut(s) 1319, 1424, 1469
Tsp45I GTSAC 2 cut(s) 403, 1525
TspDTI ATGAA 6 cut(s) 176, 348, 962, 1190, 1224, 1229
TspGWI ACGGA 3 cut(s) 429, 1095, 1231
TspRI CASTG 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 1096
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 778, 1222
VspI ATTAAT 1 cut(s) 1253
XapI RAATTY 4 cut(s) 235, 746, 826, 1130
XceI RCATGY 2 cut(s) 264, 1195
XmnI GAANNNNTTC 3 cut(s) 1166, 1292, 1672
XspI CTAG 2 cut(s) 807, 1350
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.