FvH4_4g32420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016083
Physical Location & Seq
Forward (+)
31069366 .. 31069737
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32420.t1

Sequence Viewer

Length: 372 bp
ATGTCCGACAATCCATGCGCATATCCATGTTATCCTCCACCTACCGGTACTACTACAACTCCAACTCCGGTGACCACCACGCCGCCTCCGCCTACCACAACAACAACGTATCCACCTCCGGTCTACCCTACTCCGACTGGATACTACCCTTACAACCCTCCGCCAAGTGATTACAACGGCGGTGGTGGCTACGGCTACGGTCCTCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCATGGAGACGCCTCATCAGCAACCTCATCCCACCTCACTAGGTCAACGCTCATGGCGATCACCACTACAGCCACCAATATTCTTATCATACTCATCTTTTTTGTTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.12

Weight (kDa)

5.71

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 19
AccI GTMKAC 1 cut(s) 123
AciI CCGC 4 cut(s) 83, 89, 161, 180
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 44
AgeI ACCGGT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 258
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 82, 310
AvaII GGWCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 259
BceAI ACGGC 2 cut(s) 193, 208
BciVI GTATCC 2 cut(s) 120, 134
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 324
BfuI GTATCC 2 cut(s) 120, 134
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 267
BsaWI WCCGGW 3 cut(s) 44, 67, 118
BsaXI ACNNNNNCTCC 6 cut(s) 43, 49, 70, 73, 79, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 195, 198
BshTI ACCGGT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 45, 68, 119
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 4 cut(s) 83, 89, 161, 180
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 315
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 3 cut(s) 88, 186, 275
BstPI GGTNACC 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 324
BsuI GTATCC 2 cut(s) 120, 134
BtsCI GGATG 1 cut(s) 284
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 48
CspAI ACCGGT 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 5 cut(s) 15, 27, 251, 260, 310
CviJI RGCY 3 cut(s) 189, 195, 329
CviKI_1 RGCY 3 cut(s) 189, 195, 329
CviQI GTAC 1 cut(s) 48
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EciI GGCGGA 2 cut(s) 78, 150
Eco47I GGWCC 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 5 cut(s) 18, 30, 254, 263, 313
FaiI YATR 7 cut(s) 16, 22, 28, 252, 261, 311, 347
FatI CATG 5 cut(s) 14, 26, 250, 259, 309
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 83
FspAI RTGCGCAY 1 cut(s) 19
FspBI CTAG 1 cut(s) 297
FspI TGCGCA 1 cut(s) 19
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 83
HapII CCGG 3 cut(s) 45, 68, 119
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 18, 30, 254, 263, 313
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HpaII CCGG 3 cut(s) 45, 68, 119
HphI GGTGA 2 cut(s) 82, 310
Hpy166II GTNNAC 2 cut(s) 124, 303
Hpy188I TCNGA 2 cut(s) 7, 135
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 124, 303
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 186, 275
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 18, 30, 254, 263, 313
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 6 cut(s) 58, 81, 123, 132, 225, 236
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 259
MmeI TCCRAC 3 cut(s) 30, 86, 158
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 25
MspI CCGG 3 cut(s) 45, 68, 119
MwoI GCNNNNNNNGC 3 cut(s) 88, 186, 275
NdeII GATC 1 cut(s) 315
NlaIII CATG 5 cut(s) 18, 30, 254, 263, 313
NmuCI GTSAC 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 200
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 259
SetI ASST 6 cut(s) 43, 110, 118, 284, 294, 302
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 25
SsiI CCGC 4 cut(s) 83, 89, 161, 180
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 110
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.