Rh4BG397900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016083
Physical Location & Seq
Forward (+)
54885076 .. 54886544
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG397900.1

Sequence Viewer

Length: 456 bp
ATGTCTCCAAAGACAAAACCTTTTCTCCCAACCCTCCTCTTGGTGATGATCTCTATCATTCTGATCAACTTTCCCATGGCAACAATGTCCGACAATCCATGCGCATACCCGTGTTATCCTCCACCTACCGGTACTACTACTACTCCAACTCCGGTGATCACCACTACACCGCCTCAGCCTACCACATCGACAACGTACCCGCCTCCGGCCTACCCTACGCCGACTGGATATTACCCTTACAACCCTCCGCCGAGTACATATAACGGCGGTGGAGGCTACGGCTACGGTCCCCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCTTGGAGACGCCTCATCAGCAACCTCATCCCACCTCACTAGGTCAACGCTCATGGCAATAGCCACCGCCACCAATCTTCTTGTCATACTCATGTTTCTTCTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.17

Weight (kDa)

7.74

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
AciI CCGC 5 cut(s) 170, 200, 248, 267, 411
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 133, 197, 256
AfiI CCNNNNNNNGG 3 cut(s) 40, 128, 205
AgeI ACCGGT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 9, 345
AoxI GGCC 1 cut(s) 207
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 55, 151, 166
AvaII GGWCC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 346
BbvCI CCTCAGC 1 cut(s) 174
BceAI ACGGC 2 cut(s) 280, 295
BclI TGATCA 2 cut(s) 63, 156
BcoDI GTCTC 2 cut(s) 9, 345
BfaI CTAG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 128, 151
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 127, 133, 157, 163
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 128, 205
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 371
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 40, 128, 205
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 26, 285
BshFI GGCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 3 cut(s) 129, 152, 206
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 3 cut(s) 40, 128, 205
BsmAI GTCTC 2 cut(s) 9, 345
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 48, 63, 156
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 5 cut(s) 170, 200, 248, 267, 411
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 48, 63, 156
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 51, 66, 159
BstMAI GTCTC 2 cut(s) 9, 345
BstMBI GATC 3 cut(s) 48, 63, 156
BstMWI GCNNNNNNNGC 2 cut(s) 273, 362
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 371
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 132, 196, 255
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 5 cut(s) 76, 99, 338, 397, 436
CviJI RGCY 5 cut(s) 178, 209, 276, 282, 407
CviKI_1 RGCY 5 cut(s) 178, 209, 276, 282, 407
CviQI GTAC 3 cut(s) 132, 196, 255
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 50, 65, 158
DpnII GATC 3 cut(s) 48, 63, 156
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 5 cut(s) 79, 102, 341, 400, 439
FaiI YATR 9 cut(s) 77, 100, 106, 259, 261, 339, 398, 431, 437
FaqI GGGAC 1 cut(s) 273
FatI CATG 5 cut(s) 75, 98, 337, 396, 435
FauI CCCGC 1 cut(s) 207
FbaI TGATCA 2 cut(s) 63, 156
FokI GGATG 1 cut(s) 358
FspAI RTGCGCAY 1 cut(s) 103
FspBI CTAG 1 cut(s) 384
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 209
HapII CCGG 3 cut(s) 129, 152, 206
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 5 cut(s) 79, 102, 341, 400, 439
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HpaII CCGG 3 cut(s) 129, 152, 206
HphI GGTGA 3 cut(s) 55, 151, 166
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 2 cut(s) 63, 91
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 362
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 5 cut(s) 79, 102, 341, 400, 439
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 2 cut(s) 63, 156
Kzo9I GATC 3 cut(s) 48, 63, 156
LpnPI CCDG 6 cut(s) 142, 165, 210, 219, 312, 323
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 194
MalI GATC 3 cut(s) 50, 65, 158
MboI GATC 3 cut(s) 48, 63, 156
MboII GAAGA 2 cut(s) 413, 434
MhlI GDGCHC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 114, 170
MseI TTAA 1 cut(s) 454
MslI CAYNNNNRTG 2 cut(s) 109, 434
MspI CCGG 3 cut(s) 129, 152, 206
MwoI GCNNNNNNNGC 2 cut(s) 273, 362
NcoI CCATGG 1 cut(s) 75
NdeII GATC 3 cut(s) 48, 63, 156
NlaIII CATG 5 cut(s) 79, 102, 341, 400, 439
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 276
NsbI TGCGCA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 3 cut(s) 133, 197, 256
RsaNI GTAC 3 cut(s) 132, 196, 255
RseI CAYNNNNRTG 2 cut(s) 109, 434
SaqAI TTAA 1 cut(s) 454
Sau3AI GATC 3 cut(s) 48, 63, 156
Sau96I GGNCC 1 cut(s) 287
SduI GDGCHC 1 cut(s) 346
SetI ASST 6 cut(s) 22, 127, 197, 371, 381, 389
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 109, 434
SsiI CCGC 5 cut(s) 170, 200, 248, 267, 411
SspMI CTAG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 254
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 287
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.