RLG00000006106

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016083
Physical Location & Seq
Reverse (-)
4403987 .. 4404427
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006106

Sequence Viewer

Length: 441 bp
ATGTCTCCAAAGACAAAACCTTTCCTCTCGGTGATGATCTCTATCATTCTGATCAACTTTCCCATGGCAACAATGTCCGACAATCCATGCGCATACCCGTGTTATCCTCCACCTACCGGTACTACTACTACTCCAACTCCGGTGACCACCACACCGCCTCAGCCTACCACATCGACAACGTACCCGCCTCCGGCCTACCCTACGCCGACTGGATATTACCCTTACAACCCTCCGCCGAGTACATATAACGGCGGTGGCGGCTATGGCTACGGTCCCCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCATGGAGACGCCTCATCAGCAACCTCATCCCACCTCACTAGGTCAAGGCTCATGGCAATCGCCACCGCCACCAATCTTCTTGTCATACTCATGTTTCCTCTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.67

Weight (kDa)

8.53

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 91
AciI CCGC 6 cut(s) 155, 185, 233, 252, 258, 396
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 121, 182, 241
AfiI CCNNNNNNNGG 2 cut(s) 116, 190
AgeI ACCGGT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 9, 330
AoxI GGCC 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 116
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 43, 154
AvaII GGWCC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 265
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 9, 330
BfaI CTAG 1 cut(s) 369
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 2 cut(s) 116, 139
BsaXI ACNNNNNCTCC 4 cut(s) 115, 121, 145, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 190
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 356
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 116, 190
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 270
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 3 cut(s) 117, 140, 191
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 116, 190
BsmAI GTCTC 2 cut(s) 9, 330
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 36, 51
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 6 cut(s) 155, 185, 233, 252, 258, 396
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 36, 51
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 39, 54
BstMAI GTCTC 2 cut(s) 9, 330
BstMBI GATC 2 cut(s) 36, 51
BstMWI GCNNNNNNNGC 3 cut(s) 258, 264, 347
BstPI GGTNACC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 356
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 120, 181, 240
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 6 cut(s) 64, 87, 323, 332, 382, 421
CviJI RGCY 5 cut(s) 163, 194, 261, 267, 379
CviKI_1 RGCY 5 cut(s) 163, 194, 261, 267, 379
CviQI GTAC 3 cut(s) 120, 181, 240
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 38, 53
DpnII GATC 2 cut(s) 36, 51
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 272
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 6 cut(s) 67, 90, 326, 335, 385, 424
FaqI GGGAC 1 cut(s) 258
FatI CATG 6 cut(s) 63, 86, 322, 331, 381, 420
FauI CCCGC 1 cut(s) 192
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 259
FspAI RTGCGCAY 1 cut(s) 91
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 91
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 117, 140, 191
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 6 cut(s) 67, 90, 326, 335, 385, 424
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 3 cut(s) 117, 140, 191
HphI GGTGA 2 cut(s) 43, 154
Hpy188I TCNGA 2 cut(s) 51, 79
Hpy188III TCNNGA 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 264, 347
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 6 cut(s) 67, 90, 326, 335, 385, 424
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 36, 51
LpnPI CCDG 6 cut(s) 130, 153, 195, 204, 297, 308
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 38, 53
MboI GATC 2 cut(s) 36, 51
MboII GAAGA 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 102, 158
MseI TTAA 1 cut(s) 439
MslI CAYNNNNRTG 2 cut(s) 97, 419
MspI CCGG 3 cut(s) 117, 140, 191
MwoI GCNNNNNNNGC 3 cut(s) 258, 264, 347
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 36, 51
NlaIII CATG 6 cut(s) 67, 90, 326, 335, 385, 424
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 142
NsbI TGCGCA 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 3 cut(s) 121, 182, 241
RsaNI GTAC 3 cut(s) 120, 181, 240
RseI CAYNNNNRTG 2 cut(s) 97, 419
SaqAI TTAA 1 cut(s) 439
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 36, 51
Sau96I GGNCC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 331
SetI ASST 6 cut(s) 22, 115, 182, 356, 366, 374
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 97, 419
SsiI CCGC 6 cut(s) 155, 185, 233, 252, 258, 396
SspMI CTAG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 173
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TseFI GTSAC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 272
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.