RchiOBHm_Chr4g0441281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016083
Physical Location & Seq
Forward (+)
63157657 .. 63158648
992 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40913

Sequence Viewer

Length: 453 bp
ATGTCTCCAAAGACAAAACCTTTTCTCCCAACCCTCCTCTTGGTGATGATCTCTATCATTCTGATCAACTTTCCCATGGCAACAATGTCCGACAATCCATGCGCATACCCGTGTTATCCTCCACCTACCGGTACTACTACTACTCCAACTCCGGTGACCACCACGCCTCCTCAGCCTACCACACCGACAACGTACCCGCCTCCGGCCTACCCTACGCCGACTGGATATTACCCTTACAACCCTCCGCCGAGTACATATAACGGCGGTGGCGGCTACGGCTACGGTCCCCCTCCTCCTGACCCTATCCTGCCTTATTTTCCTTTCTACTACAAACATGGTGCTCTTGGAGACGCCTCATCAGCAACCTCATGCCACCTCACTAGGTCAACGCTCATGGCAATAGCCACCGCCACCAATCTTCTTGTCATACTCATGTTTCTTCTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.08

Weight (kDa)

7.68

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
AciI CCGC 5 cut(s) 197, 245, 264, 270, 408
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 133, 194, 253
AfiI CCNNNNNNNGG 3 cut(s) 40, 128, 202
AgeI ACCGGT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 9, 342
AoxI GGCC 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 55, 166
AvaII GGWCC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 343
BbvCI CCTCAGC 1 cut(s) 171
BceAI ACGGC 2 cut(s) 277, 292
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 9, 342
BfaI CTAG 1 cut(s) 381
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 128, 151
BsaXI ACNNNNNCTCC 8 cut(s) 9, 39, 127, 133, 151, 157, 163, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 128, 202
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 40, 128, 202
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 3 cut(s) 26, 159, 282
BshFI GGCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 343
BsiSI CCGG 3 cut(s) 129, 152, 203
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 3 cut(s) 40, 128, 202
BsmAI GTCTC 2 cut(s) 9, 342
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 48, 63
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 5 cut(s) 197, 245, 264, 270, 408
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 48, 63
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 154
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 51, 66
BstMAI GTCTC 2 cut(s) 9, 342
BstMBI GATC 2 cut(s) 48, 63
BstMWI GCNNNNNNNGC 4 cut(s) 172, 270, 276, 359
BstPI GGTNACC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 75
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 359
Csp6I GTAC 3 cut(s) 132, 193, 252
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 6 cut(s) 76, 99, 335, 369, 394, 433
CviJI RGCY 5 cut(s) 175, 206, 273, 279, 404
CviKI_1 RGCY 5 cut(s) 175, 206, 273, 279, 404
CviQI GTAC 3 cut(s) 132, 193, 252
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 50, 65
DpnII GATC 2 cut(s) 48, 63
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 6 cut(s) 79, 102, 338, 372, 397, 436
FaqI GGGAC 1 cut(s) 270
FatI CATG 6 cut(s) 75, 98, 334, 368, 393, 432
FauI CCCGC 1 cut(s) 204
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 271
FspAI RTGCGCAY 1 cut(s) 103
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 206
HapII CCGG 3 cut(s) 129, 152, 203
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 6 cut(s) 79, 102, 338, 372, 397, 436
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HpaII CCGG 3 cut(s) 129, 152, 203
HphI GGTGA 2 cut(s) 55, 166
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 2 cut(s) 63, 91
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 270, 276, 359
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 6 cut(s) 79, 102, 338, 372, 397, 436
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 2 cut(s) 48, 63
LpnPI CCDG 6 cut(s) 142, 165, 207, 216, 309, 320
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 50, 65
MboI GATC 2 cut(s) 48, 63
MboII GAAGA 2 cut(s) 410, 431
MhlI GDGCHC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 114, 170
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 2 cut(s) 109, 431
MspI CCGG 3 cut(s) 129, 152, 203
MwoI GCNNNNNNNGC 4 cut(s) 172, 270, 276, 359
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 48, 63
NlaIII CATG 6 cut(s) 79, 102, 338, 372, 397, 436
NlaIV GGNNCC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 1 cut(s) 272
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 3 cut(s) 133, 194, 253
RsaNI GTAC 3 cut(s) 132, 193, 252
RseI CAYNNNNRTG 2 cut(s) 109, 431
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 48, 63
Sau96I GGNCC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 343
SetI ASST 6 cut(s) 22, 127, 194, 368, 378, 386
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 109, 431
SsiI CCGC 5 cut(s) 197, 245, 264, 270, 408
SspMI CTAG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 194
TatI WGTACW 1 cut(s) 251
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 284
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.