AT1G70985

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016083
Physical Location & Seq
Reverse (-)
26764672 .. 26765285
614 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70985.1

Sequence Viewer

Length: 408 bp
ATGAATAAACGTTACGGTCACCTCATAAGTCTATTGTTCGTGTTTTCTCTTGTTATGTTCCCCTTCATAACAATATCACAGACGCCATGTCCGTACCCTTGTAACCCGTTGCCAATAGCCGGTACTGGCTCCACTCAACCGGCCGGTTATTATCCTCAACCGACCGGTTACTATCCTCCTCCATCGTCGAGTAATGTACCGAATTACCCTTCTCCACCTTATTACGGAGGTAATCCCAGCGGGGGATATAACGGTCCTCCACCGCCGGACCCTATCTTGCCTTATTTCCCGTTCTACTACAGAAAACCTCCTCATCAGACGGATCAGTCATCATCTTCCATGAAATCAACTGTCAAGATCGTAACAGTGGCAAATCTTCTTGCGGTACTTATGTTATTTTCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.85

Weight (kDa)

9.1

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23050 AT1G70985
fragaria_vesca FvH4_4g32420
prunus_persica Prupe.1G324600_v2.0.a1
pyrus_communis pycom13g02410 pycom16g02420
rosa_chinensis RchiOBHm_Chr4g0441281
rosa_laevigata RLG00000006106
rosa_roxburghii Rroxscaffold_5G00382160
rosa_rugosa Rorug04G0331900
rosa_samantha Rh4AG383900 Rh4BG397900 Rh4CG413100 Rh4DG390600
rosa_wichuraiana Rw4G033120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 325
AciI CCGC 3 cut(s) 240, 263, 383
AclI AACGTT 1 cut(s) 10
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 4 cut(s) 95, 124, 198, 387
AfiI CCNNNNNNNGG 3 cut(s) 119, 224, 242
AgeI ACCGGT 1 cut(s) 164
AhdI GACNNNNNGTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 330
AoxI GGCC 1 cut(s) 141
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 254, 268
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 2 cut(s) 254, 268
BaeI ACNNNNGTAYC 1 cut(s) 377
BccI CCATC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 298
Bme18I GGWCC 2 cut(s) 254, 268
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 254, 268
BmiI GGNNCC 2 cut(s) 130, 270
BsaHI GRCGYC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 224, 242
Bse118I RCCGGY 4 cut(s) 119, 139, 143, 164
Bse1I ACTGG 1 cut(s) 130
BseLI CCNNNNNNNGG 3 cut(s) 119, 224, 242
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 168, 300
BseX3I CGGCCG 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 236
Bsh1285I CGRYCG 2 cut(s) 144, 165
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 2 cut(s) 144, 165
BsiSI CCGG 5 cut(s) 120, 140, 144, 165, 266
BslI CCNNNNNNNGG 3 cut(s) 119, 224, 242
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 322, 357
BspACI CCGC 3 cut(s) 240, 263, 383
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 130, 270
BspPI GGATC 1 cut(s) 330
BsrFI RCCGGY 4 cut(s) 119, 139, 143, 164
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 4 cut(s) 119, 139, 143, 164
BssMI GATC 2 cut(s) 322, 357
BssNI GRCGYC 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 17, 254, 352, 367
BstACI GRCGYC 1 cut(s) 83
BstEII GGTNACC 1 cut(s) 17
BstKTI GATC 2 cut(s) 325, 360
BstMBI GATC 2 cut(s) 322, 357
BstMCI CGRYCG 2 cut(s) 144, 165
BstPI GGTNACC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 372
Cfr10I RCCGGY 4 cut(s) 119, 139, 143, 164
Cfr13I GGNCC 2 cut(s) 254, 268
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 94, 123, 197, 386
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 2 cut(s) 87, 340
CviJI RGCY 3 cut(s) 119, 129, 143
CviKI_1 RGCY 3 cut(s) 119, 129, 143
CviQI GTAC 4 cut(s) 94, 123, 197, 386
DpnI GATC 2 cut(s) 324, 359
DpnII GATC 2 cut(s) 322, 357
DrdI GACNNNNNNGTC 1 cut(s) 325
DriI GACNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
Eam1105I GACNNNNNGTC 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 254, 268
Eco52I CGGCCG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
FaeI CATG 2 cut(s) 90, 343
FaiI YATR 7 cut(s) 26, 56, 68, 88, 249, 341, 392
FatI CATG 2 cut(s) 86, 339
FauI CCCGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 143
HapII CCGG 5 cut(s) 120, 140, 144, 165, 266
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 90, 343
HpaII CCGG 5 cut(s) 120, 140, 144, 165, 266
HphI GGTGA 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 355
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 73, 219
HpyCH4III ACNGT 4 cut(s) 17, 254, 352, 367
HpyCH4IV ACGT 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 90, 343
Kzo9I GATC 2 cut(s) 322, 357
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 111, 133, 153, 157, 178, 250, 279
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 5 cut(s) 11, 17, 101, 167, 361
MalI GATC 2 cut(s) 324, 359
MboI GATC 2 cut(s) 322, 357
MboII GAAGA 2 cut(s) 327, 368
MluCI AATT 1 cut(s) 202
MnlI CCTC 8 cut(s) 32, 165, 186, 189, 221, 267, 318, 321
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 5 cut(s) 120, 140, 144, 165, 266
NdeII GATC 2 cut(s) 322, 357
NlaIII CATG 2 cut(s) 90, 343
NlaIV GGNNCC 2 cut(s) 130, 270
NmuCI GTSAC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 164
Psp1406I AACGTT 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 130, 270
PspPI GGNCC 2 cut(s) 254, 268
RsaI GTAC 4 cut(s) 95, 124, 198, 387
RsaNI GTAC 4 cut(s) 94, 123, 197, 386
Sau3AI GATC 2 cut(s) 322, 357
Sau96I GGNCC 2 cut(s) 254, 268
SetI ASST 5 cut(s) 13, 24, 220, 232, 310
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 2 cut(s) 254, 268
Sse9I AATT 1 cut(s) 202
SsiI CCGC 3 cut(s) 240, 263, 383
TaaI ACNGT 4 cut(s) 17, 254, 352, 367
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 202
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 3 cut(s) 17, 55, 356
TspGWI ACGGA 3 cut(s) 81, 240, 335
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 254, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.