Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Forward (+)

8329924 .. 8331104

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23465.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACGTCGCCGTCATCGTCTTTCTGGAACACAGCTTCACGAGAAGCCATGAAAAGCGGCATGTTTGTCGCGAAAGTCTACTGCTTTCTTCATGTAACAACAAACTATCTCGGATTCATGGCTTATGCTTATGGTCCGAGCATGATTCCGACGCTTCATCCTTCGGGAAATATGTTATTAGCTGAGAGAATCTCGAAGCGGTATCAGAAACCGAGTCGTGGAGATATAGTTGTGATACGATCTCCAGAGAACCCTAATAAGACTCCGATTAAGAGAGTTGTTGGTGTTGAAGGTGATTGTATAAGCTTTGTGATTGATCCAGTGAAGAGTGATGAATCTCAAACCATTGTGGTTCCTAAAGGACATGTCTTTGTTCAAGGTGACTATACTCATAACTCGAGAGACTCAAGAAACTTTGGTCCTGTACCTTATGGTCTTATTCAAGGCAGAGTGCTATGGAGGGTTTGGCCATTTCAAGATTTTGGACCACTTGGACCAACCCCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

169

Amino Acids

18.86

Weight (kDa)

9.48

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	27 - 106	1.9e-14	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	113 - 156	2.8e-09	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	57, 199
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	290, 377, 443, 476
AluBI	AGCT	3 cut(s)	35, 182, 306
AluI	AGCT	3 cut(s)	35, 182, 306
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	467
AspS9I	GGNCC	4 cut(s)	134, 419, 485, 494
AsuHPI	GGTGA	2 cut(s)	305, 392
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	4 cut(s)	134, 419, 485, 494
BalI	TGGCCA	1 cut(s)	469
BauI	CACGAG	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcoDI	GTCTC	1 cut(s)	396
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme18I	GGWCC	4 cut(s)	134, 419, 485, 494
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	4 cut(s)	134, 419, 485, 494
BmiI	GGNNCC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	239, 316
Bsp68I	TCGCGA	1 cut(s)	71
BspACI	CCGC	2 cut(s)	57, 199
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	239, 316
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	183, 507
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	242, 319
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	239, 316
BstNSI	RCATGY	2 cut(s)	64, 368
BstUI	CGCG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	327
BtuMI	TCGCGA	1 cut(s)	71
Cfr13I	GGNCC	4 cut(s)	134, 419, 485, 494
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	6 cut(s)	49, 61, 92, 118, 142, 365
CviJI	RGCY	6 cut(s)	35, 47, 122, 182, 306, 469
CviKI_1	RGCY	6 cut(s)	35, 47, 122, 182, 306, 469
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	183, 507
DpnI	GATC	2 cut(s)	241, 318
DpnII	GATC	2 cut(s)	239, 316
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco47I	GGWCC	4 cut(s)	134, 419, 485, 494
Eco88I	CYCGRG	1 cut(s)	397
FaeI	CATG	6 cut(s)	52, 64, 95, 121, 145, 368
FatI	CATG	6 cut(s)	48, 60, 91, 117, 141, 364
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	469
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	52, 64, 95, 121, 145, 368
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	7 cut(s)	114, 145, 189, 214, 262, 335, 404
HphI	GGTGA	2 cut(s)	305, 392
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	5 cut(s)	113, 138, 150, 207, 267
Hpy188III	TCNNGA	9 cut(s)	25, 39, 70, 165, 193, 245, 399, 408, 476
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	10, 154
HpyAV	CCTTC	2 cut(s)	171, 284
HpyCH4IV	ACGT	1 cut(s)	5
HpyF3I	CTNAG	2 cut(s)	183, 507
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	52, 64, 95, 121, 145, 368
Kzo9I	GATC	2 cut(s)	239, 316
LpnPI	CCDG	4 cut(s)	10, 258, 333, 435
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	94, 380
MalI	GATC	2 cut(s)	241, 318
MboI	GATC	2 cut(s)	239, 316
MboII	GAAGA	2 cut(s)	80, 337
MlsI	TGGCCA	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	3 cut(s)	223, 256, 398
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	1 cut(s)	453
Mox20I	TGGCCA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	469
MvnI	CGCG	1 cut(s)	71
NdeII	GATC	2 cut(s)	239, 316
NlaIII	CATG	6 cut(s)	52, 64, 95, 121, 145, 368
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	380
NruI	TCGCGA	1 cut(s)	71
NspI	RCATGY	2 cut(s)	64, 368
PaeR7I	CTCGAG	1 cut(s)	397
PciI	ACATGT	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	114, 145, 189, 335
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	3 cut(s)	222, 256, 398
PpsI	GAGTC	3 cut(s)	222, 256, 398
PscI	ACATGT	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	4 cut(s)	134, 419, 485, 494
RruI	TCGCGA	1 cut(s)	71
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	2 cut(s)	239, 316
Sau96I	GGNCC	4 cut(s)	134, 419, 485, 494
SchI	GAGTC	3 cut(s)	223, 256, 398
SetI	ASST	7 cut(s)	8, 37, 184, 295, 308, 382, 430
Sfr274I	CTCGAG	1 cut(s)	397
SinI	GGWCC	4 cut(s)	134, 419, 485, 494
SlaI	CTCGAG	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	397, 406
SmoI	CTYRAG	2 cut(s)	397, 406
SsiI	CCGC	2 cut(s)	57, 199
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	194, 398
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	114, 145, 189, 335
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	5 cut(s)	65, 80, 106, 146, 348
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	4 cut(s)	134, 419, 485, 494
XceI	RCATGY	2 cut(s)	64, 368
XhoI	CTCGAG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.