Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Reverse (-)

535941 .. 536780

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGTCCATTCTTCTGCCTCCTCGCAATCCTCGCCGTCCTCCTTCCTCTAGCGGCCGCCGCACGCGGTGGGCTGGCCGGAGGATGGAAGCCGATTAAGGACATCAACGACCCCCACGTGAAGGAGATTGCGGAGTTCGCGGTGTCGGAGTACAACAAGAAATCTGGGAAGAAGCTGGAGTTTCAGAGCGTGGTGAAGGGCGAGACTCAGGTCGTCGCCGGCGAGAACTACCGGCTCGTCATCGCCGTCAAGGATAACTCGGCGGCGGCCAAGTACGAGTGCGTCGTGTATGAGAAGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATCAAGTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

115

Amino Acids

12.81

Weight (kDa)

8.87

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	27 - 90	4.4e-16	Cystatin domain
SQAPI	PF16845	32 - 113	6.4e-35	Aspartic acid proteinase inhibitor
PP1	PF07430	39 - 100	8.5e-06	Phloem filament protein PP1 cystatin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	66, 140
AciI	CCGC	8 cut(s)	53, 57, 60, 66, 131, 140, 263, 266
AcoI	YGGCCR	3 cut(s)	54, 75, 267
AcvI	CACGTG	1 cut(s)	118
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	152, 275
AfiI	CCNNNNNNNGG	2 cut(s)	84, 121
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	54, 75, 267
AsuHPI	GGTGA	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	118
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	2 cut(s)	20, 230
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	50, 312
BisI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
BlsI	GCNGC	5 cut(s)	55, 58, 61, 265, 268
BoxI	GACNNNNGTC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 121
Bse118I	RCCGGY	2 cut(s)	218, 231
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	84, 121
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	2 cut(s)	66, 140
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	56, 77, 269
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	78, 219, 232
BslI	CCNNNNNNNGG	2 cut(s)	84, 121
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	56, 77, 269
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	8 cut(s)	53, 57, 60, 66, 131, 140, 263, 266
BspANI	GGCC	3 cut(s)	56, 77, 269
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	66, 140
BsrFI	RCCGGY	2 cut(s)	218, 231
BssAI	RCCGGY	2 cut(s)	218, 231
BssMI	GATC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	3 cut(s)	64, 75, 220
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	66, 140
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
BstPAI	GACNNNNGTC	1 cut(s)	209
BstUI	CGCG	2 cut(s)	66, 140
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	56, 77, 269
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	64, 75, 220
CciNI	GCGGCCGC	1 cut(s)	54
Cfr10I	RCCGGY	2 cut(s)	218, 231
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	151, 274
CviJI	RGCY	7 cut(s)	56, 73, 77, 91, 175, 235, 269
CviKI_1	RGCY	7 cut(s)	56, 73, 77, 91, 175, 235, 269
CviQI	GTAC	2 cut(s)	151, 274
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	54, 75, 267
EagI	CGGCCG	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	118
FaiI	YATR	2 cut(s)	291, 309
Fnu4HI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
FspBI	CTAG	2 cut(s)	50, 312
GluI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	56, 77, 269
HapII	CCGG	3 cut(s)	78, 219, 232
HgaI	GACGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	3 cut(s)	78, 219, 232
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	148, 186
Hpy188III	TCNNGA	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	218, 287
HpyAV	CCTTC	4 cut(s)	53, 115, 190, 337
HpyCH4IV	ACGT	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	117
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	59, 91, 150, 161, 194, 232, 245
MaeI	CTAG	2 cut(s)	50, 312
MaeII	ACGT	1 cut(s)	117
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	4, 181, 307
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	29, 32, 41, 50, 57, 74
MreI	CGCCGGCG	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	96
MspI	CCGG	3 cut(s)	78, 219, 232
MvnI	CGCG	2 cut(s)	66, 140
MwoI	GCNNNNNNNGC	3 cut(s)	32, 59, 137
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	331
NgoMIV	GCCGGC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	239
NotI	GCGGCCGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	4 cut(s)	114, 219, 243, 282
PdiI	GCCGGC	1 cut(s)	220
PkrI	GCNGC	5 cut(s)	55, 58, 61, 265, 268
PleI	GAGTC	1 cut(s)	199
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	152, 275
RsaNI	GTAC	2 cut(s)	151, 274
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	5 cut(s)	54, 57, 60, 264, 267
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	199
SetI	ASST	3 cut(s)	120, 177, 213
SgrAI	CRCCGGYG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	8 cut(s)	53, 57, 60, 66, 131, 140, 263, 266
SspMI	CTAG	2 cut(s)	50, 312
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	5 cut(s)	56, 59, 62, 266, 269
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
XspI	CTAG	2 cut(s)	50, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.