Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Reverse (-)

85048279 .. 85050863

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGCTGAGATACCTCAACAGTTTCATTTCATCGGAGGCATTCAAAAACGCCGGCAGAGAACTAACCGACGGCGTTCCGCGCCTGGTCAAGTTCCTCTGTTGCCTCCAACTCACCAAGACTCACCTCCTCACCGTCGTTCTGACGTACGGTCCAAGCATGCTCCCGACGCTCGGCCTGACCGGAAATCTGTGCTTGGCCGAACGCATCTCCACCCGGTTTGAAAAATTGGGCGTTGGTGATGTTGTTCTGCTACGATCGCCTGACGTTCCTAAGAAGATTGTGACCAAGCGATTGGTGGCCGTGGAGGGTCAGTCTGTTACTTACATTGTTGACCCTAAGAACAGTGATAGGTCTGAGACTCTTGTGGTTCCGAAGGGGCATGTTTGGGTGGAGGGAGATAATATCTATGAGTCGAATGATTCGAGAAAGTTTGGGCCTGTTCCTTATGGTCTTCTACAAGGCAGAGTCTTTTGGAGGATTTGGCCACCTAAAGATTTTGGATCATTGGTGCAAAGCAAAGGGAAGGATTCTGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

180

Amino Acids

19.98

Weight (kDa)

9.43

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	30 - 109	5.9e-08	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	121 - 162	1.3e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	3 cut(s)	198, 300, 485
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	46, 224
AhdI	GACNNNNNGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	5 cut(s)	175, 198, 300, 437, 485
AspLEI	GCGC	2 cut(s)	7, 84
AspS9I	GGNCC	2 cut(s)	152, 437
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	4 cut(s)	106, 116, 124, 251
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	446
BceAI	ACGGC	2 cut(s)	88, 287
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	86, 217
Bme18I	GGWCC	1 cut(s)	152
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	152, 437
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	86, 217
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	5 cut(s)	177, 200, 302, 439, 487
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	54, 183, 217
BsiWI	CGTACG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	5 cut(s)	177, 200, 302, 439, 487
Bsp143I	GATC	2 cut(s)	257, 503
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	5 cut(s)	177, 200, 302, 439, 487
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	257, 503
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	4 cut(s)	23, 136, 152, 347
BstC8I	GCNNGC	2 cut(s)	55, 161
BstDEI	CTNAG	4 cut(s)	8, 273, 339, 357
BstDSI	CCRYGG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 84
BstKTI	GATC	2 cut(s)	260, 506
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	257, 503
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 169, 259
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	163, 386
BstSCI	CCNGG	2 cut(s)	84, 215
BstUI	CGCG	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	446
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	5 cut(s)	177, 200, 302, 439, 487
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	55, 161
CciI	TCATGA	1 cut(s)	539
CfoI	GCGC	2 cut(s)	7, 84
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	152, 437
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	3 cut(s)	160, 383, 540
CviJI	RGCY	5 cut(s)	177, 200, 302, 439, 487
CviKI_1	RGCY	5 cut(s)	177, 200, 302, 439, 487
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	8, 273, 339, 357
DpnI	GATC	2 cut(s)	259, 505
DpnII	GATC	2 cut(s)	257, 503
DriI	GACNNNNNGTC	1 cut(s)	150
EaeI	YGGCCR	3 cut(s)	198, 300, 485
Eam1105I	GACNNNNNGTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	163, 386, 543
FaiI	YATR	5 cut(s)	161, 384, 411, 450, 541
FatI	CATG	3 cut(s)	159, 382, 539
GlaI	GCGC	2 cut(s)	6, 83
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	177, 200, 302, 439, 487
HapII	CCGG	3 cut(s)	54, 183, 217
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	7, 84
Hin1II	CATG	3 cut(s)	163, 386, 543
Hin6I	GCGC	2 cut(s)	5, 82
HinP1I	GCGC	2 cut(s)	5, 82
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	6 cut(s)	121, 361, 413, 422, 468, 530
HpaII	CCGG	3 cut(s)	54, 183, 217
HphI	GGTGA	4 cut(s)	106, 116, 124, 251
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	37, 144, 358, 375
Hpy188III	TCNNGA	3 cut(s)	166, 426, 540
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	74, 140, 172
HpyAV	CCTTC	2 cut(s)	370, 520
HpyCH4III	ACNGT	4 cut(s)	23, 136, 152, 347
HpyCH4IV	ACGT	2 cut(s)	146, 267
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 169, 259
HpyF3I	CTNAG	4 cut(s)	8, 273, 339, 357
HpySE526I	ACGT	2 cut(s)	146, 267
Hsp92II	CATG	3 cut(s)	163, 386, 543
HspAI	GCGC	2 cut(s)	5, 82
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	257, 503
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	8 cut(s)	67, 71, 98, 191, 196, 230, 276, 453
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	2 cut(s)	146, 267
MaeIII	GTNAC	2 cut(s)	283, 319
MalI	GATC	2 cut(s)	259, 505
MboI	GATC	2 cut(s)	257, 503
MboII	GAAGA	2 cut(s)	289, 446
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	4 cut(s)	115, 355, 422, 477
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	9 cut(s)	26, 31, 107, 116, 137, 140, 301, 388, 471
Mox20I	TGGCCA	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	487
Msp20I	TGGCCA	1 cut(s)	487
MspI	CCGG	3 cut(s)	54, 183, 217
MspR9I	CCNGG	2 cut(s)	86, 217
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	81, 169, 259
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	257, 503
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	163, 386, 543
NlaIV	GGNNCC	1 cut(s)	372
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	163, 386
PaeI	GCATGC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	422, 530
Pfl23II	CGTACG	1 cut(s)	147
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	4 cut(s)	115, 355, 421, 476
PpsI	GAGTC	4 cut(s)	115, 355, 421, 476
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	152, 437
PvuI	CGATCG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	257, 503
Sau96I	GGNCC	2 cut(s)	152, 437
SchI	GAGTC	4 cut(s)	115, 355, 422, 477
ScrFI	CCNGG	2 cut(s)	86, 217
SetI	ASST	6 cut(s)	18, 129, 149, 270, 356, 493
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	152
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	84, 215
TaaI	ACNGT	4 cut(s)	23, 136, 152, 347
TaiI	ACGT	2 cut(s)	149, 270
TaqI	TCGA	2 cut(s)	416, 425
TasI	AATT	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	422, 530
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	16, 21
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	2 cut(s)	163, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.