Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Reverse (-)

3470714 .. 3473330

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05970.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGCTGAGATACCTCACCAATTTCATAGCATCGGAGGCCTTCAAAACCGCCGGCAGAGAACTACGCGACGGCGTTCCTCGCCTGGTTAAGTTCGTCTGCTGCCTCAAACTCACCAACACCTACCTCTTCACCGTCGTTCTGACTTACGGCCCAAGCATGCTCCCGACGTTCGGCCTCGCCGGAAACTTGTCCTTGGCGGAACGCGTCTCGACCCGGTTCGAGAAATTGGGGGTGGGTGATATTGTTCTGCTACGATCGCCTGAGGTTCCGAAGAAGATTGTGACGAAGCGATTGGTGGCCATGGAGGGTCAGTCTGTTAGTTACATTGTTGACCCTAAGAACAGTGATAGGGTTGAGACTGTTGTGGTTCCGAAAGGGCATGTTTGGGTGCAGGGAGATAATATCTATGATTCGAATGATTCGAGGAAGTTTGGGCCTGTTCCTTATGGTCTTTTACAAGGCAGAGTCTTTTGGAGGTTTTGGCCACCTAAAGATTTTGGATCATTGGCGCAAAGCAAAGGGAAGGCTCCTGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

9.79

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	29 - 109	3.7e-08	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	121 - 162	2.5e-09	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	69, 207
AciI	CCGC	2 cut(s)	51, 200
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	2 cut(s)	300, 485
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	214, 353
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	6 cut(s)	39, 151, 175, 300, 437, 485
ApeKI	GCWGC	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	7, 514
AspS9I	GGNCC	2 cut(s)	152, 437
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	4 cut(s)	10, 106, 124, 251
AsuII	TTCGAA	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	2 cut(s)	302, 487
BbvI	GCAGC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	88, 166
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	214, 353
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	86, 217
BmgT120I	GGNCC	2 cut(s)	152, 437
BmiI	GGNNCC	3 cut(s)	270, 372, 531
BmrFI	CCNGG	2 cut(s)	86, 217
BmsI	GCATC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	195, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	195, 303
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	2 cut(s)	69, 207
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	6 cut(s)	41, 153, 177, 302, 439, 487
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	54, 183, 217
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	214, 353
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	6 cut(s)	41, 153, 177, 302, 439, 487
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	257, 503
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	51, 200
BspANI	GGCC	6 cut(s)	41, 153, 177, 302, 439, 487
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	69, 207
BspHI	TCATGA	1 cut(s)	539
BspLI	GGNNCC	3 cut(s)	270, 372, 531
BspPI	GGATC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	195, 303
BssMI	GATC	2 cut(s)	257, 503
BssT1I	CCWWGG	2 cut(s)	195, 303
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	136, 347, 364
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	55, 161
BstDEI	CTNAG	3 cut(s)	8, 264, 339
BstDSI	CCRYGG	1 cut(s)	303
BstFNI	CGCG	2 cut(s)	69, 207
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 514
BstKTI	GATC	2 cut(s)	260, 506
BstMAI	GTCTC	2 cut(s)	214, 353
BstMBI	GATC	2 cut(s)	257, 503
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 81, 259
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	163, 386
BstSCI	CCNGG	2 cut(s)	84, 215
BstUI	CGCG	2 cut(s)	69, 207
BstV1I	GCAGC	1 cut(s)	89
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	6 cut(s)	41, 153, 177, 302, 439, 487
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	55, 161
CciI	TCATGA	1 cut(s)	539
CfoI	GCGC	2 cut(s)	7, 514
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	152, 437
CseI	GACGC	1 cut(s)	196
CviAII	CATG	4 cut(s)	160, 304, 383, 540
CviJI	RGCY	7 cut(s)	41, 153, 177, 302, 439, 487, 530
CviKI_1	RGCY	7 cut(s)	41, 153, 177, 302, 439, 487, 530
DdeI	CTNAG	3 cut(s)	8, 264, 339
DpnI	GATC	2 cut(s)	259, 505
DpnII	GATC	2 cut(s)	257, 503
EaeI	YGGCCR	2 cut(s)	300, 485
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	195, 303
Eco147I	AGGCCT	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	2 cut(s)	195, 303
ErhI	CCWWGG	2 cut(s)	195, 303
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	4 cut(s)	163, 307, 386, 543
FaiI	YATR	7 cut(s)	29, 161, 305, 384, 411, 450, 541
FatI	CATG	4 cut(s)	159, 303, 382, 539
Fnu4HI	GCNGC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	103
GlaI	GCGC	2 cut(s)	6, 513
GluI	GCNGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	6 cut(s)	41, 153, 177, 302, 439, 487
HapII	CCGG	3 cut(s)	54, 183, 217
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	7, 514
Hin1II	CATG	4 cut(s)	163, 307, 386, 543
Hin6I	GCGC	2 cut(s)	5, 512
HinP1I	GCGC	2 cut(s)	5, 512
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	413, 422, 468
HpaII	CCGG	3 cut(s)	54, 183, 217
HphI	GGTGA	4 cut(s)	10, 106, 124, 251
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	37, 144, 273, 375
Hpy188III	TCNNGA	4 cut(s)	166, 211, 223, 540
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	74, 140, 172
HpyAV	CCTTC	2 cut(s)	52, 520
HpyCH4III	ACNGT	3 cut(s)	136, 347, 364
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 81, 259
HpyF3I	CTNAG	3 cut(s)	8, 264, 339
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	4 cut(s)	163, 307, 386, 543
HspAI	GCGC	2 cut(s)	5, 512
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	257, 503
LmnI	GCTCC	2 cut(s)	168, 535
LpnPI	CCDG	8 cut(s)	67, 71, 98, 196, 230, 276, 380, 453
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	283, 323
MalI	GATC	2 cut(s)	259, 505
MboI	GATC	2 cut(s)	257, 503
MboII	GAAGA	3 cut(s)	121, 286, 289
MlsI	TGGCCA	2 cut(s)	302, 487
MluCI	AATT	2 cut(s)	22, 227
MluI	ACGCGT	1 cut(s)	205
MluNI	TGGCCA	2 cut(s)	302, 487
MlyI	GAGTC	1 cut(s)	477
Mox20I	TGGCCA	2 cut(s)	302, 487
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	2 cut(s)	302, 487
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	2 cut(s)	302, 487
MspI	CCGG	3 cut(s)	54, 183, 217
MspR9I	CCNGG	2 cut(s)	86, 217
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	69, 207
MwoI	GCNNNNNNNGC	3 cut(s)	38, 81, 259
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	257, 503
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	163, 307, 386, 543
NlaIV	GGNNCC	3 cut(s)	270, 372, 531
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	163, 386
NspV	TTCGAA	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	539
PceI	AGGCCT	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	413, 422
PkrI	GCNGC	1 cut(s)	104
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	270, 372, 531
PspPI	GGNCC	2 cut(s)	152, 437
PvuI	CGATCG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	2 cut(s)	257, 503
Sau96I	GGNCC	2 cut(s)	152, 437
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	86, 217
SetI	ASST	7 cut(s)	18, 125, 129, 173, 270, 482, 493
SfaNI	GCATC	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	416
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	22, 227
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	2 cut(s)	51, 200
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	84, 215
StyI	CCWWGG	2 cut(s)	195, 303
TaaI	ACNGT	3 cut(s)	136, 347, 364
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	4 cut(s)	212, 222, 416, 425
TasI	AATT	2 cut(s)	22, 227
TfiI	GAWTC	2 cut(s)	413, 422
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	352
XceI	RCATGY	2 cut(s)	163, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.