Rorug05G0009800

Mitochondrial inner membrane protease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006032
Physical Location & Seq
Forward (+)
572939 .. 575806
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0009800.1

Sequence Viewer

Length: 2529 bp
ATGTCGTTAATAGTGGAGGCTATGGTCCAGACTTTGACGGAGCAAGTGTTCACAGCTCTAATGAACCAGGCTGAATTTGCACTCGACTTCAGCGGCCAGTTTGAGCAGTTGAAGACGGGGCTTGATCTCACCAAGGCCTTACTGTCAGACACGGAGAGTCTCAACCACAAGAACAACACTATCAAGACAGCATTATTTGATCTAAGGGAAGTCATCTACAAAGCCGACGATGTACTCACTGATTGCTTGGTTAGAGATGAATACAGAAAGGAGGGATCCTGTTCCGGCTCCTTGCTTCACGATCCATTCTTCTTGCATCGTACAGGAAAGAAATTGAAAGACATCAATTTGCGTATGAAGGAGATAGAGAAGACCTTGGGCCGGTTTTTGAGGGCACCGGACAGCATCCATAGAGAAGATGCATACCAAGTTAGGGTGATGGTGTCACAGGACTGGAATCCAACTGAGATAATTGGGTTGGATAACGATGTGGAGAAGATTAAGGGTTGGATTTTTGACACCAGCAAGGTACTTCACCATGTAGGCATTGTGGGAATGGGTGGCTTGGGCAAAACCACCATTGCTCAGAAGATATTTCATGATCTAGAAGTAGTCGGCCACTTTCACAAGCTGATATGGGTGTGTGTTTCGCAATCATTCAGCGCTGAGCGGATTATGAGGAGCATCCTAGAAGGTCTAGGAGAAAATGTCTCCGGAGCCGGTGTTACTCAGATTTTGAGCAGAATTCAGCAAGTACTTAAAGATAAGAGCTGTCTGATTGTCATGGATGATGTGTGGAATCACACAGATGTTGATTGGTGGACCAACCTCTGCTCTGTTATACCCAAACAAAGCAGCTGCATCATAGTTACAACTAGAAATGAAGAAGCTGCAATTGGTATGGGAGTTGAAAGCTCACGAATCCACCGTCCGAAGACTCTTAATGATGAGGAAAGCTGGTGTTTATTCTCCAAGTTTGCATTTCCTACAAGCAAGGGATTGTGCCCGGAGGACAGGCTTGAGAAATTAGGAAAAGAACTCTTGAAGAAGTGTGGTGGACTCCCACTCGCAATCAAGACTATAGGATCCTTGTTGGCATCAAAGATCGACTACCCTTCGCAATGGACACGAGTTCTGGAGAGCTTTCATTCTTTGACAACCGAGGGAAAAACTAGCTCACTAAGCTCTGTTATGGCCTGTTTGCGATTGAGCTATGATGAACTTCCGCCTGGTTTGAAGCAATGCCTGCTGTGTTTCTCCATCTATCCTGAAGACTATGAGATACATGCTGATCAGTTAATCTACTGGTGGATCGGAGAAGGCCTCGTGCAAAGCAAGGGCTCAAGAACAGCAGTAGAAGTTGGATATGAGTATCTCACAGTACTAATCAGCAGATGCTTGGTTGAAATTGTGCAGCGGAGAGGATTTGATGGGAGAGTCTACAAGTGCAAAATACATGATATGGTGCGGGAACTGATAATATTGATTGCAGAAGAGGAGGAATTTTGCGGCTTCGACGAACGAGGCAGACAAGAATTGACAGCAAAGACTAGGTGGCTGTGCTTTATTGATGAAATGGATGAAAAGTCCTTGAAACGTAGTTCAAAGCTTAGGGCATTGTTGCTGATGTCAAGCCGCGGATTTGACTTTGAAAGGAATTCGGGGTTTCTGCTGCGATCCCTCAGAATGTTGGATTTATCAAACTGCACTGTGGATGAGCATTGTGTGGAGGATCTCTTTAGCTGGATCAGCTCCCTTAAGCGCTTAGCATCTCTGAACTTAAGTGGTATTCAAGCCCTGAAAGAAGTGCCCTCTTCAATTCATAAACTCCTCAACCTCCAACTTTTGCTTTTAACAGGTTGCAGCAATCTAGTAAAAATACACCCTTCCATCACTAATTTGAAGAAGTTGATTATTTTGGACCTAGGCGGGTGTCCAATCCAATACTTGCCTCAGGGATTGGGAAGGCTTTCTTATCTTCAAGAGCTCTCCGGATTCAAGGTTGTGAGTCAGCCTAGAAAGCCAAGTTTCCGGCTTCTTGAGATTAGGGAATTGATCAACCTGAGAGTACTGCGAATACATGTAAGCAGTACCACAGTTATCGCAGACAATGAACTTGATGTCCTTTCTCAGCTTAGAAGGCTCAATGTTCTAGCTATTGATGCAGAAGATTGTAGAAATAACAATGTTTTGGAAATGCTAGAAGGGCTGACCCCTCCTCCAAGCCTCCAAGAGCTATATCTTAGGAATTACAAGAAGGAAACTTTGCCCAACTGGGTTAATCCTGGACAACTTTCGCGATTGCAGTATCTTTGCATCGAGAATGGAGACCTTGTCAAGCTAGGCAGTGGTCAAACCACCTGGAATCTTGAAGGCCTATGTCTCAAGTACTTGATGAGGCTAGAGGTAGACTGGAAGGACTTGGAGAAGGATATGCCTGTACTTCACTACATGGAGATCAGTCATTGTTACAACTTGACGGATTTCCCTTGTTCGGTTATGGAACCTGGGGTCTGGAGAAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

842

Amino Acids

95.86

Weight (kDa)

6.21

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 94 7.8e-13 Rx N-terminal domain
NB-ARC PF00931 161 - 331 4.4e-40 NB-ARC domain
AAA_22 PF13401 183 - 265 4.6e-06 AAA domain
WHD_DRP PF23559 421 - 493 6.5e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 559 - 774 1e-27 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 694 - 778 1e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 670
AccI GTMKAC 2 cut(s) 1440, 2409
AccII CGCG 2 cut(s) 1638, 2299
AccIII TCCGGA 2 cut(s) 713, 1991
AciI CCGC 9 cut(s) 93, 670, 1226, 1417, 1468, 1509, 1636, 1638, 1929
AclWI GGATC 9 cut(s) 270, 283, 296, 1080, 1093, 1319, 1671, 1740, 1754
AcoI YGGCCR 2 cut(s) 94, 616
AcsI RAATTY 4 cut(s) 74, 744, 1502, 1657
AcuI CTGAAG 2 cut(s) 73, 1290
AfaI GTAC 9 cut(s) 234, 322, 531, 756, 1383, 2070, 2092, 2390, 2442
AfeI AGCGCT 2 cut(s) 664, 1763
AfiI CCNNNNNNNGG 3 cut(s) 381, 433, 2494
AflII CTTAAG 2 cut(s) 1757, 1780
AflIII ACRYGT 1 cut(s) 2080
AjnI CCWGG 5 cut(s) 66, 1228, 2284, 2360, 2506
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AloI GAACNNNNNNTCC 4 cut(s) 32, 64, 2106, 2138
Alw21I GWGCWC 1 cut(s) 1989
Alw26I GTCTC 4 cut(s) 164, 715, 2322, 2387
AlwI GGATC 9 cut(s) 270, 283, 296, 1080, 1093, 1319, 1671, 1740, 1754
Aor13HI TCCGGA 2 cut(s) 713, 1991
Aor51HI AGCGCT 2 cut(s) 664, 1763
AoxI GGCC 7 cut(s) 94, 135, 379, 616, 1194, 1321, 2374
ApeKI GCWGC 6 cut(s) 855, 858, 890, 1414, 1672, 1863
ApoI RAATTY 4 cut(s) 74, 744, 1502, 1657
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
Asp700I GAANNNNTTC 1 cut(s) 1969
AspA2I CCTAGG 1 cut(s) 1924
AspLEI GCGC 2 cut(s) 665, 1764
AspS9I GGNCC 4 cut(s) 25, 379, 822, 1921
AsuC2I CCSGG 1 cut(s) 1007
AsuHPI GGTGA 3 cut(s) 121, 448, 527
AvaII GGWCC 3 cut(s) 25, 822, 1921
AvrII CCTAGG 1 cut(s) 1924
AxyI CCTNAGG 1 cut(s) 1953
BaeGI GKGCMC 3 cut(s) 397, 1007, 1812
BamHI GGATCC 2 cut(s) 275, 1085
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 2 cut(s) 1343, 1989
BauI CACGAG 2 cut(s) 1128, 1325
BbsI GAAGAC 4 cut(s) 119, 377, 941, 1278
Bbv12I GWGCWC 1 cut(s) 1989
BbvI GCAGC 6 cut(s) 845, 867, 877, 1426, 1659, 1875
BccI CCATC 4 cut(s) 433, 1268, 1424, 1898
BciT130I CCWGG 5 cut(s) 68, 1230, 2286, 2362, 2508
BclI TGATCA 2 cut(s) 1291, 2055
BcnI CCSGG 1 cut(s) 1007
BcoDI GTCTC 4 cut(s) 164, 715, 2322, 2387
BfmI CTRYAG 1 cut(s) 1080
BfoI RGCGCY 2 cut(s) 666, 1765
BfrI CTTAAG 2 cut(s) 1757, 1780
BisI GCNGC 9 cut(s) 94, 856, 859, 891, 1415, 1510, 1636, 1673, 1864
BlnI CCTAGG 1 cut(s) 1924
BlpI GCTNAGC 2 cut(s) 666, 1765
BlsI GCNGC 9 cut(s) 95, 857, 860, 892, 1416, 1511, 1637, 1674, 1865
BmcAI AGTACT 4 cut(s) 756, 1383, 2070, 2390
Bme1390I CCNGG 6 cut(s) 68, 1007, 1230, 2286, 2362, 2508
Bme18I GGWCC 3 cut(s) 25, 822, 1921
BmgT120I GGNCC 4 cut(s) 25, 379, 822, 1921
BmiI GGNNCC 6 cut(s) 277, 289, 396, 718, 1087, 2505
BmrFI CCNGG 6 cut(s) 68, 1007, 1230, 2286, 2362, 2508
BmrI ACTGGG 1 cut(s) 2284
BmuI ACTGGG 1 cut(s) 2284
BpiI GAAGAC 4 cut(s) 119, 377, 941, 1278
BplI GAGNNNNNCTC 2 cut(s) 1308, 1340
BpmI CTGGAG 1 cut(s) 1157
Bpu10I CCTNAGC 1 cut(s) 1610
Bpu1102I GCTNAGC 2 cut(s) 666, 1765
BpuEI CTTGAG 4 cut(s) 1040, 1327, 2060, 2369
BpuMI CCSGG 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 2322
BsaJI CCNNGG 6 cut(s) 132, 375, 1161, 1636, 1924, 2507
BsaWI WCCGGW 3 cut(s) 397, 713, 1991
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 433, 2494
Bse118I RCCGGY 2 cut(s) 381, 719
Bse1I ACTGG 5 cut(s) 97, 458, 1310, 2279, 2417
Bse21I CCTNAGG 1 cut(s) 1953
Bse3DI GCAATG 3 cut(s) 579, 1127, 1247
BseAI TCCGGA 2 cut(s) 713, 1991
BseBI CCWGG 5 cut(s) 68, 1230, 2286, 2362, 2508
BseDI CCNNGG 6 cut(s) 132, 375, 1161, 1636, 1924, 2507
BseGI GGATG 5 cut(s) 405, 684, 793, 1585, 1720
BseLI CCNNNNNNNGG 3 cut(s) 381, 433, 2494
BseMI GCAATG 3 cut(s) 579, 1127, 1247
BseMII CTCAG 8 cut(s) 456, 599, 657, 743, 1696, 1967, 2054, 2144
BseNI ACTGG 5 cut(s) 97, 458, 1310, 2279, 2417
BseRI GAGGAG 4 cut(s) 694, 1511, 1820, 2208
BseSI GKGCMC 3 cut(s) 397, 1007, 1812
BseXI GCAGC 6 cut(s) 845, 867, 877, 1426, 1659, 1875
BsgI GTGCAG 2 cut(s) 1433, 1690
Bsh1236I CGCG 2 cut(s) 1638, 2299
BshFI GGCC 7 cut(s) 96, 137, 381, 618, 1196, 1323, 2376
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 1989
BsiSI CCGG 8 cut(s) 285, 382, 398, 714, 720, 1007, 1992, 2032
BslI CCNNNNNNNGG 3 cut(s) 381, 433, 2494
BsmAI GTCTC 4 cut(s) 164, 715, 2322, 2387
BsnI GGCC 7 cut(s) 96, 137, 381, 618, 1196, 1323, 2376
Bso31I GGTCTC 1 cut(s) 2322
Bsp1286I GDGCHC 5 cut(s) 397, 1007, 1343, 1812, 1989
Bsp13I TCCGGA 2 cut(s) 713, 1991
Bsp1720I GCTNAGC 2 cut(s) 666, 1765
Bsp68I TCGCGA 1 cut(s) 2299
BspACI CCGC 9 cut(s) 93, 670, 1226, 1417, 1468, 1509, 1636, 1638, 1929
BspANI GGCC 7 cut(s) 96, 137, 381, 618, 1196, 1323, 2376
BspCNI CTCAG 8 cut(s) 457, 598, 658, 742, 1695, 1966, 2055, 2143
BspEI TCCGGA 2 cut(s) 713, 1991
BspFNI CGCG 2 cut(s) 1638, 2299
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 6 cut(s) 277, 289, 396, 718, 1087, 2505
BspPI GGATC 9 cut(s) 270, 283, 296, 1080, 1093, 1319, 1671, 1740, 1754
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 2 cut(s) 1757, 1780
BspTNI GGTCTC 1 cut(s) 2322
BsrBI CCGCTC 1 cut(s) 670
BsrDI GCAATG 3 cut(s) 579, 1127, 1247
BsrFI RCCGGY 2 cut(s) 381, 719
BsrI ACTGG 5 cut(s) 97, 458, 1310, 2279, 2417
BssAI RCCGGY 2 cut(s) 381, 719
BssECI CCNNGG 6 cut(s) 132, 375, 1161, 1636, 1924, 2507
BssSI CACGAG 2 cut(s) 1128, 1325
BssT1I CCWWGG 3 cut(s) 132, 375, 1924
Bst2BI CACGAG 2 cut(s) 1128, 1325
Bst2UI CCWGG 5 cut(s) 68, 1230, 2286, 2362, 2508
Bst4CI ACNGT 5 cut(s) 144, 929, 1381, 1711, 2098
Bst6I CTCTTC 2 cut(s) 1488, 1819
BstAFI CTTAAG 2 cut(s) 1757, 1780
BstAPI GCANNNNNTGC 1 cut(s) 1246
BstC8I GCNNGC 1 cut(s) 1247
BstDSI CCRYGG 1 cut(s) 1636
BstF5I GGATG 5 cut(s) 405, 684, 793, 1585, 1720
BstFNI CGCG 2 cut(s) 1638, 2299
BstH2I RGCGCY 2 cut(s) 666, 1765
BstHHI GCGC 2 cut(s) 665, 1764
BstMAI GTCTC 4 cut(s) 164, 715, 2322, 2387
BstMWI GCNNNNNNNGC 8 cut(s) 77, 1182, 1246, 1749, 2020, 2140, 2162, 2206
BstNI CCWGG 5 cut(s) 68, 1230, 2286, 2362, 2508
BstNSI RCATGY 2 cut(s) 1289, 2084
BstSCI CCNGG 6 cut(s) 66, 1005, 1228, 2284, 2360, 2506
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 3 cut(s) 397, 1007, 1812
BstUI CGCG 2 cut(s) 1638, 2299
BstV1I GCAGC 6 cut(s) 845, 867, 877, 1426, 1659, 1875
BstV2I GAAGAC 4 cut(s) 119, 377, 941, 1278
BstX2I RGATCY 3 cut(s) 275, 1085, 1732
BstYI RGATCY 3 cut(s) 275, 1085, 1732
Bsu36I CCTNAGG 1 cut(s) 1953
BsuRI GGCC 7 cut(s) 96, 137, 381, 618, 1196, 1323, 2376
BtgI CCRYGG 1 cut(s) 1636
BtsCI GGATG 5 cut(s) 405, 684, 793, 1585, 1720
BtsI GCAGTG 1 cut(s) 2353
BtsIMutI CAGTG 3 cut(s) 237, 1707, 2353
BtuMI TCGCGA 1 cut(s) 2299
Cac8I GCNNGC 1 cut(s) 1247
CciI TCATGA 1 cut(s) 598
CfoI GCGC 2 cut(s) 665, 1764
Cfr10I RCCGGY 2 cut(s) 381, 719
Cfr13I GGNCC 4 cut(s) 25, 379, 822, 1921
Cfr42I CCGCGG 1 cut(s) 1639
Csp6I GTAC 9 cut(s) 233, 321, 530, 755, 1382, 2069, 2091, 2389, 2441
CviAII CATG 7 cut(s) 539, 599, 784, 1286, 1457, 2081, 2452
CviQI GTAC 9 cut(s) 233, 321, 530, 755, 1382, 2069, 2091, 2389, 2441
EaeI YGGCCR 2 cut(s) 94, 616
Eam1104I CTCTTC 2 cut(s) 1488, 1819
EarI CTCTTC 2 cut(s) 1488, 1819
EciI GGCGGA 1 cut(s) 1215
Ecl136II GAGCTC 1 cut(s) 1987
Eco130I CCWWGG 3 cut(s) 132, 375, 1924
Eco147I AGGCCT 3 cut(s) 137, 1323, 2376
Eco24I GRGCYC 2 cut(s) 1343, 1989
Eco31I GGTCTC 1 cut(s) 2322
Eco47I GGWCC 3 cut(s) 25, 822, 1921
Eco47III AGCGCT 2 cut(s) 664, 1763
Eco53kI GAGCTC 1 cut(s) 1987
Eco57I CTGAAG 2 cut(s) 73, 1290
Eco81I CCTNAGG 1 cut(s) 1953
EcoICRI GAGCTC 1 cut(s) 1987
EcoRI GAATTC 2 cut(s) 744, 1657
EcoRII CCWGG 5 cut(s) 66, 1228, 2284, 2360, 2506
EcoT14I CCWWGG 3 cut(s) 132, 375, 1924
EcoT22I ATGCAT 1 cut(s) 424
EcoT38I GRGCYC 2 cut(s) 1343, 1989
ErhI CCWWGG 3 cut(s) 132, 375, 1924
FaeI CATG 7 cut(s) 542, 602, 787, 1289, 1460, 2084, 2455
FalI AAGNNNNNCTT 2 cut(s) 1957, 1989
FatI CATG 7 cut(s) 538, 598, 783, 1285, 1456, 2080, 2451
FauI CCCGC 2 cut(s) 1461, 1922
FbaI TGATCA 2 cut(s) 1291, 2055
FblI GTMKAC 2 cut(s) 1440, 2409
Fnu4HI GCNGC 9 cut(s) 94, 856, 859, 891, 1415, 1510, 1636, 1673, 1864
FokI GGATG 5 cut(s) 392, 671, 800, 1592, 1727
FriOI GRGCYC 2 cut(s) 1343, 1989
Fsp4HI GCNGC 9 cut(s) 94, 856, 859, 891, 1415, 1510, 1636, 1673, 1864
GlaI GCGC 2 cut(s) 664, 1763
GluI GCNGC 9 cut(s) 94, 856, 859, 891, 1415, 1510, 1636, 1673, 1864
GsuI CTGGAG 1 cut(s) 1157
HaeII RGCGCY 2 cut(s) 666, 1765
HaeIII GGCC 7 cut(s) 96, 137, 381, 618, 1196, 1323, 2376
HapII CCGG 8 cut(s) 285, 382, 398, 714, 720, 1007, 1992, 2032
HhaI GCGC 2 cut(s) 665, 1764
Hin1II CATG 7 cut(s) 542, 602, 787, 1289, 1460, 2084, 2455
Hin6I GCGC 2 cut(s) 663, 1762
HinP1I GCGC 2 cut(s) 663, 1762
HindIII AAGCTT 1 cut(s) 1607
HpaII CCGG 8 cut(s) 285, 382, 398, 714, 720, 1007, 1992, 2032
HphI GGTGA 3 cut(s) 121, 448, 527
Hpy166II GTNNAC 5 cut(s) 51, 822, 1058, 1441, 2410
Hpy188I TCNGA 8 cut(s) 148, 588, 732, 777, 933, 1316, 1685, 1776
Hpy8I GTNNAC 5 cut(s) 51, 822, 1058, 1441, 2410
Hpy99I CGWCG 2 cut(s) 230, 1520
HpyCH4III ACNGT 5 cut(s) 144, 929, 1381, 1711, 2098
HpyCH4IV ACGT 1 cut(s) 1597
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 1182, 1246, 1749, 2020, 2140, 2162, 2206
HpySE526I ACGT 1 cut(s) 1597
Hsp92II CATG 7 cut(s) 542, 602, 787, 1289, 1460, 2084, 2455
HspAI GCGC 2 cut(s) 663, 1762
Kpn2I TCCGGA 2 cut(s) 713, 1991
Ksp22I TGATCA 2 cut(s) 1291, 2055
KspI CCGCGG 1 cut(s) 1639
LmnI GCTCC 5 cut(s) 40, 293, 681, 716, 1757
Lsp1109I GCAGC 6 cut(s) 845, 867, 877, 1426, 1659, 1875
MaeII ACGT 1 cut(s) 1597
MaeIII GTNAC 4 cut(s) 444, 724, 868, 2468
MbiI CCGCTC 1 cut(s) 670
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 3 cut(s) 275, 1085, 1732
MhlI GDGCHC 5 cut(s) 397, 1007, 1343, 1812, 1989
MlyI GAGTC 5 cut(s) 166, 931, 1053, 1446, 2017
MmeI TCCRAC 6 cut(s) 459, 485, 488, 1342, 1671, 1864
Mph1103I ATGCAT 1 cut(s) 424
MroI TCCGGA 2 cut(s) 713, 1991
MroXI GAANNNNTTC 1 cut(s) 1969
MslI CAYNNNNRTG 1 cut(s) 807
MspA1I CMGCKG 4 cut(s) 93, 858, 1417, 1638
MspCI CTTAAG 2 cut(s) 1757, 1780
MspI CCGG 8 cut(s) 285, 382, 398, 714, 720, 1007, 1992, 2032
MspR9I CCNGG 6 cut(s) 68, 1007, 1230, 2286, 2362, 2508
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 5 cut(s) 68, 1230, 2286, 2362, 2508
MvnI CGCG 2 cut(s) 1638, 2299
MwoI GCNNNNNNNGC 8 cut(s) 77, 1182, 1246, 1749, 2020, 2140, 2162, 2206
NciI CCSGG 1 cut(s) 1007
NlaIII CATG 7 cut(s) 542, 602, 787, 1289, 1460, 2084, 2455
NlaIV GGNNCC 6 cut(s) 277, 289, 396, 718, 1087, 2505
NmuCI GTSAC 1 cut(s) 444
NruI TCGCGA 1 cut(s) 2299
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 2 cut(s) 1289, 2084
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 3 cut(s) 137, 1323, 2376
PciI ACATGT 1 cut(s) 2080
PcsI WCGNNNNNNNCGW 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 1969
PfeI GAWTC 5 cut(s) 457, 799, 921, 1995, 2365
PflFI GACNNNGTC 1 cut(s) 2333
PfoI TCCNGGA 1 cut(s) 2284
PkrI GCNGC 9 cut(s) 95, 857, 860, 892, 1416, 1511, 1637, 1674, 1865
PleI GAGTC 5 cut(s) 165, 931, 1053, 1445, 2016
PpsI GAGTC 5 cut(s) 165, 931, 1053, 1445, 2016
PscI ACATGT 1 cut(s) 2080
Psp124BI GAGCTC 1 cut(s) 1989
Psp6I CCWGG 5 cut(s) 66, 1228, 2284, 2360, 2506
PspGI CCWGG 5 cut(s) 66, 1228, 2284, 2360, 2506
PspN4I GGNNCC 6 cut(s) 277, 289, 396, 718, 1087, 2505
PspPI GGNCC 4 cut(s) 25, 379, 822, 1921
PsuI RGATCY 3 cut(s) 275, 1085, 1732
PsyI GACNNNGTC 1 cut(s) 2333
PvuII CAGCTG 1 cut(s) 858
RruI TCGCGA 1 cut(s) 2299
RsaI GTAC 9 cut(s) 234, 322, 531, 756, 1383, 2070, 2092, 2390, 2442
RsaNI GTAC 9 cut(s) 233, 321, 530, 755, 1382, 2069, 2091, 2389, 2441
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 1989
SacII CCGCGG 1 cut(s) 1639
SatI GCNGC 9 cut(s) 94, 856, 859, 891, 1415, 1510, 1636, 1673, 1864
Sau96I GGNCC 4 cut(s) 25, 379, 822, 1921
ScaI AGTACT 4 cut(s) 756, 1383, 2070, 2390
SchI GAGTC 5 cut(s) 166, 931, 1053, 1446, 2017
ScrFI CCNGG 6 cut(s) 68, 1007, 1230, 2286, 2362, 2508
SduI GDGCHC 5 cut(s) 397, 1007, 1343, 1812, 1989
SfcI CTRYAG 1 cut(s) 1080
Sfr303I CCGCGG 1 cut(s) 1639
SgrBI CCGCGG 1 cut(s) 1639
SinI GGWCC 3 cut(s) 25, 822, 1921
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 6 cut(s) 1019, 1342, 1757, 1780, 2039, 2384
SmoI CTYRAG 6 cut(s) 1019, 1342, 1757, 1780, 2039, 2384
SseBI AGGCCT 3 cut(s) 137, 1323, 2376
SsiI CCGC 9 cut(s) 93, 670, 1226, 1417, 1468, 1509, 1636, 1638, 1929
SspI AATATT 1 cut(s) 1482
SstI GAGCTC 1 cut(s) 1989
StuI AGGCCT 3 cut(s) 137, 1323, 2376
StyD4I CCNGG 6 cut(s) 66, 1005, 1228, 2284, 2360, 2506
StyI CCWWGG 3 cut(s) 132, 375, 1924
TaaI ACNGT 5 cut(s) 144, 929, 1381, 1711, 2098
TaiI ACGT 1 cut(s) 1600
TaqI TCGA 4 cut(s) 84, 1107, 1515, 2319
TatI WGTACW 6 cut(s) 232, 754, 1381, 2068, 2388, 2440
TauI GCSGC 3 cut(s) 96, 1512, 1638
TfiI GAWTC 5 cut(s) 457, 799, 921, 1995, 2365
TscAI CASTG 3 cut(s) 244, 1714, 2353
TseFI GTSAC 1 cut(s) 444
TseI GCWGC 6 cut(s) 855, 858, 890, 1414, 1672, 1863
Tsp45I GTSAC 1 cut(s) 444
TspGWI ACGGA 3 cut(s) 53, 167, 2495
TspRI CASTG 3 cut(s) 244, 1714, 2353
Tth111I GACNNNGTC 1 cut(s) 2333
Vha464I CTTAAG 2 cut(s) 1757, 1780
VpaK11BI GGWCC 3 cut(s) 25, 822, 1921
XapI RAATTY 4 cut(s) 74, 744, 1502, 1657
XbaI TCTAGA 1 cut(s) 604
XceI RCATGY 2 cut(s) 1289, 2084
XmaJI CCTAGG 1 cut(s) 1924
XmiI GTMKAC 2 cut(s) 1440, 2409
XmnI GAANNNNTTC 1 cut(s) 1969
ZrmI AGTACT 4 cut(s) 756, 1383, 2070, 2390
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.