Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Forward (+)

3758367 .. 3760668

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGTCCAGATACATAAGGGAGTTTTTGGCTTCGGAGGCATTTAAAAAGGCAGGGAGAGAAGTAAGCGACGTCGTTCCACGACTGGTGAAGTTTCTCTGCTGCCTCCAAGTCACCAAGACTCACCTTTTCACTGTCACTCTGTCCTACGGTCCCAGCATGCTCCCGACCCTCGGCCTGGCCGGAAATTTGTGCTTGGCTGAACGCATCTCGACCCGGTTCGAAAAACTGGGTGTTGGGGACATTGTCCTCGTACAGTCCCCTGAGGTTCCTTGGAAGTTCATGACCAAGCGCTTGAAAGCCATGGAAGGCCAGTCTGTTACATATTTTGTTGACCCTAAAAACAGTGACAAATCTGAGACTATTGTGGTTCCGAAGGGGCATGTTTGGATAGAGGGAGACAACATCTATGAGTCAAATGATTCAAGAAAATTTGGGCCTGTTCCTTATGGACTTCTTCAAGGCAGAGTCTTTTGGAGGATATGGCCACCTAAAGATTTTGGATCATTGGCGCAAAACAAAGGGAAGGATTCTGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

181

Amino Acids

20.22

Weight (kDa)

9.38

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	2 cut(s)	180, 485
AcsI	RAATTY	2 cut(s)	187, 431
AcyI	GRCGYC	2 cut(s)	5, 72
AfaI	GTAC	1 cut(s)	255
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	173, 178
AgsI	TTSAA	3 cut(s)	298, 426, 461
AjnI	CCWGG	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	353, 393
AlwI	GGATC	1 cut(s)	511
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	5 cut(s)	175, 180, 310, 437, 485
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	187, 431
AspLEI	GCGC	2 cut(s)	294, 514
AspS9I	GGNCC	2 cut(s)	152, 437
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	100, 106, 116
AsuII	TTCGAA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	353, 393
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	179, 217
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 437
BmiI	GGNNCC	3 cut(s)	154, 270, 372
BmrFI	CCNGG	2 cut(s)	179, 217
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	217
BsaHI	GRCGYC	2 cut(s)	5, 72
BsaJI	CCNNGG	3 cut(s)	172, 272, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 178
Bse1I	ACTGG	3 cut(s)	90, 234, 313
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	172, 272, 303
BseLI	CCNNNNNNNGG	2 cut(s)	173, 178
BseMII	CTCAG	2 cut(s)	255, 348
BseNI	ACTGG	3 cut(s)	90, 234, 313
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	5 cut(s)	177, 182, 312, 439, 487
BsiSI	CCGG	2 cut(s)	183, 217
BslFI	GGGAC	3 cut(s)	138, 244, 254
BslI	CCNNNNNNNGG	2 cut(s)	173, 178
BsmAI	GTCTC	2 cut(s)	353, 393
BsmFI	GGGAC	3 cut(s)	138, 244, 254
BsnI	GGCC	5 cut(s)	177, 182, 312, 439, 487
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	503
Bsp19I	CCATGG	1 cut(s)	303
BspANI	GGCC	5 cut(s)	177, 182, 312, 439, 487
BspCNI	CTCAG	2 cut(s)	256, 349
BspHI	TCATGA	2 cut(s)	282, 539
BspLI	GGNNCC	3 cut(s)	154, 270, 372
BspPI	GGATC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	90, 234, 313
BssECI	CCNNGG	3 cut(s)	172, 272, 303
BssMI	GATC	1 cut(s)	503
BssNI	GRCGYC	2 cut(s)	5, 72
BssT1I	CCWWGG	2 cut(s)	272, 303
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	4 cut(s)	136, 152, 258, 347
BstACI	GRCGYC	2 cut(s)	5, 72
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	264, 357
BstDSI	CCRYGG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	294, 514
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	353, 393
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	163, 386
BstSCI	CCNGG	2 cut(s)	177, 215
BstV1I	GCAGC	1 cut(s)	89
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	5 cut(s)	177, 182, 312, 439, 487
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	132, 352
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	2 cut(s)	282, 539
CfoI	GCGC	2 cut(s)	294, 514
Cfr13I	GGNCC	2 cut(s)	152, 437
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	5 cut(s)	160, 283, 304, 383, 540
CviJI	RGCY	8 cut(s)	32, 177, 182, 200, 302, 312, 439, 487
CviKI_1	RGCY	8 cut(s)	32, 177, 182, 200, 302, 312, 439, 487
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	264, 357
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
DraI	TTTAAA	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	180, 485
Eco130I	CCWWGG	2 cut(s)	272, 303
Eco47I	GGWCC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	272, 303
ErhI	CCWWGG	2 cut(s)	272, 303
FaeI	CATG	5 cut(s)	163, 286, 307, 386, 543
FaqI	GGGAC	3 cut(s)	138, 244, 254
FatI	CATG	5 cut(s)	159, 282, 303, 382, 539
Fnu4HI	GCNGC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	103
GlaI	GCGC	2 cut(s)	293, 513
GluI	GCNGC	1 cut(s)	103
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	5 cut(s)	177, 182, 312, 439, 487
HapII	CCGG	2 cut(s)	183, 217
HhaI	GCGC	2 cut(s)	294, 514
Hin1I	GRCGYC	2 cut(s)	5, 72
Hin1II	CATG	5 cut(s)	163, 286, 307, 386, 543
Hin6I	GCGC	2 cut(s)	292, 512
HinP1I	GCGC	2 cut(s)	292, 512
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	5 cut(s)	121, 413, 422, 468, 530
HpaII	CCGG	2 cut(s)	183, 217
HphI	GGTGA	3 cut(s)	100, 106, 116
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	37, 358, 375
Hpy188III	TCNNGA	6 cut(s)	9, 166, 211, 283, 426, 540
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	3 cut(s)	302, 370, 520
HpyCH4III	ACNGT	4 cut(s)	136, 152, 258, 347
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	264, 357
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	5, 72
Hsp92II	CATG	5 cut(s)	163, 286, 307, 386, 543
HspAI	GCGC	2 cut(s)	292, 512
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	4 cut(s)	112, 136, 319, 347
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	2 cut(s)	187, 431
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	3 cut(s)	115, 422, 477
MnlI	CCTC	7 cut(s)	31, 116, 182, 259, 260, 388, 471
Mox20I	TGGCCA	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	487
MspI	CCGG	2 cut(s)	183, 217
MspR9I	CCNGG	2 cut(s)	179, 217
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	503
NlaIII	CATG	5 cut(s)	163, 286, 307, 386, 543
NlaIV	GGNNCC	3 cut(s)	154, 270, 372
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	3 cut(s)	112, 136, 347
NspI	RCATGY	2 cut(s)	163, 386
NspV	TTCGAA	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	163
PagI	TCATGA	2 cut(s)	282, 539
PfeI	GAWTC	2 cut(s)	422, 530
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	3 cut(s)	115, 421, 476
PpsI	GAGTC	3 cut(s)	115, 421, 476
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	154, 270, 372
PspPI	GGNCC	2 cut(s)	152, 437
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	2 cut(s)	152, 437
SchI	GAGTC	3 cut(s)	115, 422, 477
ScrFI	CCNGG	2 cut(s)	179, 217
SetI	ASST	4 cut(s)	75, 129, 270, 493
SfaNI	GCATC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	152
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	187, 431
StyD4I	CCNGG	2 cut(s)	177, 215
StyI	CCWWGG	2 cut(s)	272, 303
TaaI	ACNGT	4 cut(s)	136, 152, 258, 347
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	212, 222
TasI	AATT	2 cut(s)	187, 431
TfiI	GAWTC	2 cut(s)	422, 530
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	139, 352
TseFI	GTSAC	3 cut(s)	112, 136, 347
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	3 cut(s)	112, 136, 347
TspDTI	ATGAA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	139, 352
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	187, 431
XceI	RCATGY	2 cut(s)	163, 386
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.