Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Reverse (-)

41972593 .. 41974312

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1287400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGTTTGGATACATAAGGCAGTTTCTGGCTTCGGAGGCATTCAAAAATACAGGGAGAGAAATAAGGGACGTCGGTCCGAGACTGGTAAAGTTCGTATGCTTCGTCCAAGTCACCAAGACGCACCTCCTCACCGTAGCTCTGTGCTACGGTCCCAGCATGCTCCCGACCATCGGCCTGGCCGGAAATAATTTGTGCTTGGCTGAACGTATCTCGACCCGGTTCGACAGAATCGGTGTCGGAGATATTGTCATGGTACGGTCGCCTGAGGCTCCTCGGAAGACCGTCGCCAAGAGATTGATAGCAACGGAGGGTCAGTCTGTTACTTATGTTGTCGACCCTAAGAACGGTGATCGGTCGGAGACTATAGTGGTTCCTAAGGGACATGTTTGGGTGGAGGGAGACAACATCTATGCCTCGCGTGATTCGAGGAATTTCGGGCCGGTTCCTTACGGGCTTGTTGAAGGCAGAATCTTCTGGAGGATATGGCCGCCTAAAGACTTTGGATCGTTGGAGCAAAGCAAAGGGAAGGATATGGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

182

Amino Acids

20.16

Weight (kDa)

9.37

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	25 - 111	7.5e-09	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	120 - 163	1.8e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	1 cut(s)	421
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	2 cut(s)	180, 488
AcsI	RAATTY	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	173, 347
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	46, 464
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	3 cut(s)	76, 356, 396
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	175, 180, 440, 488
ApoI	RAATTY	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	77, 152, 440
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	106, 124, 362
AvaII	GGWCC	2 cut(s)	77, 152
AxyI	CCTNAGG	2 cut(s)	267, 378
BbsI	GAAGAC	1 cut(s)	287
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	76, 356, 396
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	2 cut(s)	179, 220
Bme18I	GGWCC	2 cut(s)	77, 152
BmgT120I	GGNCC	3 cut(s)	77, 152, 440
BmiI	GGNNCC	4 cut(s)	154, 273, 375, 447
BmrFI	CCNGG	2 cut(s)	179, 220
BoxI	GACNNNNGTC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 347
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	90
Bse21I	CCTNAGG	2 cut(s)	267, 378
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	173, 347
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	119, 264
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	421
Bsh1285I	CGRYCG	2 cut(s)	263, 359
BshFI	GGCC	4 cut(s)	177, 182, 442, 490
BsiEI	CGRYCG	2 cut(s)	263, 359
BsiSI	CCGG	3 cut(s)	183, 220, 443
BslFI	GGGAC	3 cut(s)	83, 138, 396
BslI	CCNNNNNNNGG	2 cut(s)	173, 347
BsmAI	GTCTC	3 cut(s)	76, 356, 396
BsmFI	GGGAC	3 cut(s)	83, 138, 396
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	4 cut(s)	177, 182, 442, 490
Bsp143I	GATC	2 cut(s)	352, 506
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	4 cut(s)	177, 182, 442, 490
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	154, 273, 375, 447
BspPI	GGATC	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	352, 506
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	5 cut(s)	136, 152, 261, 286, 350
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	267, 342, 378
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	355, 509
BstMAI	GTCTC	3 cut(s)	76, 356, 396
BstMBI	GATC	2 cut(s)	352, 506
BstMCI	CGRYCG	2 cut(s)	263, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	163, 389
BstPAI	GACNNNNGTC	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	177, 218
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	178
Bsu36I	CCTNAGG	2 cut(s)	267, 378
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	4 cut(s)	177, 182, 442, 490
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	3 cut(s)	77, 152, 440
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	257
CspI	CGGWCCG	1 cut(s)	77
CviAII	CATG	3 cut(s)	160, 253, 386
CviJI	RGCY	9 cut(s)	32, 140, 177, 182, 203, 272, 442, 457, 490
CviKI_1	RGCY	9 cut(s)	32, 140, 177, 182, 203, 272, 442, 457, 490
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	267, 342, 378
DpnI	GATC	2 cut(s)	354, 508
DpnII	GATC	2 cut(s)	352, 506
EaeI	YGGCCR	2 cut(s)	180, 488
Eco47I	GGWCC	2 cut(s)	77, 152
Eco81I	CCTNAGG	2 cut(s)	267, 378
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	163, 256, 389
FaqI	GGGAC	3 cut(s)	83, 138, 396
FatI	CATG	3 cut(s)	159, 252, 385
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	491
GluI	GCNGC	1 cut(s)	491
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	4 cut(s)	177, 182, 442, 490
HapII	CCGG	3 cut(s)	183, 220, 443
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	163, 256, 389
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	231, 425, 471, 539
HpaII	CCGG	3 cut(s)	183, 220, 443
HphI	GGTGA	3 cut(s)	106, 124, 362
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	5 cut(s)	37, 81, 242, 279, 361
Hpy188III	TCNNGA	4 cut(s)	166, 214, 478, 543
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	2 cut(s)	77, 290
HpyAV	CCTTC	2 cut(s)	458, 523
HpyCH4III	ACNGT	5 cut(s)	136, 152, 261, 286, 350
HpyCH4IV	ACGT	2 cut(s)	72, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	267, 342, 378
HpySE526I	ACGT	2 cut(s)	72, 208
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	163, 256, 389
Kzo9I	GATC	2 cut(s)	352, 506
LmnI	GCTCC	3 cut(s)	168, 277, 514
MaeII	ACGT	2 cut(s)	72, 208
MaeIII	GTNAC	2 cut(s)	112, 322
MalI	GATC	2 cut(s)	354, 508
MboI	GATC	2 cut(s)	352, 506
MboII	GAAGA	2 cut(s)	292, 466
MluCI	AATT	2 cut(s)	190, 433
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	3 cut(s)	220, 339, 492
MspI	CCGG	3 cut(s)	183, 220, 443
MspR9I	CCNGG	2 cut(s)	179, 220
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	352, 506
NlaIII	CATG	3 cut(s)	163, 256, 389
NlaIV	GGNNCC	4 cut(s)	154, 273, 375, 447
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	163, 389
PaeI	GCATGC	1 cut(s)	163
PciI	ACATGT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 425
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	231, 425, 471
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PscI	ACATGT	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	154, 273, 375, 447
PspPI	GGNCC	3 cut(s)	77, 152, 440
PstNI	CAGNNNCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SalI	GTCGAC	1 cut(s)	335
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	352, 506
Sau96I	GGNCC	3 cut(s)	77, 152, 440
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	179, 220
SetI	ASST	4 cut(s)	75, 129, 142, 211
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	2 cut(s)	77, 152
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	190, 433
SsiI	CCGC	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	177, 218
TaaI	ACNGT	5 cut(s)	136, 152, 261, 286, 350
TaiI	ACGT	2 cut(s)	75, 211
TaqI	TCGA	4 cut(s)	215, 225, 336, 428
TaqII	GACCGA	2 cut(s)	65, 345
TasI	AATT	2 cut(s)	190, 433
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	3 cut(s)	231, 425, 471
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	77, 152
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	2 cut(s)	163, 389
XmiI	GTMKAC	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.