AT1G29960

Mitochondrial inner membrane protease subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10494627 .. 10496205
1579 bp
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UTR
Exon/CDS
Intron
AT1G29960.1

Sequence Viewer

Length: 510 bp
ATGGCGACTCCGTCGTCGTCTTTCTGGAACACAGCTTCACGAGAAGCCATGAAAAGCGGCGTGTTACTCGCGAAACTCTACTGCTTTCTTCATGTAACAACAAACTATCTCGGATTCATGGCTTATGCTTATGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGAAATGTGTTATTAGCGGAGAGAATCTCGAAGCGGTATCAGAAACCGAGTCGTGGAGATATAGTTGTGATACGATCTCCAGAAAACCCTAATAAGACTCCAATTAAAAGAGTTATTGGTATTGAAGGTGATTGTATAAGCTTTGTGATTGATTCAAGGAAGAGTGATGAATCTCAAACCATTGTGGTTCCTAAAGGACATGTCTTTGTTCAAGGTGACTATACTCATAACTCACGAGACTCAAGAAACTTTGGTACTGTACCTTACGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGTTTGGCCATTTCAAGATTTTGGACCGCTTGGACCAACCCCAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.61

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 29 - 103 1.3e-14 Signal peptidase, peptidase S26
Peptidase_S26 PF10502 114 - 156 4.4e-09 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 57, 182, 199, 488
AcoI YGGCCR 1 cut(s) 467
AfaI GTAC 2 cut(s) 421, 426
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 5 cut(s) 290, 321, 377, 443, 476
AluBI AGCT 2 cut(s) 35, 306
AluI AGCT 2 cut(s) 35, 306
Alw26I GTCTC 1 cut(s) 396
AoxI GGCC 1 cut(s) 467
AspS9I GGNCC 3 cut(s) 134, 485, 494
AsuHPI GGTGA 2 cut(s) 305, 392
AvaII GGWCC 3 cut(s) 134, 485, 494
BalI TGGCCA 1 cut(s) 469
BauI CACGAG 2 cut(s) 39, 399
BcoDI GTCTC 1 cut(s) 396
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme18I GGWCC 3 cut(s) 134, 485, 494
BmgT120I GGNCC 3 cut(s) 134, 485, 494
BmiI GGNNCC 1 cut(s) 354
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 176, 208
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 469
Bsp143I GATC 1 cut(s) 239
Bsp68I TCGCGA 1 cut(s) 71
BspACI CCGC 4 cut(s) 57, 182, 199, 488
BspANI GGCC 1 cut(s) 469
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 354
BssMI GATC 1 cut(s) 239
BssSI CACGAG 2 cut(s) 39, 399
Bst2BI CACGAG 2 cut(s) 39, 399
Bst4CI ACNGT 2 cut(s) 424, 434
Bst6I CTCTTC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 368
BstUI CGCG 1 cut(s) 71
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 157
BtuMI TCGCGA 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 134, 485, 494
CseI GACGC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 420, 425
CviAII CATG 5 cut(s) 49, 92, 118, 142, 365
CviJI RGCY 5 cut(s) 35, 47, 122, 306, 469
CviKI_1 RGCY 5 cut(s) 35, 47, 122, 306, 469
CviQI GTAC 2 cut(s) 420, 425
DdeI CTNAG 1 cut(s) 507
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco47I GGWCC 3 cut(s) 134, 485, 494
FaeI CATG 5 cut(s) 52, 95, 121, 145, 368
FatI CATG 5 cut(s) 48, 91, 117, 141, 364
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 469
HgaI GACGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 52, 95, 121, 145, 368
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 9 cut(s) 7, 114, 145, 189, 214, 262, 317, 335, 404
HphI GGTGA 2 cut(s) 305, 392
Hpy188I TCNGA 4 cut(s) 113, 138, 150, 207
Hpy188III TCNNGA 9 cut(s) 25, 39, 70, 165, 193, 245, 399, 408, 476
Hpy99I CGWCG 3 cut(s) 16, 19, 154
HpyAV CCTTC 2 cut(s) 171, 284
HpyCH4III ACNGT 2 cut(s) 424, 434
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 5 cut(s) 52, 95, 121, 145, 368
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 2 cut(s) 10, 258
MaeIII GTNAC 3 cut(s) 63, 94, 380
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 80, 337
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 469
MlyI GAGTC 4 cut(s) 139, 223, 256, 398
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 1 cut(s) 453
Mox20I TGGCCA 1 cut(s) 469
MscI TGGCCA 1 cut(s) 469
MseI TTAA 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 469
MvnI CGCG 1 cut(s) 71
NdeII GATC 1 cut(s) 239
NlaIII CATG 5 cut(s) 52, 95, 121, 145, 368
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 380
NruI TCGCGA 1 cut(s) 71
NspI RCATGY 1 cut(s) 368
PciI ACATGT 1 cut(s) 364
PfeI GAWTC 4 cut(s) 114, 189, 317, 335
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 4 cut(s) 139, 222, 256, 398
PpsI GAGTC 4 cut(s) 139, 222, 256, 398
PscI ACATGT 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 3 cut(s) 134, 485, 494
PsyI GACNNNGTC 1 cut(s) 10
RruI TCGCGA 1 cut(s) 71
RsaI GTAC 2 cut(s) 421, 426
RsaNI GTAC 2 cut(s) 420, 425
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 3 cut(s) 134, 485, 494
SchI GAGTC 4 cut(s) 139, 223, 256, 398
SetI ASST 5 cut(s) 37, 295, 308, 382, 430
SinI GGWCC 3 cut(s) 134, 485, 494
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 1 cut(s) 267
SsiI CCGC 4 cut(s) 57, 182, 199, 488
TaaI ACNGT 2 cut(s) 424, 434
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 4 cut(s) 114, 189, 317, 335
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 5 cut(s) 65, 80, 106, 146, 348
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 3 cut(s) 134, 485, 494
XceI RCATGY 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.