Rorug05G0010000

Mitochondrial inner membrane protease subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
604015 .. 606127
2113 bp
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UTR
Exon/CDS
Intron
Rorug05G0010000.1

Sequence Viewer

Length: 483 bp
ATGGGTGCTGAAGCTTCAGCAAGACTTGTTAGTGAACTTGTAATTCTATGCCTCATCTCTACTCTTTGTCTGCAGCTTGGATCTGAATTCAAATATCAGAGTATAGCTGAAACGTTGCCCACAGAAGAAGTGAGAGCTCTTTATGAAATAGCATATCAGTTGGGGTTAAACCCTGAAAAGTTATCTGGAGGCTCAATTTGCACGGAGAGAAGCTATGAAATCAAATGTAACTGCAATTTTGAAAACAACACCATTTGCCACATCATAGAAATTGCATTGATTGGCAGCGGTTTGACTGGAGTTATACCTAAAGAACTGGCCAATCTCACACATCTGGAGAGCCTGAATCTCCAGAAAAATCAATTGACTGGTTCCATACCTGCTAGCTTGGGGAATTTATCTTTGCTCCACAGCCTATGTGCTCTTCAAAGTGCTCATCAAACTCATTTGGGGCCTCTTTATATAGAGGATTACAAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.4

Weight (kDa)

5.14

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
AciI CCGC 1 cut(s) 288
AclI AACGTT 1 cut(s) 113
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 86, 394
AcuI CTGAAG 1 cut(s) 30
AgsI TTSAA 3 cut(s) 91, 242, 428
AluBI AGCT 6 cut(s) 14, 76, 107, 137, 213, 387
AluI AGCT 6 cut(s) 14, 76, 107, 137, 213, 387
Alw21I GWGCWC 3 cut(s) 139, 424, 436
AlwI GGATC 1 cut(s) 88
AoxI GGCC 2 cut(s) 318, 452
ApeKI GCWGC 2 cut(s) 73, 285
ApoI RAATTY 2 cut(s) 86, 394
AspS9I GGNCC 1 cut(s) 452
AsuNHI GCTAGC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 3 cut(s) 139, 424, 436
BbvI GCAGC 2 cut(s) 85, 297
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 2 cut(s) 74, 286
BlsI GCNGC 2 cut(s) 75, 287
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 373, 453
BmtI GCTAGC 1 cut(s) 387
BpmI CTGGAG 4 cut(s) 207, 318, 335, 356
Bse1I ACTGG 3 cut(s) 301, 321, 373
BseNI ACTGG 3 cut(s) 301, 321, 373
BseXI GCAGC 2 cut(s) 85, 297
BshFI GGCC 2 cut(s) 320, 454
BsiHKAI GWGCWC 3 cut(s) 139, 424, 436
BsnI GGCC 2 cut(s) 320, 454
Bsp1286I GDGCHC 3 cut(s) 139, 424, 436
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 1 cut(s) 288
BspANI GGCC 2 cut(s) 320, 454
BspLI GGNNCC 2 cut(s) 373, 453
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 429
BsrI ACTGG 3 cut(s) 301, 321, 373
BssMI GATC 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 385
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 85, 297
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 320, 454
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 452
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 74, 286
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 74, 286
FspBI CTAG 1 cut(s) 384
GluI GCNGC 2 cut(s) 74, 286
GsuI CTGGAG 4 cut(s) 207, 318, 335, 356
HaeIII GGCC 2 cut(s) 320, 454
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 85, 99
Hpy188III TCNNGA 3 cut(s) 186, 335, 352
Hpy8I GTNNAC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 73, 201, 234, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 113
Kzo9I GATC 1 cut(s) 80
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 411
LpnPI CCDG 9 cut(s) 171, 186, 282, 302, 320, 354, 356, 365, 393
Lsp1109I GCAGC 2 cut(s) 85, 297
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 2 cut(s) 137, 416
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 3 cut(s) 139, 424, 436
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 7 cut(s) 42, 86, 195, 235, 270, 362, 394
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 4 cut(s) 62, 182, 460, 465
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 288
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 1 cut(s) 80
NheI GCTAGC 1 cut(s) 383
NlaIV GGNNCC 2 cut(s) 373, 453
PciSI GCTCTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 75, 287
Psp124BI GAGCTC 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 373, 453
PspPI GGNCC 1 cut(s) 452
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 80
SacI GAGCTC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 74, 286
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 452
SduI GDGCHC 3 cut(s) 139, 424, 436
SetI ASST 9 cut(s) 16, 78, 109, 116, 139, 215, 310, 382, 389
SfcI CTRYAG 1 cut(s) 71
Sse9I AATT 7 cut(s) 42, 86, 195, 235, 270, 362, 394
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 139
TaiI ACGT 1 cut(s) 116
TasI AATT 7 cut(s) 42, 86, 195, 235, 270, 362, 394
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 2 cut(s) 73, 285
TspDTI ATGAA 2 cut(s) 159, 231
TspGWI ACGGA 1 cut(s) 218
XapI RAATTY 2 cut(s) 86, 394
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.