Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006032

Physical Location & Seq

Genomic Coordinates Reverse (-)

27795453 .. 27797579

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAATTACCTCATATTTTAGTTTCTGCCAATATCTCAGTTACATTTATACTTGTAATTGTAATTGTGAGACTCTCTCTCTCTCTCTCTCTCTTCCCCACCCACCACTCTCACTGTACATCTCTACTCCCATGGCGTTTGGATACATAAGGCAGTTTCTGGCTTCGGAGGCGTTCAAAAATTCAGGGAGAGAAATAAGAGACGTCGTTCCGAGACTGGTAAAGTTCTTATGCTTCGTCCAAGTCACCAAGACGCACCTCCTCACCGTAGCTCTGTGCTACGGTCCCAGCATGCTCCCGACCATCGGCCTGGCCGGAAATAATTTGTGCTTGGCTGAACGCATCTCGACCCGGTTCGAAAGAATCGGTGTCGGAGATATTGTCATGGTACGGTCGTCTGAGGCTCCTCGGAAGACCGTCGCCAAGAGATTGATAGCAACGGAGGGTCAGTCTGTTACTTATGTTGTCGACCCTAAGAACGGTGATCGGTCGGAGACATTAGTGGTTCCTAAGGGACATGTTTGGGTAGAGGGAGACAACATCTATGCCTCGCGTGATTCGAGGAATTTCGGGCCGGTTCCTTACGGGCTTGTTGAAGGCAGAATCTTCTGGAGGATATGGCCGCCCAAAGACTTTGGATCGTTGGAGCAAAGCAAAAGGAAGGATATGGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

226

Amino Acids

25.34

Weight (kDa)

9.07

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	67 - 155	6.6e-08	Signal peptidase, peptidase S26
Peptidase_S26	PF10502	164 - 207	2.5e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23465 AT1G29960 AT1G29960
fragaria_vesca	FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970 FvH4_3g05970
malus_domestica	MD05G1287400.v1.1
prunus_persica	Prupe.4G077300_v2.0.a1
pyrus_communis	pycom05g26590
rosa_chinensis	RchiOBHm_Chr5g0013501
rosa_laevigata	RLG00000032020
rosa_multiflora	Rmu_sc0003458.1_g000020 Rmu_sc0020049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063070
rosa_rugosa	Rorug05G0009600 Rorug05G0009700 Rorug05G0009800 Rorug05G0009900 Rorug05G0010000
rosa_samantha	Rh5AG105000 Rh5BG101200 Rh5CG113100
rosa_wichuraiana	Rw5G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	553
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	2 cut(s)	312, 620
AcsI	RAATTY	2 cut(s)	181, 565
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	119, 390
AfiI	CCNNNNNNNGG	2 cut(s)	305, 479
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	178, 596
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	5 cut(s)	65, 195, 208, 488, 528
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	4 cut(s)	307, 312, 572, 620
ApoI	RAATTY	2 cut(s)	181, 565
AspS9I	GGNCC	2 cut(s)	284, 572
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	238, 256, 494
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	510
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbsI	GAAGAC	1 cut(s)	419
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	5 cut(s)	65, 195, 208, 488, 528
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme1390I	CCNGG	2 cut(s)	311, 352
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	284, 572
BmiI	GGNNCC	4 cut(s)	286, 405, 507, 579
BmrFI	CCNGG	2 cut(s)	311, 352
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	419
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	631
Bpu14I	TTCGAA	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	132, 407
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 479
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	132, 407
BseLI	CCNNNNNNNGG	2 cut(s)	305, 479
BseMII	CTCAG	2 cut(s)	52, 390
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	251, 396
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	553
Bsh1285I	CGRYCG	2 cut(s)	395, 491
BshFI	GGCC	4 cut(s)	309, 314, 574, 622
BsiEI	CGRYCG	2 cut(s)	395, 491
BsiSI	CCGG	3 cut(s)	315, 352, 575
BslFI	GGGAC	2 cut(s)	270, 528
BslI	CCNNNNNNNGG	2 cut(s)	305, 479
BsmAI	GTCTC	5 cut(s)	65, 195, 208, 488, 528
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	270, 528
BsnI	GGCC	4 cut(s)	309, 314, 574, 622
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	484, 638
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	4 cut(s)	309, 314, 574, 622
BspCNI	CTCAG	2 cut(s)	51, 391
BspFNI	CGCG	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	674
BspLI	GGNNCC	4 cut(s)	286, 405, 507, 579
BspPI	GGATC	1 cut(s)	646
BspT104I	TTCGAA	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	132, 407
BssMI	GATC	2 cut(s)	484, 638
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	6 cut(s)	117, 268, 284, 393, 418, 482
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	38, 399, 474, 510
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	553
BstKTI	GATC	2 cut(s)	487, 641
BstMAI	GTCTC	5 cut(s)	65, 195, 208, 488, 528
BstMBI	GATC	2 cut(s)	484, 638
BstMCI	CGRYCG	2 cut(s)	395, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	2 cut(s)	295, 521
BstSCI	CCNGG	2 cut(s)	309, 350
BstUI	CGCG	1 cut(s)	553
BstV2I	GAAGAC	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	309, 314, 574, 622
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	674
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	284, 572
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	118, 389
CviAII	CATG	5 cut(s)	133, 292, 385, 518, 675
CviJI	RGCY	9 cut(s)	164, 272, 309, 314, 335, 404, 574, 589, 622
CviKI_1	RGCY	9 cut(s)	164, 272, 309, 314, 335, 404, 574, 589, 622
CviQI	GTAC	2 cut(s)	118, 389
DdeI	CTNAG	4 cut(s)	38, 399, 474, 510
DpnI	GATC	2 cut(s)	486, 640
DpnII	GATC	2 cut(s)	484, 638
EaeI	YGGCCR	2 cut(s)	312, 620
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	5 cut(s)	136, 295, 388, 521, 678
FaqI	GGGAC	2 cut(s)	270, 528
FatI	CATG	5 cut(s)	132, 291, 384, 517, 674
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	623
Fsp4HI	GCNGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	623
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	4 cut(s)	309, 314, 574, 622
HapII	CCGG	3 cut(s)	315, 352, 575
HgaI	GACGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	5 cut(s)	136, 295, 388, 521, 678
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	5 cut(s)	73, 363, 557, 603, 671
HpaII	CCGG	3 cut(s)	315, 352, 575
HphI	GGTGA	3 cut(s)	238, 256, 494
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	6 cut(s)	169, 213, 374, 400, 411, 493
Hpy188III	TCNNGA	4 cut(s)	298, 346, 610, 675
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	2 cut(s)	209, 422
HpyAV	CCTTC	2 cut(s)	590, 655
HpyCH4III	ACNGT	6 cut(s)	117, 268, 284, 393, 418, 482
HpyCH4IV	ACGT	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	38, 399, 474, 510
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	136, 295, 388, 521, 678
Kzo9I	GATC	2 cut(s)	484, 638
LmnI	GCTCC	3 cut(s)	300, 409, 646
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	3 cut(s)	41, 244, 454
MalI	GATC	2 cut(s)	486, 640
MboI	GATC	2 cut(s)	484, 638
MboII	GAAGA	3 cut(s)	86, 424, 598
MluCI	AATT	6 cut(s)	6, 58, 64, 181, 322, 565
MlyI	GAGTC	2 cut(s)	67, 665
MmeI	TCCRAC	3 cut(s)	352, 471, 624
MspI	CCGG	3 cut(s)	315, 352, 575
MspR9I	CCNGG	2 cut(s)	311, 352
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	352
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	484, 638
NlaIII	CATG	5 cut(s)	136, 295, 388, 521, 678
NlaIV	GGNNCC	4 cut(s)	286, 405, 507, 579
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	2 cut(s)	295, 521
NspV	TTCGAA	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	295
PagI	TCATGA	1 cut(s)	674
PciI	ACATGT	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PfeI	GAWTC	3 cut(s)	363, 557, 603
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	2 cut(s)	67, 665
PpsI	GAGTC	2 cut(s)	67, 665
PscI	ACATGT	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	286, 405, 507, 579
PspPI	GGNCC	2 cut(s)	284, 572
PstNI	CAGNNNCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	119, 390
RsaNI	GTAC	2 cut(s)	118, 389
SalI	GTCGAC	1 cut(s)	467
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	2 cut(s)	484, 638
Sau96I	GGNCC	2 cut(s)	284, 572
SchI	GAGTC	2 cut(s)	67, 665
ScrFI	CCNGG	2 cut(s)	311, 352
SetI	ASST	4 cut(s)	14, 207, 261, 274
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	284
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	6 cut(s)	6, 58, 64, 181, 322, 565
SsiI	CCGC	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	309, 350
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	6 cut(s)	117, 268, 284, 393, 418, 482
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	347, 357, 468, 560
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	6, 58, 64, 181, 322, 565
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	3 cut(s)	363, 557, 603
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	181, 565
XceI	RCATGY	2 cut(s)	295, 521
XmiI	GTMKAC	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.