AT1G24110

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014949
Physical Location & Seq
Forward (+)
8527714 .. 8529018
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24110.1

Sequence Viewer

Length: 981 bp
ATGAAATCTTTTGGTTTATGTCTGTTTATTCTCGTATCTTCTCCATGTCTCCTTCAAGCCAATCTCTCGTCTGATTATTACACCAAAACATGTCCTGAATTCGAGGAAACACTCGTACAAATCGTCACCGATAAACAAATTGCAGCTCCAACAACAGCTGTCGGAACACTCCGTCTCTTTTTCCACGATTGCATGGTTGATGGCTGCGACGCCTCAATCCTCGTTGCTTCTACTCCACGTAAAACCTCCGAACGTGACGCCGATATCAACCGTTCTCTTCCTGGAGACGCATTCGACGTAATCACACGTATCAAAACCGCCGTCGAGCTAAAATGTCCAAACATTGTTTCTTGCTCCGATATCCTCGTTGGTGCAACACGTAGTTTAATCTCAATGGTCGGAGGTCCGAGAGTTAACGTTAAGTTCGGTCGGAAAGATAGTCTTGTCTCTGATATGAATCGTGTTGAAGGAAAACTAGCTCGACCTAACATGACTATGGATCATATCATTTCTATTTTCGAGTCTAGTGGTCTGACCGTTCAAGAAATGGTTGCTCTTGTTGGTGCTCACACCATTGGTTTCTCTCATTGCAAAGAGTTCGCGAGTCGGATCTTTAACAAGTCTGATCAAAATGGTCCGGTGGAGATGAATCCGAAATACGCGGCGGAGCTGAGGAAGTTGTGTGCGAATTACACCAATGATGAACAGATGTCTGCGTTTAATGACGTTTTTACTCCAGGGAAATTTGATAATATGTATTACAAGAATTTGAAGCACGGTTACGGGTTGCTCCAGTCCGATCACGCGATTGCGTTTGACAACAGGACGCGCTCGCTGGTGGATCTTTACGCGGAGGACGAAACGGCGTTCTTTGACGCGTTTGCGAAGGCTATGGAGAAAGTTAGTGAGAAGAATGTGAAGACGGGGAAGCTTGGAGAAGTAAGAAGGCGGTGTGATCAATACAATGACTACAAGGGATAA

Protein Analysis

326

Amino Acids

36.25

Weight (kDa)

6.33

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 286 4.7e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
AciI CCGC 5 cut(s) 318, 662, 665, 851, 949
AclI AACGTT 1 cut(s) 417
AclWI GGATC 3 cut(s) 507, 617, 849
AcsI RAATTY 3 cut(s) 98, 743, 766
AcyI GRCGYC 2 cut(s) 210, 258
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 4 cut(s) 89, 305, 377, 876
AgsI TTSAA 4 cut(s) 56, 467, 542, 772
AjnI CCWGG 2 cut(s) 280, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 6 cut(s) 146, 158, 328, 479, 670, 931
AluI AGCT 6 cut(s) 146, 158, 328, 479, 670, 931
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 4 cut(s) 53, 179, 279, 451
AlwI GGATC 3 cut(s) 507, 617, 849
ApeKI GCWGC 2 cut(s) 143, 204
ApoI RAATTY 3 cut(s) 98, 743, 766
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 2 cut(s) 404, 635
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 2 cut(s) 404, 635
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 568
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 2 cut(s) 155, 191
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 305, 879
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BciT130I CCWGG 2 cut(s) 282, 738
BclI TGATCA 2 cut(s) 625, 955
BcoDI GTCTC 4 cut(s) 53, 179, 279, 451
BfaI CTAG 2 cut(s) 476, 525
BisI GCNGC 3 cut(s) 144, 205, 663
BlsI GCNGC 3 cut(s) 145, 206, 664
Bme1390I CCNGG 2 cut(s) 282, 738
Bme18I GGWCC 2 cut(s) 404, 635
BmgT120I GGNCC 2 cut(s) 404, 635
BmrFI CCNGG 2 cut(s) 282, 738
BpiI GAAGAC 1 cut(s) 926
BpmI CTGGAG 3 cut(s) 303, 720, 776
Bpu10I CCTNAGC 1 cut(s) 671
BsaAI YACGTR 3 cut(s) 239, 308, 380
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 2 cut(s) 210, 258
BsaJI CCNNGG 1 cut(s) 737
BsaWI WCCGGW 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 282, 738
BseDI CCNNGG 1 cut(s) 737
BseJI GATNNNNATC 1 cut(s) 456
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 1 cut(s) 793
BseXI GCAGC 2 cut(s) 155, 191
Bsh1236I CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
Bsh1285I CGRYCG 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 1 cut(s) 638
BsmAI GTCTC 4 cut(s) 53, 179, 279, 451
BsmBI CGTCTC 2 cut(s) 179, 279
BsmI GAATGC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 6 cut(s) 499, 609, 625, 799, 841, 955
Bsp68I TCGCGA 1 cut(s) 602
BspACI CCGC 5 cut(s) 318, 662, 665, 851, 949
BspCNI CTCAG 1 cut(s) 663
BspFNI CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
BspPI GGATC 3 cut(s) 507, 617, 849
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 1 cut(s) 737
BssMI GATC 6 cut(s) 499, 609, 625, 799, 841, 955
BssNI GRCGYC 2 cut(s) 210, 258
Bst2UI CCWGG 2 cut(s) 282, 738
Bst4CI ACNGT 3 cut(s) 272, 538, 779
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 2 cut(s) 210, 258
BstBAI YACGTR 3 cut(s) 239, 308, 380
BstC8I GCNNGC 1 cut(s) 833
BstDEI CTNAG 1 cut(s) 671
BstFNI CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 6 cut(s) 502, 612, 628, 802, 844, 958
BstMAI GTCTC 4 cut(s) 53, 179, 279, 451
BstMBI GATC 6 cut(s) 499, 609, 625, 799, 841, 955
BstMCI CGRYCG 1 cut(s) 430
BstNI CCWGG 2 cut(s) 282, 738
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 280, 736
BstUI CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
BstV1I GCAGC 2 cut(s) 155, 191
BstV2I GAAGAC 1 cut(s) 926
BstX2I RGATCY 2 cut(s) 609, 841
BstYI RGATCY 2 cut(s) 609, 841
BtuMI TCGCGA 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 833
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 404, 635
CseI GACGC 5 cut(s) 218, 266, 296, 835, 884
Csp6I GTAC 1 cut(s) 116
CviAII CATG 4 cut(s) 45, 90, 193, 490
CviJI RGCY 9 cut(s) 59, 146, 158, 204, 328, 479, 670, 890, 931
CviKI_1 RGCY 9 cut(s) 59, 146, 158, 204, 328, 479, 670, 890, 931
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 671
DpnI GATC 6 cut(s) 501, 611, 627, 801, 843, 957
DpnII GATC 6 cut(s) 499, 609, 625, 799, 841, 955
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 680
Eco32I GATATC 2 cut(s) 265, 361
Eco47I GGWCC 2 cut(s) 404, 635
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 280, 736
EcoRV GATATC 2 cut(s) 265, 361
Esp3I CGTCTC 2 cut(s) 179, 279
FaeI CATG 4 cut(s) 48, 93, 196, 493
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 4 cut(s) 44, 89, 192, 489
FbaI TGATCA 2 cut(s) 625, 955
Fnu4HI GCNGC 3 cut(s) 144, 205, 663
Fsp4HI GCNGC 3 cut(s) 144, 205, 663
FspBI CTAG 2 cut(s) 476, 525
GlaI GCGC 1 cut(s) 830
GluI GCNGC 3 cut(s) 144, 205, 663
GsuI CTGGAG 3 cut(s) 303, 720, 776
HapII CCGG 1 cut(s) 638
HgaI GACGC 5 cut(s) 218, 266, 296, 835, 884
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 2 cut(s) 210, 258
Hin1II CATG 4 cut(s) 48, 93, 196, 493
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 4 cut(s) 457, 521, 604, 649
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 1 cut(s) 638
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 3 cut(s) 95, 542, 601
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 3 cut(s) 212, 299, 326
HpyAV CCTTC 4 cut(s) 62, 461, 880, 939
HpyCH4III ACNGT 3 cut(s) 272, 538, 779
HpyCH4IV ACGT 7 cut(s) 238, 253, 297, 307, 379, 417, 726
HpyCH4V TGCA 4 cut(s) 143, 192, 374, 591
HpyF3I CTNAG 1 cut(s) 671
HpySE526I ACGT 7 cut(s) 238, 253, 297, 307, 379, 417, 726
Hsp92I GRCGYC 2 cut(s) 210, 258
Hsp92II CATG 4 cut(s) 48, 93, 196, 493
HspAI GCGC 1 cut(s) 829
Ksp22I TGATCA 2 cut(s) 625, 955
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 6 cut(s) 499, 609, 625, 799, 841, 955
LmnI GCTCC 4 cut(s) 151, 359, 667, 795
LpnPI CCDG 9 cut(s) 108, 267, 294, 651, 723, 750, 806, 808, 821
Lsp1109I GCAGC 2 cut(s) 155, 191
MaeI CTAG 2 cut(s) 476, 525
MaeII ACGT 7 cut(s) 238, 253, 297, 307, 379, 417, 726
MaeIII GTNAC 3 cut(s) 124, 254, 779
MalI GATC 6 cut(s) 501, 611, 627, 801, 843, 957
MboI GATC 6 cut(s) 499, 609, 625, 799, 841, 955
MboII GAAGA 4 cut(s) 30, 269, 922, 931
MflI RGATCY 2 cut(s) 609, 841
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 5 cut(s) 98, 138, 688, 743, 766
MluI ACGCGT 1 cut(s) 876
MlyI GAGTC 2 cut(s) 530, 613
MmeI TCCRAC 5 cut(s) 142, 173, 379, 410, 587
MnlI CCTC 8 cut(s) 97, 223, 230, 256, 374, 395, 666, 847
MseI TTAA 5 cut(s) 386, 414, 420, 615, 720
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 282, 738
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 2 cut(s) 282, 738
MvnI CGCG 6 cut(s) 602, 662, 806, 829, 851, 878
NdeII GATC 6 cut(s) 499, 609, 625, 799, 841, 955
NlaIII CATG 4 cut(s) 48, 93, 196, 493
NmuCI GTSAC 2 cut(s) 124, 254
NruI TCGCGA 1 cut(s) 602
NspI RCATGY 1 cut(s) 93
PciI ACATGT 1 cut(s) 89
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 294, 855
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 457, 649
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 3 cut(s) 145, 206, 664
PleI GAGTC 2 cut(s) 529, 612
PpsI GAGTC 2 cut(s) 529, 612
Ppu21I YACGTR 3 cut(s) 239, 308, 380
PscI ACATGT 1 cut(s) 89
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 280, 736
PspGI CCWGG 2 cut(s) 280, 736
PspPI GGNCC 2 cut(s) 404, 635
PsuI RGATCY 2 cut(s) 609, 841
PvuII CAGCTG 1 cut(s) 158
RruI TCGCGA 1 cut(s) 602
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 494
SaqAI TTAA 5 cut(s) 386, 414, 420, 615, 720
SatI GCNGC 3 cut(s) 144, 205, 663
Sau3AI GATC 6 cut(s) 499, 609, 625, 799, 841, 955
Sau96I GGNCC 2 cut(s) 404, 635
SchI GAGTC 2 cut(s) 530, 613
ScrFI CCNGG 2 cut(s) 282, 738
SduI GDGCHC 1 cut(s) 568
SinI GGWCC 2 cut(s) 404, 635
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 5 cut(s) 98, 138, 688, 743, 766
SsiI CCGC 5 cut(s) 318, 662, 665, 851, 949
SspMI CTAG 2 cut(s) 476, 525
StyD4I CCNGG 2 cut(s) 280, 736
TaaI ACNGT 3 cut(s) 272, 538, 779
TaiI ACGT 7 cut(s) 241, 256, 300, 310, 382, 420, 729
TaqI TCGA 5 cut(s) 102, 294, 324, 481, 519
TaqII GACCGA 1 cut(s) 416
TasI AATT 5 cut(s) 98, 138, 688, 743, 766
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 2 cut(s) 457, 649
Tru1I TTAA 5 cut(s) 386, 414, 420, 615, 720
Tru9I TTAA 5 cut(s) 386, 414, 420, 615, 720
TseFI GTSAC 2 cut(s) 124, 254
TseI GCWGC 2 cut(s) 143, 204
Tsp45I GTSAC 2 cut(s) 124, 254
TspDTI ATGAA 4 cut(s) 17, 470, 662, 717
TspGWI ACGGA 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 404, 635
XapI RAATTY 3 cut(s) 98, 743, 766
XceI RCATGY 1 cut(s) 93
XspI CTAG 2 cut(s) 476, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.