MD13G1086200.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014949
Physical Location & Seq
Reverse (-)
6068702 .. 6069789
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1086200.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGGCATTCCATTCCCATGCCCTTTTCTCCCTTCTCACCCTAGTGTTTCTCATTCCCACCCTAACAGTGACCCATGCCCAACTCTCCGAAAACTATTACGAGCAAACATGCCCCAAATTCCACGAAACCGTCCACCATGTCGTCGTCGAAAAGCAAATAGCCACCCCCACTACTGCCGCTGCCGTCCTTCGCCTCTTCTTCCACGACTGCGTCCTCGAAGGCTGTGACGCCTCCCTCCTCATCGCCTCCAACTCCTTCAACAAGGCGGAGAGGGACGCCGAGATCAACGCCGCCATCCCCGGCGACGGCTTCGACATCATCACCCGTATCAAGACCGCCCTAGAGCTCCAGTGCCCCGGCATCGTCTCCTGCTCCGACATCCTCGCCGCCGCCGCCCGCAACCTTATCAACATGGTCGGGGGACCCCACTACACCCTCCTCTTCGGCCGCAAGGATGGCCTCGTCTCCCGGGCCGATCGCACGGAGGGCCACTACGCCAAGGCCAGCATGACCGTCTCCGAGCTCATCAACCTCTTCGCCTCCATCAACCTCTCTGTCCAGGATCTCGTCGCCCTAAGCGGGGCCCACACCATCGGCTTCTCCCACTGCAGCGAGTTCGCCAACCGCATCTTCAAATTCAGCCCGACGTCGGAGATTGACCCCGCCCTCAACCGCATCTACGCTGAGGGGCTGAGGAAGCTATGCGCCAATCACACGACCAACCCCGGGATGTCGGCGTTCAACGACGTCATGACCCCGGGGAAGTTCGACAACTTGTATTTCCAAAACTTGCAAAGGGGGCTAGGGTTACTGGCGACAGACCATGCCCTGGGGACGGATCCTCGTACGAAGCCGTTCGTGGATCTCTATGCCACCAACCAGGCAAAGTTTTTCGAGGATTTCGCCCAGGCAATACAGAGGGTCAGCTTGATGAACGTGAAAACTGGGAAGCAGGGCGAGGTCCGCCGCCGATGCGACGCCTTCAACGACCTCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

334

Amino Acids

36.63

Weight (kDa)

6.49

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 293 5.3e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 650, 750
AccB7I CCANNNNNTGG 1 cut(s) 829
AclWI GGATC 4 cut(s) 570, 833, 846, 870
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 2 cut(s) 116, 635
AcyI GRCGYC 5 cut(s) 228, 276, 647, 747, 978
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 7 cut(s) 305, 579, 580, 649, 726, 829, 835
AgsI TTSAA 4 cut(s) 259, 634, 742, 985
AjnI CCWGG 4 cut(s) 558, 828, 879, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 4 cut(s) 346, 523, 700, 927
AluI AGCT 4 cut(s) 346, 523, 700, 927
Alw21I GWGCWC 2 cut(s) 348, 525
Alw26I GTCTC 3 cut(s) 370, 469, 520
AlwI GGATC 4 cut(s) 570, 833, 846, 870
Ama87I CYCGRG 3 cut(s) 468, 725, 757
AoxI GGCC 6 cut(s) 445, 457, 471, 487, 501, 582
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 179, 609
ApoI RAATTY 2 cut(s) 116, 635
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 6 cut(s) 422, 471, 487, 582, 583, 961
AsuC2I CCSGG 8 cut(s) 300, 357, 469, 470, 726, 727, 758, 759
AsuHPI GGTGA 2 cut(s) 28, 313
AvaI CYCGRG 3 cut(s) 468, 725, 757
AvaII GGWCC 2 cut(s) 422, 961
BaeGI GKGCMC 2 cut(s) 356, 586
BamHI GGATCC 1 cut(s) 838
BanII GRGCYC 3 cut(s) 348, 525, 586
Bbv12I GWGCWC 2 cut(s) 348, 525
BbvCI CCTCAGC 2 cut(s) 684, 692
BbvI GCAGC 2 cut(s) 166, 621
BccI CCATC 4 cut(s) 302, 449, 551, 599
BceAI ACGGC 3 cut(s) 167, 322, 838
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 4 cut(s) 560, 830, 881, 908
BcnI CCSGG 8 cut(s) 300, 357, 469, 470, 726, 727, 758, 759
BcoDI GTCTC 3 cut(s) 370, 469, 520
BfaI CTAG 3 cut(s) 41, 341, 803
BfmI CTRYAG 1 cut(s) 607
BisI GCNGC 9 cut(s) 177, 180, 291, 387, 390, 393, 448, 610, 967
BlsI GCNGC 9 cut(s) 178, 181, 292, 388, 391, 394, 449, 611, 968
Bme18I GGWCC 2 cut(s) 422, 961
BmeT110I CYCGRG 3 cut(s) 468, 725, 757
BmgT120I GGNCC 6 cut(s) 422, 471, 487, 582, 583, 961
BmiI GGNNCC 5 cut(s) 423, 424, 583, 584, 840
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 4 cut(s) 369, 636, 684, 962
BmuI ACTGGG 1 cut(s) 954
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 3 cut(s) 575, 684, 692
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 8 cut(s) 300, 357, 469, 470, 726, 727, 758, 759
BsaHI GRCGYC 5 cut(s) 228, 276, 647, 747, 978
Bsc4I CCNNNNNNNGG 7 cut(s) 305, 579, 580, 649, 726, 829, 835
Bse1I ACTGG 3 cut(s) 349, 816, 949
BseBI CCWGG 4 cut(s) 560, 830, 881, 908
BseGI GGATG 4 cut(s) 294, 378, 460, 735
BseLI CCNNNNNNNGG 7 cut(s) 305, 579, 580, 649, 726, 829, 835
BseMII CTCAG 2 cut(s) 675, 683
BseNI ACTGG 3 cut(s) 349, 816, 949
BseRI GAGGAG 2 cut(s) 227, 428
BseSI GKGCMC 2 cut(s) 356, 586
BseX3I CGGCCG 1 cut(s) 445
BseXI GCAGC 2 cut(s) 166, 621
Bsh1285I CGRYCG 2 cut(s) 448, 478
BshFI GGCC 6 cut(s) 447, 459, 473, 489, 503, 584
BsiEI CGRYCG 2 cut(s) 448, 478
BsiHKAI GWGCWC 2 cut(s) 348, 525
BsiHKCI CYCGRG 3 cut(s) 468, 725, 757
BsiSI CCGG 5 cut(s) 300, 357, 469, 726, 758
BsiWI CGTACG 1 cut(s) 845
BslFI GGGAC 3 cut(s) 287, 435, 847
BslI CCNNNNNNNGG 7 cut(s) 305, 579, 580, 649, 726, 829, 835
BsmAI GTCTC 3 cut(s) 370, 469, 520
BsmBI CGTCTC 3 cut(s) 370, 469, 520
BsmFI GGGAC 3 cut(s) 287, 435, 847
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 6 cut(s) 447, 459, 473, 489, 503, 584
BsoBI CYCGRG 3 cut(s) 468, 725, 757
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 4 cut(s) 348, 356, 525, 586
Bsp143I GATC 5 cut(s) 282, 475, 562, 838, 862
BspANI GGCC 6 cut(s) 447, 459, 473, 489, 503, 584
BspCNI CTCAG 2 cut(s) 676, 684
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 5 cut(s) 423, 424, 583, 584, 840
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 4 cut(s) 570, 833, 846, 870
BsrI ACTGG 3 cut(s) 349, 816, 949
BssMI GATC 5 cut(s) 282, 475, 562, 838, 862
BssNI GRCGYC 5 cut(s) 228, 276, 647, 747, 978
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 4 cut(s) 560, 830, 881, 908
Bst4CI ACNGT 3 cut(s) 67, 130, 514
Bst6I CTCTTC 3 cut(s) 200, 446, 539
BstACI GRCGYC 5 cut(s) 228, 276, 647, 747, 978
BstC8I GCNNGC 2 cut(s) 397, 505
BstDEI CTNAG 3 cut(s) 575, 684, 692
BstF5I GGATG 4 cut(s) 294, 378, 460, 735
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 5 cut(s) 285, 478, 565, 841, 865
BstMAI GTCTC 3 cut(s) 370, 469, 520
BstMBI GATC 5 cut(s) 282, 475, 562, 838, 862
BstMCI CGRYCG 2 cut(s) 448, 478
BstMWI GCNNNNNNNGC 7 cut(s) 392, 456, 486, 697, 799, 963, 972
BstNI CCWGG 4 cut(s) 560, 830, 881, 908
BstNSI RCATGY 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 607
BstSLI GKGCMC 2 cut(s) 356, 586
BstV1I GCAGC 2 cut(s) 166, 621
BstX2I RGATCY 3 cut(s) 562, 838, 862
BstYI RGATCY 3 cut(s) 562, 838, 862
BstZI CGGCCG 1 cut(s) 445
BsuRI GGCC 6 cut(s) 447, 459, 473, 489, 503, 584
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 4 cut(s) 294, 378, 460, 735
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 3 cut(s) 72, 356, 604
Cac8I GCNNGC 2 cut(s) 397, 505
CciI TCATGA 1 cut(s) 750
CfoI GCGC 1 cut(s) 707
Cfr13I GGNCC 6 cut(s) 422, 471, 487, 582, 583, 961
Cfr9I CCCGGG 3 cut(s) 468, 725, 757
CseI GACGC 4 cut(s) 199, 236, 284, 986
Csp6I GTAC 1 cut(s) 846
CviAII CATG 8 cut(s) 17, 74, 108, 137, 412, 508, 751, 824
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 3 cut(s) 575, 684, 692
DpnI GATC 5 cut(s) 284, 477, 564, 840, 864
DpnII GATC 5 cut(s) 282, 475, 562, 838, 862
EaeI YGGCCR 1 cut(s) 445
EagI CGGCCG 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 200, 446, 539
EarI CTCTTC 3 cut(s) 200, 446, 539
EciI GGCGGA 2 cut(s) 281, 953
Ecl136II GAGCTC 2 cut(s) 346, 523
EclXI CGGCCG 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 3 cut(s) 348, 525, 586
Eco47I GGWCC 2 cut(s) 422, 961
Eco52I CGGCCG 1 cut(s) 445
Eco53kI GAGCTC 2 cut(s) 346, 523
Eco88I CYCGRG 3 cut(s) 468, 725, 757
EcoICRI GAGCTC 2 cut(s) 346, 523
EcoO109I RGGNCCY 2 cut(s) 422, 582
EcoRII CCWGG 4 cut(s) 558, 828, 879, 906
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 3 cut(s) 348, 525, 586
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 3 cut(s) 370, 469, 520
FaeI CATG 8 cut(s) 20, 77, 111, 140, 415, 511, 754, 827
FaqI GGGAC 3 cut(s) 287, 435, 847
FatI CATG 8 cut(s) 16, 73, 107, 136, 411, 507, 750, 823
FauI CCCGC 3 cut(s) 404, 572, 670
Fnu4HI GCNGC 9 cut(s) 177, 180, 291, 387, 390, 393, 448, 610, 967
FokI GGATG 4 cut(s) 281, 365, 467, 742
FriOI GRGCYC 3 cut(s) 348, 525, 586
Fsp4HI GCNGC 9 cut(s) 177, 180, 291, 387, 390, 393, 448, 610, 967
FspBI CTAG 3 cut(s) 41, 341, 803
GlaI GCGC 1 cut(s) 706
GluI GCNGC 9 cut(s) 177, 180, 291, 387, 390, 393, 448, 610, 967
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 6 cut(s) 447, 459, 473, 489, 503, 584
HapII CCGG 5 cut(s) 300, 357, 469, 726, 758
HgaI GACGC 4 cut(s) 199, 236, 284, 986
HhaI GCGC 1 cut(s) 707
Hin1I GRCGYC 5 cut(s) 228, 276, 647, 747, 978
Hin1II CATG 8 cut(s) 20, 77, 111, 140, 415, 511, 754, 827
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HpaII CCGG 5 cut(s) 300, 357, 469, 726, 758
HphI GGTGA 2 cut(s) 28, 313
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 4 cut(s) 88, 376, 520, 652
Hpy188III TCNNGA 3 cut(s) 331, 751, 994
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 8 cut(s) 146, 149, 308, 572, 649, 652, 749, 980
HpyAV CCTTC 5 cut(s) 41, 197, 212, 265, 991
HpyCH4III ACNGT 3 cut(s) 67, 130, 514
HpyCH4IV ACGT 3 cut(s) 647, 747, 936
HpyCH4V TGCA 2 cut(s) 609, 793
HpyF10VI GCNNNNNNNGC 7 cut(s) 392, 456, 486, 697, 799, 963, 972
HpyF3I CTNAG 3 cut(s) 575, 684, 692
HpySE526I ACGT 3 cut(s) 647, 747, 936
Hsp92I GRCGYC 5 cut(s) 228, 276, 647, 747, 978
Hsp92II CATG 8 cut(s) 20, 77, 111, 140, 415, 511, 754, 827
HspAI GCGC 1 cut(s) 705
KflI GGGWCCC 1 cut(s) 422
Kzo9I GATC 5 cut(s) 282, 475, 562, 838, 862
LmnI GCTCC 2 cut(s) 351, 377
Lsp1109I GCAGC 2 cut(s) 166, 621
LweI GCATC 4 cut(s) 369, 636, 684, 962
MaeI CTAG 3 cut(s) 41, 341, 803
MaeII ACGT 3 cut(s) 647, 747, 936
MaeIII GTNAC 3 cut(s) 67, 224, 807
MalI GATC 5 cut(s) 284, 477, 564, 840, 864
MboI GATC 5 cut(s) 282, 475, 562, 838, 862
MboII GAAGA 5 cut(s) 187, 190, 433, 526, 622
MflI RGATCY 3 cut(s) 562, 838, 862
MhlI GDGCHC 4 cut(s) 348, 356, 525, 586
MluCI AATT 2 cut(s) 116, 635
MmeI TCCRAC 3 cut(s) 273, 399, 630
MroXI GAANNNNTTC 1 cut(s) 854
MslI CAYNNNNRTG 2 cut(s) 15, 41
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 5 cut(s) 300, 357, 469, 726, 758
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 4 cut(s) 560, 830, 881, 908
MwoI GCNNNNNNNGC 7 cut(s) 392, 456, 486, 697, 799, 963, 972
NciI CCSGG 8 cut(s) 300, 357, 469, 470, 726, 727, 758, 759
NdeII GATC 5 cut(s) 282, 475, 562, 838, 862
NlaIII CATG 8 cut(s) 20, 77, 111, 140, 415, 511, 754, 827
NlaIV GGNNCC 5 cut(s) 423, 424, 583, 584, 840
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 67, 224
NspI RCATGY 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 41
PagI TCATGA 1 cut(s) 750
PasI CCCWGGG 1 cut(s) 829
PcsI WCGNNNNNNNCGW 1 cut(s) 984
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 854
Pfl23II CGTACG 1 cut(s) 845
PflFI GACNNNGTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 1 cut(s) 558
PkrI GCNGC 9 cut(s) 178, 181, 292, 388, 391, 394, 449, 611, 968
Ple19I CGATCG 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 422
Psp124BI GAGCTC 2 cut(s) 348, 525
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 4 cut(s) 558, 828, 879, 906
PspGI CCWGG 4 cut(s) 558, 828, 879, 906
PspLI CGTACG 1 cut(s) 845
PspN4I GGNNCC 5 cut(s) 423, 424, 583, 584, 840
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 6 cut(s) 422, 471, 487, 582, 583, 961
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 3 cut(s) 562, 838, 862
PsyI GACNNNGTC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 478
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 2 cut(s) 15, 41
SacI GAGCTC 2 cut(s) 348, 525
SatI GCNGC 9 cut(s) 177, 180, 291, 387, 390, 393, 448, 610, 967
Sau3AI GATC 5 cut(s) 282, 475, 562, 838, 862
Sau96I GGNCC 6 cut(s) 422, 471, 487, 582, 583, 961
SduI GDGCHC 4 cut(s) 348, 356, 525, 586
SfaNI GCATC 4 cut(s) 369, 636, 684, 962
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 2 cut(s) 422, 961
SmaI CCCGGG 3 cut(s) 470, 727, 759
SmiMI CAYNNNNRTG 2 cut(s) 15, 41
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 2 cut(s) 116, 635
SspMI CTAG 3 cut(s) 41, 341, 803
SstI GAGCTC 2 cut(s) 348, 525
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 3 cut(s) 67, 130, 514
TaiI ACGT 3 cut(s) 650, 750, 939
TaqI TCGA 5 cut(s) 147, 216, 312, 768, 894
TasI AATT 2 cut(s) 116, 635
TauI GCSGC 7 cut(s) 179, 293, 389, 392, 395, 450, 969
TscAI CASTG 3 cut(s) 72, 356, 611
TseFI GTSAC 2 cut(s) 67, 224
TseI GCWGC 2 cut(s) 179, 609
Tsp45I GTSAC 2 cut(s) 67, 224
TspDTI ATGAA 1 cut(s) 947
TspGWI ACGGA 2 cut(s) 497, 851
TspMI CCCGGG 3 cut(s) 468, 725, 757
TspRI CASTG 3 cut(s) 72, 356, 611
Tth111I GACNNNGTC 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 422, 961
XapI RAATTY 2 cut(s) 116, 635
XceI RCATGY 1 cut(s) 111
XmaI CCCGGG 3 cut(s) 468, 725, 757
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 3 cut(s) 41, 341, 803
ZraI GACGTC 2 cut(s) 648, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.