pycom13g07440

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014949
Physical Location & Seq
Reverse (-)
4951499 .. 4952089
591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07440.1

Sequence Viewer

Length: 591 bp
ATGGTCGGGGGACCCCACTACACCCTCCTATTCGGCCGCAAGGACGGCCTCATCTCCCGGGCCGATCGCACGGAGGGCCACTACGCCAAGGCCAGCATGACCGTCTCCGAGCTCATCAACCTCTTCGCCTCCATCAACCTCTCTGTCCAGGACCTCGTCGCCCTAAGCGGGGCCCACACCATCGGCTTCTCCCACTGCAGCGAGTTCGCCAACCGCATCTTCAAATTCAGTCCGACGTCGGAGATTGACCCCGCCCTCAACCGCAACTACGCGGAGGGGCTGAGGAAGCTATGCGCCAATCACACGACCAACCCCGGGATGTCGGCGTTCAACGACGTCATGACCCCGGGGAAGTTCGACAACTTGTATTTCCAAAACTTGCAAAGGGGGCTAGGGTTACTGGCGACAGACCATGCCCTGGGGACGGATCCTCGTACGAAGCCGTTCGTGGATCTCTATGCCACCAACCAGGCAAAGTTTTTCGAGGATTTCGTCCAGGCAATACAAAGGGTCAGCTTGATGAACGTGAAAACTGGGAACCAGGGCGAGGTCCGCCGCCGATGCGACGCCTTCAACAACCTCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

197

Amino Acids

21.74

Weight (kDa)

8.81

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 156 7.8e-41 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 239, 339
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 272
AciI CCGC 8 cut(s) 37, 168, 214, 252, 262, 272, 553, 556
AclWI GGATC 3 cut(s) 422, 435, 459
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 3 cut(s) 236, 336, 567
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 6 cut(s) 168, 169, 315, 418, 424, 547
AgsI TTSAA 3 cut(s) 223, 331, 574
AjnI CCWGG 5 cut(s) 147, 417, 468, 495, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 112, 289, 516
AluI AGCT 3 cut(s) 112, 289, 516
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 3 cut(s) 422, 435, 459
Ama87I CYCGRG 3 cut(s) 57, 314, 346
AoxI GGCC 6 cut(s) 34, 46, 60, 76, 90, 171
ApaI GGGCCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 7 cut(s) 11, 60, 76, 151, 171, 172, 550
AsuC2I CCSGG 6 cut(s) 58, 59, 315, 316, 347, 348
AvaI CYCGRG 3 cut(s) 57, 314, 346
AvaII GGWCC 3 cut(s) 11, 151, 550
BaeGI GKGCMC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 427
BanII GRGCYC 2 cut(s) 114, 175
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 140, 188
BceAI ACGGC 2 cut(s) 61, 427
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 5 cut(s) 149, 419, 470, 497, 542
BcnI CCSGG 6 cut(s) 58, 59, 315, 316, 347, 348
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 3 cut(s) 37, 199, 556
BlsI GCNGC 3 cut(s) 38, 200, 557
Bme18I GGWCC 3 cut(s) 11, 151, 550
BmeT110I CYCGRG 3 cut(s) 57, 314, 346
BmgT120I GGNCC 7 cut(s) 11, 60, 76, 151, 171, 172, 550
BmiI GGNNCC 6 cut(s) 12, 13, 172, 173, 429, 539
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 225, 551
BmuI ACTGGG 1 cut(s) 543
Bpu10I CCTNAGC 2 cut(s) 164, 281
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 6 cut(s) 58, 59, 315, 316, 347, 348
BsaHI GRCGYC 3 cut(s) 236, 336, 567
Bsc4I CCNNNNNNNGG 6 cut(s) 168, 169, 315, 418, 424, 547
Bse1I ACTGG 2 cut(s) 405, 538
BseBI CCWGG 5 cut(s) 149, 419, 470, 497, 542
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 6 cut(s) 168, 169, 315, 418, 424, 547
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 405, 538
BseSI GKGCMC 1 cut(s) 175
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 2 cut(s) 37, 67
BshFI GGCC 6 cut(s) 36, 48, 62, 78, 92, 173
BsiEI CGRYCG 2 cut(s) 37, 67
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 3 cut(s) 57, 314, 346
BsiSI CCGG 3 cut(s) 58, 315, 347
BsiWI CGTACG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 24, 436
BslI CCNNNNNNNGG 6 cut(s) 168, 169, 315, 418, 424, 547
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 24, 436
BsnI GGCC 6 cut(s) 36, 48, 62, 78, 92, 173
BsoBI CYCGRG 3 cut(s) 57, 314, 346
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 114, 175
Bsp143I GATC 3 cut(s) 64, 427, 451
BspACI CCGC 8 cut(s) 37, 168, 214, 252, 262, 272, 553, 556
BspANI GGCC 6 cut(s) 36, 48, 62, 78, 92, 173
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 6 cut(s) 12, 13, 172, 173, 429, 539
BspMAI CTGCAG 1 cut(s) 200
BspPI GGATC 3 cut(s) 422, 435, 459
BsrI ACTGG 2 cut(s) 405, 538
BssMI GATC 3 cut(s) 64, 427, 451
BssNI GRCGYC 3 cut(s) 236, 336, 567
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 5 cut(s) 149, 419, 470, 497, 542
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 3 cut(s) 236, 336, 567
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 164, 281
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 67, 430, 454
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 64, 427, 451
BstMCI CGRYCG 2 cut(s) 37, 67
BstMWI GCNNNNNNNGC 6 cut(s) 45, 75, 286, 388, 552, 561
BstNI CCWGG 5 cut(s) 149, 419, 470, 497, 542
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 427, 451
BstYI RGATCY 2 cut(s) 427, 451
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 6 cut(s) 36, 48, 62, 78, 92, 173
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 94
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 7 cut(s) 11, 60, 76, 151, 171, 172, 550
Cfr9I CCCGGG 3 cut(s) 57, 314, 346
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 97, 340, 413
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 164, 281
DpnI GATC 3 cut(s) 66, 429, 453
DpnII GATC 3 cut(s) 64, 427, 451
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 542
Ecl136II GAGCTC 1 cut(s) 112
EclXI CGGCCG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 114, 175
Eco47I GGWCC 3 cut(s) 11, 151, 550
Eco52I CGGCCG 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 3 cut(s) 57, 314, 346
EcoICRI GAGCTC 1 cut(s) 112
EcoO109I RGGNCCY 3 cut(s) 11, 151, 171
EcoRII CCWGG 5 cut(s) 147, 417, 468, 495, 540
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 114, 175
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 3 cut(s) 100, 343, 416
FaiI YATR 5 cut(s) 98, 292, 341, 414, 459
FaqI GGGAC 2 cut(s) 24, 436
FatI CATG 3 cut(s) 96, 339, 412
FauI CCCGC 2 cut(s) 161, 259
Fnu4HI GCNGC 3 cut(s) 37, 199, 556
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 2 cut(s) 114, 175
Fsp4HI GCNGC 3 cut(s) 37, 199, 556
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 295
GluI GCNGC 3 cut(s) 37, 199, 556
HaeIII GGCC 6 cut(s) 36, 48, 62, 78, 92, 173
HapII CCGG 3 cut(s) 58, 315, 347
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 296
Hin1I GRCGYC 3 cut(s) 236, 336, 567
Hin1II CATG 3 cut(s) 100, 343, 416
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HpaII CCGG 3 cut(s) 58, 315, 347
Hpy188I TCNGA 3 cut(s) 109, 234, 241
Hpy188III TCNNGA 2 cut(s) 340, 583
Hpy99I CGWCG 5 cut(s) 161, 238, 241, 338, 569
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 3 cut(s) 236, 336, 525
HpyCH4V TGCA 2 cut(s) 198, 382
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 75, 286, 388, 552, 561
HpyF3I CTNAG 2 cut(s) 164, 281
HpySE526I ACGT 3 cut(s) 236, 336, 525
Hsp92I GRCGYC 3 cut(s) 236, 336, 567
Hsp92II CATG 3 cut(s) 100, 343, 416
HspAI GCGC 1 cut(s) 294
KflI GGGWCCC 1 cut(s) 11
Kzo9I GATC 3 cut(s) 64, 427, 451
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 2 cut(s) 225, 551
MaeI CTAG 1 cut(s) 392
MaeII ACGT 3 cut(s) 236, 336, 525
MaeIII GTNAC 1 cut(s) 396
MalI GATC 3 cut(s) 66, 429, 453
MboI GATC 3 cut(s) 64, 427, 451
MboII GAAGA 2 cut(s) 115, 211
MflI RGATCY 2 cut(s) 427, 451
MhlI GDGCHC 2 cut(s) 114, 175
MluCI AATT 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 219, 257
MroXI GAANNNNTTC 1 cut(s) 443
MspI CCGG 3 cut(s) 58, 315, 347
MvaI CCWGG 5 cut(s) 149, 419, 470, 497, 542
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 6 cut(s) 45, 75, 286, 388, 552, 561
NciI CCSGG 6 cut(s) 58, 59, 315, 316, 347, 348
NdeII GATC 3 cut(s) 64, 427, 451
NlaIII CATG 3 cut(s) 100, 343, 416
NlaIV GGNNCC 6 cut(s) 12, 13, 172, 173, 429, 539
PagI TCATGA 1 cut(s) 339
PasI CCCWGGG 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 443
Pfl23II CGTACG 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 3 cut(s) 38, 200, 557
Ple19I CGATCG 1 cut(s) 67
PpuMI RGGWCCY 2 cut(s) 11, 151
Psp124BI GAGCTC 1 cut(s) 114
Psp5II RGGWCCY 2 cut(s) 11, 151
Psp6I CCWGG 5 cut(s) 147, 417, 468, 495, 540
PspGI CCWGG 5 cut(s) 147, 417, 468, 495, 540
PspLI CGTACG 1 cut(s) 434
PspN4I GGNNCC 6 cut(s) 12, 13, 172, 173, 429, 539
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 7 cut(s) 11, 60, 76, 151, 171, 172, 550
PspPPI RGGWCCY 2 cut(s) 11, 151
PstI CTGCAG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 427, 451
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 67
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 3 cut(s) 37, 199, 556
Sau3AI GATC 3 cut(s) 64, 427, 451
Sau96I GGNCC 7 cut(s) 11, 60, 76, 151, 171, 172, 550
SduI GDGCHC 2 cut(s) 114, 175
SfaNI GCATC 2 cut(s) 225, 551
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 3 cut(s) 11, 151, 550
SmaI CCCGGG 3 cut(s) 59, 316, 348
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 1 cut(s) 224
SsiI CCGC 8 cut(s) 37, 168, 214, 252, 262, 272, 553, 556
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 1 cut(s) 114
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 3 cut(s) 239, 339, 528
TaqI TCGA 2 cut(s) 357, 483
TasI AATT 1 cut(s) 224
TauI GCSGC 2 cut(s) 39, 558
TscAI CASTG 1 cut(s) 200
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 2 cut(s) 86, 440
TspMI CCCGGG 3 cut(s) 57, 314, 346
TspRI CASTG 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 3 cut(s) 11, 151, 550
XapI RAATTY 1 cut(s) 224
XmaI CCCGGG 3 cut(s) 57, 314, 346
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 1 cut(s) 392
ZraI GACGTC 2 cut(s) 237, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.