Rh4AG415000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014949
Physical Location & Seq
Forward (+)
71375761 .. 71376351
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG415000.1

Sequence Viewer

Length: 591 bp
ATGGTCGGCGGGCCCTACTACCCCGTCCGCTTCGGCCGCAAAGACGGCTTCGTCTCAAGAGCCGAAGCCGTCGAAGGTAACCTCGCCAGGGCCAACATGTCCTTGTCCCAGATCATCAACCTCTTCGCCGGTCGGAGACTCAACGTCCAGGAAATGGTCGCCCTCGCTGGGTCCCACACCATCGGATTCTCCCACTGCAAGGAGTTCAGTAATAGGCTCTTCAAGTTCAGCCCTACCTCCGAGTACGACCCGTCGTACAACCCCCAGTTCGCCGAGGGGCTCAGGAAGCTCTGCGCCAACTACACCCAGGACCCGCAGATGTCGGCCTTCAACGACGTCATGACACCTGGCAAGTTCGACAACATGTACTTTAGAAACTTGCAGAGGGGGCTAGGGTTGTTGCCTTCCGACCAGGCCATGGCGGTGGACAGGAGGACGAGGCCGCTCGTCGACCTCTACGCGGCGAACCAGACCAGGTGGTTCGACGATTTTTCTCGCGCTATGGAGAAGGTTAGCCTTTATAATGTTAAGATGGGAAGGAAGGGAGAGGTCCGGCGGAGATGTGATGCCTTCAACAATCTCAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

196

Amino Acids

22.37

Weight (kDa)

9.67

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 156 1.3e-43 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 50
AatII GACGTC 1 cut(s) 339
AccB7I CCANNNNNTGG 2 cut(s) 154, 418
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 450
AccII CGCG 2 cut(s) 461, 498
AciI CCGC 8 cut(s) 9, 28, 37, 314, 422, 443, 461, 556
AcoI YGGCCR 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 3 cut(s) 245, 257, 368
AfiI CCNNNNNNNGG 6 cut(s) 88, 154, 168, 199, 418, 460
AflIII ACRYGT 2 cut(s) 96, 363
AgsI TTSAA 3 cut(s) 223, 331, 574
AhdI GACNNNNNGTC 1 cut(s) 143
AjnI CCWGG 6 cut(s) 86, 147, 306, 346, 411, 473
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 2 cut(s) 58, 130
AoxI GGCC 6 cut(s) 11, 34, 90, 324, 414, 440
ApaI GGGCCC 1 cut(s) 15
AspLEI GCGC 2 cut(s) 296, 500
AspS9I GGNCC 6 cut(s) 11, 12, 90, 171, 310, 550
AvaII GGWCC 3 cut(s) 171, 310, 550
BaeGI GKGCMC 1 cut(s) 15
BanII GRGCYC 2 cut(s) 15, 282
BccI CCATC 2 cut(s) 188, 526
BceAI ACGGC 2 cut(s) 53, 61
BciT130I CCWGG 6 cut(s) 88, 149, 308, 348, 413, 475
BcoDI GTCTC 2 cut(s) 58, 130
BfaI CTAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 37, 443, 462
BlsI GCNGC 3 cut(s) 38, 444, 463
Bme1390I CCNGG 6 cut(s) 88, 149, 308, 348, 413, 475
Bme18I GGWCC 3 cut(s) 171, 310, 550
BmeRI GACNNNNNGTC 1 cut(s) 143
BmgT120I GGNCC 6 cut(s) 11, 12, 90, 171, 310, 550
BmiI GGNNCC 4 cut(s) 13, 172, 173, 312
BmrFI CCNGG 6 cut(s) 88, 149, 308, 348, 413, 475
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 556
BmuI ACTGGG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 87, 273, 306, 417
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 154, 168, 199, 418, 460
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 6 cut(s) 88, 149, 308, 348, 413, 475
BseDI CCNNGG 4 cut(s) 87, 273, 306, 417
BseLI CCNNNNNNNGG 6 cut(s) 88, 154, 168, 199, 418, 460
BseMII CTCAG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 15
BseX3I CGGCCG 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 461, 498
Bsh1285I CGRYCG 2 cut(s) 37, 133
BshFI GGCC 6 cut(s) 13, 36, 92, 326, 416, 442
BsiEI CGRYCG 2 cut(s) 37, 133
BsiSI CCGG 2 cut(s) 129, 553
BslFI GGGAC 2 cut(s) 91, 157
BslI CCNNNNNNNGG 6 cut(s) 88, 154, 168, 199, 418, 460
BsmAI GTCTC 2 cut(s) 58, 130
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 2 cut(s) 91, 157
BsnI GGCC 6 cut(s) 13, 36, 92, 326, 416, 442
Bsp120I GGGCCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 15, 282
Bsp143I GATC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 8 cut(s) 9, 28, 37, 314, 422, 443, 461, 556
BspANI GGCC 6 cut(s) 13, 36, 92, 326, 416, 442
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 2 cut(s) 461, 498
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 4 cut(s) 13, 172, 173, 312
BspQI GCTCTTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 87, 273, 306, 417
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 6 cut(s) 88, 149, 308, 348, 413, 475
Bst6I CTCTTC 2 cut(s) 128, 224
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 417
BstEII GGTNACC 1 cut(s) 77
BstFNI CGCG 2 cut(s) 461, 498
BstHHI GCGC 2 cut(s) 296, 500
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 58, 130
BstMBI GATC 1 cut(s) 111
BstMCI CGRYCG 2 cut(s) 37, 133
BstMWI GCNNNNNNNGC 4 cut(s) 36, 45, 286, 388
BstNI CCWGG 6 cut(s) 88, 149, 308, 348, 413, 475
BstNSI RCATGY 2 cut(s) 100, 367
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 6 cut(s) 86, 147, 306, 346, 411, 473
BstSLI GKGCMC 1 cut(s) 15
BstUI CGCG 2 cut(s) 461, 498
BstXI CCANNNNNNTGG 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 6 cut(s) 13, 36, 92, 326, 416, 442
BtgI CCRYGG 1 cut(s) 417
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 1 cut(s) 339
CfoI GCGC 2 cut(s) 296, 500
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 6 cut(s) 11, 12, 90, 171, 310, 550
CsiI ACCWGGT 1 cut(s) 473
Csp6I GTAC 3 cut(s) 244, 256, 367
CviAII CATG 4 cut(s) 97, 340, 364, 418
CviQI GTAC 3 cut(s) 244, 256, 367
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DrdI GACNNNNNNGTC 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 128, 224
Eam1105I GACNNNNNGTC 1 cut(s) 143
EarI CTCTTC 2 cut(s) 128, 224
EciI GGCGGA 1 cut(s) 571
EclXI CGGCCG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 2 cut(s) 15, 282
Eco47I GGWCC 3 cut(s) 171, 310, 550
Eco52I CGGCCG 1 cut(s) 34
Eco91I GGTNACC 1 cut(s) 77
EcoO109I RGGNCCY 3 cut(s) 12, 171, 310
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 6 cut(s) 86, 147, 306, 346, 411, 473
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 2 cut(s) 15, 282
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 4 cut(s) 100, 343, 367, 421
FaiI YATR 7 cut(s) 98, 341, 365, 419, 503, 522, 589
FaqI GGGAC 2 cut(s) 91, 157
FatI CATG 4 cut(s) 96, 339, 363, 417
FauI CCCGC 2 cut(s) 2, 321
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 37, 443, 462
FriOI GRGCYC 2 cut(s) 15, 282
Fsp4HI GCNGC 3 cut(s) 37, 443, 462
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 295, 499
GluI GCNGC 3 cut(s) 37, 443, 462
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 6 cut(s) 13, 36, 92, 326, 416, 442
HapII CCGG 2 cut(s) 129, 553
HhaI GCGC 2 cut(s) 296, 500
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 4 cut(s) 100, 343, 367, 421
Hin6I GCGC 2 cut(s) 294, 498
HinP1I GCGC 2 cut(s) 294, 498
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 2 cut(s) 138, 186
HpaII CCGG 2 cut(s) 129, 553
Hpy166II GTNNAC 2 cut(s) 427, 451
Hpy188I TCNGA 4 cut(s) 135, 185, 241, 409
Hpy188III TCNNGA 3 cut(s) 57, 283, 340
Hpy8I GTNNAC 2 cut(s) 427, 451
Hpy99I CGWCG 5 cut(s) 74, 256, 338, 452, 488
HpyAV CCTTC 7 cut(s) 68, 337, 414, 502, 531, 535, 580
HpyCH4IV ACGT 2 cut(s) 144, 336
HpyCH4V TGCA 2 cut(s) 198, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 45, 286, 388
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 144, 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 4 cut(s) 100, 343, 367, 421
HspAI GCGC 2 cut(s) 294, 498
KflI GGGWCCC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 111
LguI GCTCTTC 1 cut(s) 224
LweI GCATC 1 cut(s) 556
MabI ACCWGGT 1 cut(s) 473
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 144, 336
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 113
MbiI CCGCTC 1 cut(s) 445
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 115, 211
MhlI GDGCHC 2 cut(s) 15, 282
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 113, 432
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 2 cut(s) 129, 553
MspR9I CCNGG 6 cut(s) 88, 149, 308, 348, 413, 475
MvaI CCWGG 6 cut(s) 88, 149, 308, 348, 413, 475
MvnI CGCG 2 cut(s) 461, 498
MwoI GCNNNNNNNGC 4 cut(s) 36, 45, 286, 388
NcoI CCATGG 1 cut(s) 417
NdeII GATC 1 cut(s) 111
NlaIII CATG 4 cut(s) 100, 343, 367, 421
NlaIV GGNNCC 4 cut(s) 13, 172, 173, 312
NmeAIII GCCGAG 1 cut(s) 298
NspI RCATGY 2 cut(s) 100, 367
PagI TCATGA 1 cut(s) 339
PciI ACATGT 2 cut(s) 96, 363
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 2 cut(s) 154, 418
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 3 cut(s) 38, 444, 463
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PpuMI RGGWCCY 2 cut(s) 171, 310
PscI ACATGT 2 cut(s) 96, 363
PsiI TTATAA 1 cut(s) 522
Psp5II RGGWCCY 2 cut(s) 171, 310
Psp6I CCWGG 6 cut(s) 86, 147, 306, 346, 411, 473
PspEI GGTNACC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 6 cut(s) 86, 147, 306, 346, 411, 473
PspN4I GGNNCC 4 cut(s) 13, 172, 173, 312
PspOMI GGGCCC 1 cut(s) 11
PspPI GGNCC 6 cut(s) 11, 12, 90, 171, 310, 550
PspPPI RGGWCCY 2 cut(s) 171, 310
RsaI GTAC 3 cut(s) 245, 257, 368
RsaNI GTAC 3 cut(s) 244, 256, 367
RseI CAYNNNNRTG 1 cut(s) 422
SalI GTCGAC 1 cut(s) 449
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 3 cut(s) 37, 443, 462
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 6 cut(s) 11, 12, 90, 171, 310, 550
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 6 cut(s) 88, 149, 308, 348, 413, 475
SduI GDGCHC 2 cut(s) 15, 282
SexAI ACCWGGT 1 cut(s) 473
SfaNI GCATC 1 cut(s) 556
SinI GGWCC 3 cut(s) 171, 310, 550
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SsiI CCGC 8 cut(s) 9, 28, 37, 314, 422, 443, 461, 556
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 6 cut(s) 86, 147, 306, 346, 411, 473
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 2 cut(s) 147, 339
TaqI TCGA 4 cut(s) 72, 357, 450, 483
TatI WGTACW 1 cut(s) 366
TauI GCSGC 3 cut(s) 39, 445, 464
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 200
TspRI CASTG 1 cut(s) 200
Van91I CCANNNNNTGG 2 cut(s) 154, 418
VpaK11BI GGWCC 3 cut(s) 171, 310, 550
XceI RCATGY 2 cut(s) 100, 367
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 392
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.