RLG00000005810

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
1963028 .. 1964014
987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005810

Sequence Viewer

Length: 987 bp
ATGGCATTTCATTCCCTCCTCCTATTCTCTCTTATATTCTCCTTCCTAACCCAAACACACTCCCGCCTCACCCCAAACTACTACGACAAAACATGTCCCGACTTCGAAAAAATCGTCCGTCAAGTCGTCACCGACAAGCAGCTCGCCTCCCCCACCACCGCCGCCGCCACCCTCCGCCTCTTCTTCCACGACTGCATGGTCGAGGGCTGCGACGCCTCCATTCTCATCGCCTCCAACGCCTTCAACAAAGCCGAGCGCGACTCCGACATCAACCTCTCCCTCGCCGGCGACGGCTTCGACGTCATCACCCGTATCAAGACCAACCTCGAGCTCACGTGCCCCGGCATCGTTTCCTGCGCCGACATCCTCGTCGCCGCCACCCGCAACCTCATCAACATGGTCGGCGGGCCCTACTACCCCGTCCGCTTCGGCCGCAAAGACGGCTTCGTCTCAAGAGCCGAAGCCGTCGAAGGTAACCTCGCCAGGGCCAACATGTCCTTGTCCCAGATCATCAACCTCTTCGCCGGTCGGAGACTCAACGTCCAGGAAATGGTCGCCCTCGCTGGGTCCCACACCATCGGATTCTCCCACTGCAAGGAGTTCAGTAATAGGCTCTTCAAGTTCAGCCCTACGTCCGACCACGACCCGTCGTACAACCCCCAGTTCGCCGAGGGGCTCAGGAAGCTCTGCGCCAACTACACCCAGGACCCGCAGATGTCGGCCTTCAACGACGTCATGACACCTGGCAAGTTCGACAACATGTACTTTAGAAACTTGCAGAGGGGGCTAGGGTTGCTGCCTTCCGACCAGGCCATGGCGGTGGACAGGAGGACGAGGCCGCTCGTCGACCTCTACGCGGCGAACCAGACCAGGTGGTTCGACGATTTTTCTCGCGCTATGGAGAAGGTTAGCCTTTATAATGTTAAGACGGGAAGGAAGGGAGAGGTCCGGCGGAGATGTGATGCCTTCAACTATCTCAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

329

Amino Acids

36.87

Weight (kDa)

8.86

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 39 - 288 6.1e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014949)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AasI GACNNNNNNGTC 3 cut(s) 197, 368, 446
AatII GACGTC 2 cut(s) 303, 735
AccB7I CCANNNNNTGG 2 cut(s) 550, 814
AccBSI CCGCTC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 846
AccII CGCG 3 cut(s) 258, 857, 894
AcoI YGGCCR 1 cut(s) 430
AcvI CACGTG 1 cut(s) 336
AcyI GRCGYC 3 cut(s) 213, 300, 732
AfaI GTAC 2 cut(s) 653, 764
AfiI CCNNNNNNNGG 6 cut(s) 484, 550, 564, 595, 814, 856
AflIII ACRYGT 3 cut(s) 92, 492, 759
AgsI TTSAA 4 cut(s) 244, 619, 727, 970
AhdI GACNNNNNGTC 1 cut(s) 539
AjnI CCWGG 6 cut(s) 482, 543, 702, 742, 807, 869
AluBI AGCT 3 cut(s) 142, 331, 685
AluI AGCT 3 cut(s) 142, 331, 685
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 454, 526
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 6 cut(s) 407, 430, 486, 720, 810, 836
ApaI GGGCCC 1 cut(s) 411
ApeKI GCWGC 3 cut(s) 139, 207, 796
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspLEI GCGC 4 cut(s) 258, 359, 692, 896
AspS9I GGNCC 6 cut(s) 407, 408, 486, 567, 706, 946
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 61, 121, 298
AsuII TTCGAA 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 3 cut(s) 567, 706, 946
BaeGI GKGCMC 2 cut(s) 341, 411
BanII GRGCYC 3 cut(s) 333, 411, 678
BbrPI CACGTG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 151, 194, 783
BccI CCATC 1 cut(s) 584
BceAI ACGGC 3 cut(s) 307, 449, 457
BciT130I CCWGG 6 cut(s) 484, 545, 704, 744, 809, 871
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 454, 526
BfaI CTAG 1 cut(s) 788
BisI GCNGC 9 cut(s) 140, 162, 165, 208, 375, 433, 797, 839, 858
BlsI GCNGC 9 cut(s) 141, 163, 166, 209, 376, 434, 798, 840, 859
Bme1390I CCNGG 7 cut(s) 342, 484, 545, 704, 744, 809, 871
Bme18I GGWCC 3 cut(s) 567, 706, 946
BmeRI GACNNNNNGTC 1 cut(s) 539
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 6 cut(s) 407, 408, 486, 567, 706, 946
BmiI GGNNCC 4 cut(s) 409, 568, 569, 708
BmrFI CCNGG 7 cut(s) 342, 484, 545, 704, 744, 809, 871
BmrI ACTGGG 1 cut(s) 655
BmsI GCATC 2 cut(s) 354, 952
BmuI ACTGGG 1 cut(s) 655
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 677
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 336
BsaHI GRCGYC 3 cut(s) 213, 300, 732
BsaJI CCNNGG 5 cut(s) 340, 483, 669, 702, 813
Bsc4I CCNNNNNNNGG 6 cut(s) 484, 550, 564, 595, 814, 856
Bse118I RCCGGY 2 cut(s) 284, 524
Bse1I ACTGG 1 cut(s) 661
BseBI CCWGG 6 cut(s) 484, 545, 704, 744, 809, 871
BseDI CCNNGG 5 cut(s) 340, 483, 669, 702, 813
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 6 cut(s) 484, 550, 564, 595, 814, 856
BseMII CTCAG 1 cut(s) 691
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 8
BseSI GKGCMC 2 cut(s) 341, 411
BseX3I CGGCCG 1 cut(s) 430
BseXI GCAGC 3 cut(s) 151, 194, 783
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 3 cut(s) 258, 857, 894
Bsh1285I CGRYCG 2 cut(s) 433, 529
BshFI GGCC 6 cut(s) 409, 432, 488, 722, 812, 838
BsiEI CGRYCG 2 cut(s) 433, 529
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 4 cut(s) 285, 342, 525, 949
BslFI GGGAC 3 cut(s) 81, 487, 553
BslI CCNNNNNNNGG 6 cut(s) 484, 550, 564, 595, 814, 856
BsmAI GTCTC 2 cut(s) 454, 526
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 3 cut(s) 81, 487, 553
BsnI GGCC 6 cut(s) 409, 432, 488, 722, 812, 838
BsoBI CYCGRG 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 407
Bsp1286I GDGCHC 4 cut(s) 333, 341, 411, 678
Bsp143I GATC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 813
BspANI GGCC 6 cut(s) 409, 432, 488, 722, 812, 838
BspCNI CTCAG 1 cut(s) 690
BspFNI CGCG 3 cut(s) 258, 857, 894
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 4 cut(s) 409, 568, 569, 708
BspQI GCTCTTC 1 cut(s) 620
BspT104I TTCGAA 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 841
BsrFI RCCGGY 2 cut(s) 284, 524
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 2 cut(s) 284, 524
BssECI CCNNGG 5 cut(s) 340, 483, 669, 702, 813
BssMI GATC 1 cut(s) 507
BssNI GRCGYC 3 cut(s) 213, 300, 732
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 6 cut(s) 484, 545, 704, 744, 809, 871
Bst6I CTCTTC 3 cut(s) 185, 524, 620
BstACI GRCGYC 3 cut(s) 213, 300, 732
BstBAI YACGTR 1 cut(s) 336
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 144, 286, 407
BstDEI CTNAG 1 cut(s) 677
BstDSI CCRYGG 1 cut(s) 813
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 3 cut(s) 258, 857, 894
BstHHI GCGC 4 cut(s) 258, 359, 692, 896
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 2 cut(s) 454, 526
BstMBI GATC 1 cut(s) 507
BstMCI CGRYCG 2 cut(s) 433, 529
BstMWI GCNNNNNNNGC 6 cut(s) 236, 432, 441, 682, 784, 793
BstNI CCWGG 6 cut(s) 484, 545, 704, 744, 809, 871
BstNSI RCATGY 3 cut(s) 96, 496, 763
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 7 cut(s) 340, 482, 543, 702, 742, 807, 869
BstSLI GKGCMC 2 cut(s) 341, 411
BstUI CGCG 3 cut(s) 258, 857, 894
BstV1I GCAGC 3 cut(s) 151, 194, 783
BstXI CCANNNNNNTGG 1 cut(s) 820
BstZI CGGCCG 1 cut(s) 430
BsuRI GGCC 6 cut(s) 409, 432, 488, 722, 812, 838
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 3 cut(s) 144, 286, 407
CciI TCATGA 1 cut(s) 735
CfoI GCGC 4 cut(s) 258, 359, 692, 896
Cfr10I RCCGGY 2 cut(s) 284, 524
Cfr13I GGNCC 6 cut(s) 407, 408, 486, 567, 706, 946
CseI GACGC 1 cut(s) 221
CsiI ACCWGGT 1 cut(s) 869
Csp6I GTAC 2 cut(s) 652, 763
CviAII CATG 7 cut(s) 93, 196, 397, 493, 736, 760, 814
CviQI GTAC 2 cut(s) 652, 763
DdeI CTNAG 1 cut(s) 677
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
DrdI GACNNNNNNGTC 3 cut(s) 197, 368, 446
DriI GACNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 3 cut(s) 197, 368, 446
EaeI YGGCCR 1 cut(s) 430
EagI CGGCCG 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 185, 524, 620
Eam1105I GACNNNNNGTC 1 cut(s) 539
EarI CTCTTC 3 cut(s) 185, 524, 620
EciI GGCGGA 2 cut(s) 164, 967
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 813
Eco24I GRGCYC 3 cut(s) 333, 411, 678
Eco47I GGWCC 3 cut(s) 567, 706, 946
Eco52I CGGCCG 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 331
Eco72I CACGTG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 326
Eco91I GGTNACC 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 3 cut(s) 408, 567, 706
EcoO65I GGTNACC 1 cut(s) 473
EcoRII CCWGG 6 cut(s) 482, 543, 702, 742, 807, 869
EcoT14I CCWWGG 1 cut(s) 813
EcoT38I GRGCYC 3 cut(s) 333, 411, 678
ErhI CCWWGG 1 cut(s) 813
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 7 cut(s) 96, 199, 400, 496, 739, 763, 817
FaqI GGGAC 3 cut(s) 81, 487, 553
FatI CATG 7 cut(s) 92, 195, 396, 492, 735, 759, 813
FauI CCCGC 4 cut(s) 71, 389, 398, 717
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 9 cut(s) 140, 162, 165, 208, 375, 433, 797, 839, 858
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 3 cut(s) 333, 411, 678
Fsp4HI GCNGC 9 cut(s) 140, 162, 165, 208, 375, 433, 797, 839, 858
FspBI CTAG 1 cut(s) 788
GlaI GCGC 4 cut(s) 257, 358, 691, 895
GluI GCNGC 9 cut(s) 140, 162, 165, 208, 375, 433, 797, 839, 858
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 6 cut(s) 409, 432, 488, 722, 812, 838
HapII CCGG 4 cut(s) 285, 342, 525, 949
HgaI GACGC 1 cut(s) 221
HhaI GCGC 4 cut(s) 258, 359, 692, 896
Hin1I GRCGYC 3 cut(s) 213, 300, 732
Hin1II CATG 7 cut(s) 96, 199, 400, 496, 739, 763, 817
Hin6I GCGC 4 cut(s) 256, 357, 690, 894
HinP1I GCGC 4 cut(s) 256, 357, 690, 894
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HinfI GANTC 3 cut(s) 260, 534, 582
HpaII CCGG 4 cut(s) 285, 342, 525, 949
HphI GGTGA 3 cut(s) 61, 121, 298
Hpy166II GTNNAC 2 cut(s) 823, 847
Hpy188I TCNGA 5 cut(s) 265, 531, 581, 637, 805
Hpy188III TCNNGA 5 cut(s) 98, 316, 453, 679, 736
Hpy8I GTNNAC 2 cut(s) 823, 847
Hpy99I CGWCG 9 cut(s) 215, 293, 302, 374, 470, 652, 734, 848, 884
HpyAV CCTTC 9 cut(s) 52, 250, 464, 733, 810, 898, 927, 931, 976
HpyCH4IV ACGT 5 cut(s) 300, 335, 540, 632, 732
HpyCH4V TGCA 3 cut(s) 195, 594, 778
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 432, 441, 682, 784, 793
HpyF3I CTNAG 1 cut(s) 677
HpySE526I ACGT 5 cut(s) 300, 335, 540, 632, 732
Hsp92I GRCGYC 3 cut(s) 213, 300, 732
Hsp92II CATG 7 cut(s) 96, 199, 400, 496, 739, 763, 817
HspAI GCGC 4 cut(s) 256, 357, 690, 894
KflI GGGWCCC 1 cut(s) 567
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 507
LguI GCTCTTC 1 cut(s) 620
Lsp1109I GCAGC 3 cut(s) 151, 194, 783
LweI GCATC 2 cut(s) 354, 952
MabI ACCWGGT 1 cut(s) 869
MaeI CTAG 1 cut(s) 788
MaeII ACGT 5 cut(s) 300, 335, 540, 632, 732
MaeIII GTNAC 2 cut(s) 127, 473
MalI GATC 1 cut(s) 509
MbiI CCGCTC 1 cut(s) 841
MboI GATC 1 cut(s) 507
MboII GAAGA 4 cut(s) 172, 175, 511, 607
MhlI GDGCHC 4 cut(s) 333, 341, 411, 678
MlyI GAGTC 2 cut(s) 254, 528
MmeI TCCRAC 5 cut(s) 258, 288, 509, 660, 828
MreI CGCCGGCG 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 2 cut(s) 395, 818
MspI CCGG 4 cut(s) 285, 342, 525, 949
MspR9I CCNGG 7 cut(s) 342, 484, 545, 704, 744, 809, 871
MvaI CCWGG 6 cut(s) 484, 545, 704, 744, 809, 871
MvnI CGCG 3 cut(s) 258, 857, 894
MwoI GCNNNNNNNGC 6 cut(s) 236, 432, 441, 682, 784, 793
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 813
NdeII GATC 1 cut(s) 507
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 7 cut(s) 96, 199, 400, 496, 739, 763, 817
NlaIV GGNNCC 4 cut(s) 409, 568, 569, 708
NmeAIII GCCGAG 2 cut(s) 277, 694
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 3 cut(s) 96, 496, 763
NspV TTCGAA 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 326
PagI TCATGA 1 cut(s) 735
PciI ACATGT 3 cut(s) 92, 492, 759
PciSI GCTCTTC 1 cut(s) 620
PcsI WCGNNNNNNNCGW 3 cut(s) 111, 207, 297
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 582
PflMI CCANNNNNTGG 2 cut(s) 550, 814
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 9 cut(s) 141, 163, 166, 209, 376, 434, 798, 840, 859
PleI GAGTC 2 cut(s) 254, 528
PmaCI CACGTG 1 cut(s) 336
PmlI CACGTG 1 cut(s) 336
PpsI GAGTC 2 cut(s) 254, 528
Ppu21I YACGTR 1 cut(s) 336
PpuMI RGGWCCY 2 cut(s) 567, 706
PscI ACATGT 3 cut(s) 92, 492, 759
PsiI TTATAA 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 2 cut(s) 567, 706
Psp6I CCWGG 6 cut(s) 482, 543, 702, 742, 807, 869
PspCI CACGTG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 6 cut(s) 482, 543, 702, 742, 807, 869
PspN4I GGNNCC 4 cut(s) 409, 568, 569, 708
PspOMI GGGCCC 1 cut(s) 407
PspPI GGNCC 6 cut(s) 407, 408, 486, 567, 706, 946
PspPPI RGGWCCY 2 cut(s) 567, 706
PspXI VCTCGAGB 1 cut(s) 326
RsaI GTAC 2 cut(s) 653, 764
RsaNI GTAC 2 cut(s) 652, 763
RseI CAYNNNNRTG 2 cut(s) 395, 818
SacI GAGCTC 1 cut(s) 333
SalI GTCGAC 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 620
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 9 cut(s) 140, 162, 165, 208, 375, 433, 797, 839, 858
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 6 cut(s) 407, 408, 486, 567, 706, 946
SchI GAGTC 2 cut(s) 254, 528
ScrFI CCNGG 7 cut(s) 342, 484, 545, 704, 744, 809, 871
SduI GDGCHC 4 cut(s) 333, 341, 411, 678
SexAI ACCWGGT 1 cut(s) 869
SfaNI GCATC 2 cut(s) 354, 952
Sfr274I CTCGAG 1 cut(s) 326
SfuI TTCGAA 1 cut(s) 105
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 3 cut(s) 567, 706, 946
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 395, 818
SmlI CTYRAG 2 cut(s) 326, 451
SmoI CTYRAG 2 cut(s) 326, 451
SspMI CTAG 1 cut(s) 788
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 7 cut(s) 340, 482, 543, 702, 742, 807, 869
StyI CCWWGG 1 cut(s) 813
TaiI ACGT 5 cut(s) 303, 338, 543, 635, 735
TaqI TCGA 8 cut(s) 105, 201, 297, 327, 468, 753, 846, 879
TatI WGTACW 1 cut(s) 762
TauI GCSGC 6 cut(s) 164, 167, 377, 435, 841, 860
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 1 cut(s) 596
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 139, 207, 796
Tsp45I GTSAC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 596
Van91I CCANNNNNTGG 2 cut(s) 550, 814
VpaK11BI GGWCC 3 cut(s) 567, 706, 946
XceI RCATGY 3 cut(s) 96, 496, 763
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 846
XspI CTAG 1 cut(s) 788
ZraI GACGTC 2 cut(s) 301, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.