Rmu_co8403781.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8403781.1
OG0014949
Physical Location & Seq
Reverse (-)
753 .. 1247
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8403781.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atgtccttgtcccagatcatcaacctcttcgccggtcggagactcaacgtccaggaaatggtcgccctcgctgggtcccacaccatcggattctcccactgcaaggagttcagtaataggctcttcaagttcagccctaactccgagtacgacccgtcgtacaacccccagttcgccgaggggctcaggaagctctgcgccaactacacccaggacccgcagatgtcggccttcaacgacgtcatgacacctggcaagttcgacaacatgtactttagaaacttgcagagggggctagggttgttgccttccgaccaggccatggcggtggacaggaggacgaggccgctcgtcgacctctacgcggcgaaccagaccaggtggttcgacgatttttctcgcgctatggagaaggttagcctttataatgttaagacgggaaggaagggagaggttcggcggagatgtgatgccttcaacaatctcaaaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

164

Amino Acids

18.88

Weight (kDa)

9.54

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AatII GACGTC 1 cut(s) 243
AccB7I CCANNNNNTGG 2 cut(s) 58, 322
AccBSI CCGCTC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 354
AccII CGCG 2 cut(s) 365, 402
AciI CCGC 5 cut(s) 218, 326, 347, 365, 460
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 3 cut(s) 149, 161, 272
AfiI CCNNNNNNNGG 5 cut(s) 58, 72, 103, 322, 364
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 127, 235, 478
AhdI GACNNNNNGTC 1 cut(s) 47
AjnI CCWGG 5 cut(s) 51, 210, 250, 315, 377
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 3 cut(s) 228, 318, 344
AspLEI GCGC 2 cut(s) 200, 404
AspS9I GGNCC 2 cut(s) 75, 214
AvaII GGWCC 2 cut(s) 75, 214
BanII GRGCYC 1 cut(s) 186
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 5 cut(s) 53, 212, 252, 317, 379
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 296
BisI GCNGC 2 cut(s) 347, 366
BlsI GCNGC 2 cut(s) 348, 367
Bme1390I CCNGG 5 cut(s) 53, 212, 252, 317, 379
Bme18I GGWCC 2 cut(s) 75, 214
BmeRI GACNNNNNGTC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 75, 214
BmiI GGNNCC 3 cut(s) 76, 77, 216
BmrFI CCNGG 5 cut(s) 53, 212, 252, 317, 379
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 177, 210, 321
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 72, 103, 322, 364
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 5 cut(s) 53, 212, 252, 317, 379
BseDI CCNNGG 3 cut(s) 177, 210, 321
BseLI CCNNNNNNNGG 5 cut(s) 58, 72, 103, 322, 364
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 2 cut(s) 365, 402
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 230, 320, 346
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 5 cut(s) 58, 72, 103, 322, 364
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 3 cut(s) 230, 320, 346
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 5 cut(s) 218, 326, 347, 365, 460
BspANI GGCC 3 cut(s) 230, 320, 346
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 2 cut(s) 365, 402
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 76, 77, 216
BspQI GCTCTTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 177, 210, 321
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 5 cut(s) 53, 212, 252, 317, 379
Bst6I CTCTTC 2 cut(s) 32, 128
BstACI GRCGYC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 321
BstFNI CGCG 2 cut(s) 365, 402
BstHHI GCGC 2 cut(s) 200, 404
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 15
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 190, 292
BstNI CCWGG 5 cut(s) 53, 212, 252, 317, 379
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 5 cut(s) 51, 210, 250, 315, 377
BstUI CGCG 2 cut(s) 365, 402
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuRI GGCC 3 cut(s) 230, 320, 346
BtgI CCRYGG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 243
CfoI GCGC 2 cut(s) 200, 404
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 75, 214
CsiI ACCWGGT 1 cut(s) 377
Csp6I GTAC 3 cut(s) 148, 160, 271
CviAII CATG 3 cut(s) 244, 268, 322
CviJI RGCY 9 cut(s) 121, 135, 184, 193, 230, 295, 320, 346, 420
CviKI_1 RGCY 9 cut(s) 121, 135, 184, 193, 230, 295, 320, 346, 420
CviQI GTAC 3 cut(s) 148, 160, 271
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DriI GACNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 32, 128
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 2 cut(s) 32, 128
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 75, 214
EcoO109I RGGNCCY 2 cut(s) 75, 214
EcoRII CCWGG 5 cut(s) 51, 210, 250, 315, 377
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 247, 271, 325
FaiI YATR 6 cut(s) 245, 269, 323, 407, 426, 493
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 243, 267, 321
FauI CCCGC 1 cut(s) 225
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 347, 366
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 347, 366
FspBI CTAG 1 cut(s) 296
GlaI GCGC 2 cut(s) 199, 403
GluI GCNGC 2 cut(s) 347, 366
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 230, 320, 346
HapII CCGG 1 cut(s) 33
HhaI GCGC 2 cut(s) 200, 404
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 3 cut(s) 247, 271, 325
Hin6I GCGC 2 cut(s) 198, 402
HinP1I GCGC 2 cut(s) 198, 402
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 42, 90
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 2 cut(s) 331, 355
Hpy188I TCNGA 4 cut(s) 39, 89, 145, 313
Hpy188III TCNNGA 2 cut(s) 187, 244
Hpy8I GTNNAC 2 cut(s) 331, 355
Hpy99I CGWCG 4 cut(s) 160, 242, 356, 392
HpyAV CCTTC 6 cut(s) 241, 318, 406, 435, 439, 484
HpyCH4IV ACGT 2 cut(s) 48, 240
HpyCH4V TGCA 2 cut(s) 102, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 292
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 2 cut(s) 48, 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 3 cut(s) 247, 271, 325
HspAI GCGC 2 cut(s) 198, 402
KflI GGGWCCC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 128
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 377
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 48, 240
MalI GATC 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 349
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 19, 115
MhlI GDGCHC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 17, 336
MnlI CCTC 8 cut(s) 35, 77, 172, 282, 330, 336, 368, 445
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 5 cut(s) 53, 212, 252, 317, 379
MvaI CCWGG 5 cut(s) 53, 212, 252, 317, 379
MvnI CGCG 2 cut(s) 365, 402
MwoI GCNNNNNNNGC 2 cut(s) 190, 292
NcoI CCATGG 1 cut(s) 321
NdeII GATC 1 cut(s) 15
NlaIII CATG 3 cut(s) 247, 271, 325
NlaIV GGNNCC 3 cut(s) 76, 77, 216
NmeAIII GCCGAG 1 cut(s) 202
NspI RCATGY 1 cut(s) 271
PagI TCATGA 1 cut(s) 243
PciI ACATGT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 90
PflMI CCANNNNNTGG 2 cut(s) 58, 322
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 2 cut(s) 348, 367
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PpuMI RGGWCCY 2 cut(s) 75, 214
PscI ACATGT 1 cut(s) 267
PsiI TTATAA 1 cut(s) 426
Psp5II RGGWCCY 2 cut(s) 75, 214
Psp6I CCWGG 5 cut(s) 51, 210, 250, 315, 377
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 5 cut(s) 51, 210, 250, 315, 377
PspN4I GGNNCC 3 cut(s) 76, 77, 216
PspPI GGNCC 2 cut(s) 75, 214
PspPPI RGGWCCY 2 cut(s) 75, 214
RsaI GTAC 3 cut(s) 149, 161, 272
RsaNI GTAC 3 cut(s) 148, 160, 271
RseI CAYNNNNRTG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 347, 366
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 75, 214
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 5 cut(s) 53, 212, 252, 317, 379
SduI GDGCHC 1 cut(s) 186
SetI ASST 9 cut(s) 27, 51, 195, 243, 253, 360, 383, 417, 456
SexAI ACCWGGT 1 cut(s) 377
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 2 cut(s) 75, 214
SmiMI CAYNNNNRTG 1 cut(s) 326
SsiI CCGC 5 cut(s) 218, 326, 347, 365, 460
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 5 cut(s) 51, 210, 250, 315, 377
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 2 cut(s) 51, 243
TaqI TCGA 3 cut(s) 261, 354, 387
TatI WGTACW 1 cut(s) 270
TauI GCSGC 2 cut(s) 349, 368
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 104
TspRI CASTG 1 cut(s) 104
Van91I CCANNNNNTGG 2 cut(s) 58, 322
VpaK11BI GGWCC 2 cut(s) 75, 214
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.