Rmu_sc0012443.1_g000010

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012443.1
OG0014949
Physical Location & Seq
Reverse (-)
44356 .. 45231
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012443.1_g000010.1.cds

Sequence Viewer

Length: 876 bp
atggtccgtcaagtcgtcacagacaagcagctcgcctcccccaccaccgccgccgccaccctccgcctcttcttccacgactgcatggtcgagggctgcgacgcctccattctcatcgcctccaacgccttcaacaaagccgagcgcgactccgacatcaacctctccctcgccggcgacggcttcgacgtcatcacccgtatcaagaccaacctcgagctcacgtgccccggcatcgtttcctgcgccgacatcctcgtcgccgccacccgcaacctcatcaacatggtcggcgggccctactaccccgtccgcttcggccgcaaagacggcttcgtctcaagagccgaagccgtcgaaggtaacctcgccagggccaacatgtccttgtcccagatcatcaacctcttcgccggtcggagactcaacgtccaggaaatggtcgccctcgctgggtcccacaccatcggattctcccactgcaaggagttcagtaataggctcttcaagttcagccctaactccgagtacgacccgtcgtacaacccccagttcgccgaggggctcaggaagctctgcgccaactacacccaggacccgcagatgtcggccttcaacgacgtcatgacacctggcaagttcgacaacatgtactttagaaacttgcagagggggctagggttgttgccttccgaccaggccatggcggtggacaggaggacgaggccgctcgtcgacctctacgcggcgaaccagaccaggtggttcgacgatttttctcgcgctatggagaaggttagcctttataatgttaagacgggaaggaagggagaggttcggcggagatgtgatgccttcaacaatctcaaaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

8.96

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24110
malus_domestica MD13G1086200.v1.1 MD16G1085600.v1.1
prunus_persica Prupe.1G260500_v2.0.a1
pyrus_communis pycom13g07440
rosa_chinensis RchiOBHm_Chr4g0444711
rosa_laevigata RLG00000005810
rosa_multiflora Rmu_co8403781.1_g000001 Rmu_sc0012443.1_g000010
rosa_roxburghii Rroxscaffold_5G00385220
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415000 Rh4BG426500 Rh4CG441500 Rh4DG422500
rosa_wichuraiana Rw4G035640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AasI GACNNNNNNGTC 3 cut(s) 86, 257, 335
AatII GACGTC 2 cut(s) 192, 624
AccB7I CCANNNNNTGG 2 cut(s) 439, 703
AccBSI CCGCTC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 735
AccII CGCG 3 cut(s) 147, 746, 783
AcoI YGGCCR 1 cut(s) 319
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 3 cut(s) 102, 189, 621
AfaI GTAC 3 cut(s) 530, 542, 653
AfiI CCNNNNNNNGG 6 cut(s) 373, 439, 453, 484, 703, 745
AflIII ACRYGT 2 cut(s) 381, 648
AgsI TTSAA 4 cut(s) 133, 508, 616, 859
AhdI GACNNNNNGTC 1 cut(s) 428
AjnI CCWGG 6 cut(s) 371, 432, 591, 631, 696, 758
AluBI AGCT 3 cut(s) 31, 220, 574
AluI AGCT 3 cut(s) 31, 220, 574
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 343, 415
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 6 cut(s) 296, 319, 375, 609, 699, 725
ApaI GGGCCC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 28, 96
AspLEI GCGC 4 cut(s) 147, 248, 581, 785
AspS9I GGNCC 6 cut(s) 4, 296, 297, 375, 456, 595
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 3 cut(s) 4, 456, 595
BaeGI GKGCMC 2 cut(s) 230, 300
BanII GRGCYC 3 cut(s) 222, 300, 567
BbrPI CACGTG 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 40, 83
BccI CCATC 1 cut(s) 473
BceAI ACGGC 3 cut(s) 196, 338, 346
BciT130I CCWGG 6 cut(s) 373, 434, 593, 633, 698, 760
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 343, 415
BfaI CTAG 1 cut(s) 677
BisI GCNGC 8 cut(s) 29, 51, 54, 97, 264, 322, 728, 747
BlsI GCNGC 8 cut(s) 30, 52, 55, 98, 265, 323, 729, 748
Bme1390I CCNGG 7 cut(s) 231, 373, 434, 593, 633, 698, 760
Bme18I GGWCC 3 cut(s) 4, 456, 595
BmeRI GACNNNNNGTC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 6 cut(s) 4, 296, 297, 375, 456, 595
BmiI GGNNCC 4 cut(s) 298, 457, 458, 597
BmrFI CCNGG 7 cut(s) 231, 373, 434, 593, 633, 698, 760
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 2 cut(s) 243, 841
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 3 cut(s) 102, 189, 621
BsaJI CCNNGG 5 cut(s) 229, 372, 558, 591, 702
Bsc4I CCNNNNNNNGG 6 cut(s) 373, 439, 453, 484, 703, 745
Bse118I RCCGGY 2 cut(s) 173, 413
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 6 cut(s) 373, 434, 593, 633, 698, 760
BseDI CCNNGG 5 cut(s) 229, 372, 558, 591, 702
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 6 cut(s) 373, 439, 453, 484, 703, 745
BseMII CTCAG 1 cut(s) 580
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 2 cut(s) 230, 300
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 40, 83
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 3 cut(s) 147, 746, 783
Bsh1285I CGRYCG 2 cut(s) 322, 418
BshFI GGCC 6 cut(s) 298, 321, 377, 611, 701, 727
BsiEI CGRYCG 2 cut(s) 322, 418
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 174, 231, 414
BslFI GGGAC 2 cut(s) 376, 442
BslI CCNNNNNNNGG 6 cut(s) 373, 439, 453, 484, 703, 745
BsmAI GTCTC 2 cut(s) 343, 415
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 2 cut(s) 376, 442
BsnI GGCC 6 cut(s) 298, 321, 377, 611, 701, 727
BsoBI CYCGRG 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 4 cut(s) 222, 230, 300, 567
Bsp143I GATC 1 cut(s) 396
Bsp19I CCATGG 1 cut(s) 702
BspANI GGCC 6 cut(s) 298, 321, 377, 611, 701, 727
BspCNI CTCAG 1 cut(s) 579
BspFNI CGCG 3 cut(s) 147, 746, 783
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 4 cut(s) 298, 457, 458, 597
BspQI GCTCTTC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 730
BsrFI RCCGGY 2 cut(s) 173, 413
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 2 cut(s) 173, 413
BssECI CCNNGG 5 cut(s) 229, 372, 558, 591, 702
BssMI GATC 1 cut(s) 396
BssNI GRCGYC 3 cut(s) 102, 189, 621
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 6 cut(s) 373, 434, 593, 633, 698, 760
Bst6I CTCTTC 3 cut(s) 74, 413, 509
BstACI GRCGYC 3 cut(s) 102, 189, 621
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 33, 175, 296
BstDEI CTNAG 1 cut(s) 566
BstDSI CCRYGG 1 cut(s) 702
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 3 cut(s) 147, 746, 783
BstHHI GCGC 4 cut(s) 147, 248, 581, 785
BstKTI GATC 1 cut(s) 399
BstMAI GTCTC 2 cut(s) 343, 415
BstMBI GATC 1 cut(s) 396
BstMCI CGRYCG 2 cut(s) 322, 418
BstMWI GCNNNNNNNGC 5 cut(s) 125, 321, 330, 571, 673
BstNI CCWGG 6 cut(s) 373, 434, 593, 633, 698, 760
BstNSI RCATGY 2 cut(s) 385, 652
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 7 cut(s) 229, 371, 432, 591, 631, 696, 758
BstSLI GKGCMC 2 cut(s) 230, 300
BstUI CGCG 3 cut(s) 147, 746, 783
BstV1I GCAGC 2 cut(s) 40, 83
BstXI CCANNNNNNTGG 1 cut(s) 709
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 6 cut(s) 298, 321, 377, 611, 701, 727
BtgI CCRYGG 1 cut(s) 702
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 478
Cac8I GCNNGC 3 cut(s) 33, 175, 296
CciI TCATGA 1 cut(s) 624
CfoI GCGC 4 cut(s) 147, 248, 581, 785
Cfr10I RCCGGY 2 cut(s) 173, 413
Cfr13I GGNCC 6 cut(s) 4, 296, 297, 375, 456, 595
CseI GACGC 1 cut(s) 110
CsiI ACCWGGT 1 cut(s) 758
Csp6I GTAC 3 cut(s) 529, 541, 652
CviAII CATG 6 cut(s) 85, 286, 382, 625, 649, 703
CviQI GTAC 3 cut(s) 529, 541, 652
DdeI CTNAG 1 cut(s) 566
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
DrdI GACNNNNNNGTC 3 cut(s) 86, 257, 335
DriI GACNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 3 cut(s) 86, 257, 335
EaeI YGGCCR 1 cut(s) 319
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 3 cut(s) 74, 413, 509
Eam1105I GACNNNNNGTC 1 cut(s) 428
EarI CTCTTC 3 cut(s) 74, 413, 509
EciI GGCGGA 2 cut(s) 53, 856
Ecl136II GAGCTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 3 cut(s) 222, 300, 567
Eco47I GGWCC 3 cut(s) 4, 456, 595
Eco52I CGGCCG 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 3 cut(s) 297, 456, 595
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 6 cut(s) 371, 432, 591, 631, 696, 758
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 3 cut(s) 222, 300, 567
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 6 cut(s) 88, 289, 385, 628, 652, 706
FaiI YATR 9 cut(s) 86, 287, 383, 626, 650, 704, 788, 807, 874
FaqI GGGAC 2 cut(s) 376, 442
FatI CATG 6 cut(s) 84, 285, 381, 624, 648, 702
FauI CCCGC 3 cut(s) 278, 287, 606
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 8 cut(s) 29, 51, 54, 97, 264, 322, 728, 747
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 3 cut(s) 222, 300, 567
Fsp4HI GCNGC 8 cut(s) 29, 51, 54, 97, 264, 322, 728, 747
FspBI CTAG 1 cut(s) 677
GlaI GCGC 4 cut(s) 146, 247, 580, 784
GluI GCNGC 8 cut(s) 29, 51, 54, 97, 264, 322, 728, 747
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 6 cut(s) 298, 321, 377, 611, 701, 727
HapII CCGG 3 cut(s) 174, 231, 414
HgaI GACGC 1 cut(s) 110
HhaI GCGC 4 cut(s) 147, 248, 581, 785
Hin1I GRCGYC 3 cut(s) 102, 189, 621
Hin1II CATG 6 cut(s) 88, 289, 385, 628, 652, 706
Hin6I GCGC 4 cut(s) 145, 246, 579, 783
HinP1I GCGC 4 cut(s) 145, 246, 579, 783
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 3 cut(s) 149, 423, 471
HpaII CCGG 3 cut(s) 174, 231, 414
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 712, 736
Hpy188I TCNGA 5 cut(s) 154, 420, 470, 526, 694
Hpy188III TCNNGA 4 cut(s) 205, 342, 568, 625
Hpy8I GTNNAC 2 cut(s) 712, 736
Hpy99I CGWCG 9 cut(s) 104, 182, 191, 263, 359, 541, 623, 737, 773
HpyAV CCTTC 8 cut(s) 139, 353, 622, 699, 787, 816, 820, 865
HpyCH4IV ACGT 4 cut(s) 189, 224, 429, 621
HpyCH4V TGCA 3 cut(s) 84, 483, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 321, 330, 571, 673
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 4 cut(s) 189, 224, 429, 621
Hsp92I GRCGYC 3 cut(s) 102, 189, 621
Hsp92II CATG 6 cut(s) 88, 289, 385, 628, 652, 706
HspAI GCGC 4 cut(s) 145, 246, 579, 783
KflI GGGWCCC 1 cut(s) 456
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 396
LguI GCTCTTC 1 cut(s) 509
Lsp1109I GCAGC 2 cut(s) 40, 83
LweI GCATC 2 cut(s) 243, 841
MabI ACCWGGT 1 cut(s) 758
MaeI CTAG 1 cut(s) 677
MaeII ACGT 4 cut(s) 189, 224, 429, 621
MaeIII GTNAC 2 cut(s) 16, 362
MalI GATC 1 cut(s) 398
MbiI CCGCTC 1 cut(s) 730
MboI GATC 1 cut(s) 396
MboII GAAGA 4 cut(s) 61, 64, 400, 496
MhlI GDGCHC 4 cut(s) 222, 230, 300, 567
MlyI GAGTC 2 cut(s) 143, 417
MmeI TCCRAC 4 cut(s) 147, 177, 398, 717
MreI CGCCGGCG 1 cut(s) 173
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 813
MslI CAYNNNNRTG 2 cut(s) 284, 707
MspI CCGG 3 cut(s) 174, 231, 414
MspR9I CCNGG 7 cut(s) 231, 373, 434, 593, 633, 698, 760
MvaI CCWGG 6 cut(s) 373, 434, 593, 633, 698, 760
MvnI CGCG 3 cut(s) 147, 746, 783
MwoI GCNNNNNNNGC 5 cut(s) 125, 321, 330, 571, 673
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 702
NdeII GATC 1 cut(s) 396
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 6 cut(s) 88, 289, 385, 628, 652, 706
NlaIV GGNNCC 4 cut(s) 298, 457, 458, 597
NmeAIII GCCGAG 2 cut(s) 166, 583
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 2 cut(s) 385, 652
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 624
PciI ACATGT 2 cut(s) 381, 648
PciSI GCTCTTC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 186
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 471
PflMI CCANNNNNTGG 2 cut(s) 439, 703
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 8 cut(s) 30, 52, 55, 98, 265, 323, 729, 748
PleI GAGTC 2 cut(s) 143, 417
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 2 cut(s) 143, 417
Ppu21I YACGTR 1 cut(s) 225
PpuMI RGGWCCY 2 cut(s) 456, 595
PscI ACATGT 2 cut(s) 381, 648
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 222
Psp5II RGGWCCY 2 cut(s) 456, 595
Psp6I CCWGG 6 cut(s) 371, 432, 591, 631, 696, 758
PspCI CACGTG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 6 cut(s) 371, 432, 591, 631, 696, 758
PspN4I GGNNCC 4 cut(s) 298, 457, 458, 597
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 6 cut(s) 4, 296, 297, 375, 456, 595
PspPPI RGGWCCY 2 cut(s) 456, 595
PspXI VCTCGAGB 1 cut(s) 215
RsaI GTAC 3 cut(s) 530, 542, 653
RsaNI GTAC 3 cut(s) 529, 541, 652
RseI CAYNNNNRTG 2 cut(s) 284, 707
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 813
SatI GCNGC 8 cut(s) 29, 51, 54, 97, 264, 322, 728, 747
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 6 cut(s) 4, 296, 297, 375, 456, 595
SchI GAGTC 2 cut(s) 143, 417
ScrFI CCNGG 7 cut(s) 231, 373, 434, 593, 633, 698, 760
SduI GDGCHC 4 cut(s) 222, 230, 300, 567
SexAI ACCWGGT 1 cut(s) 758
SfaNI GCATC 2 cut(s) 243, 841
Sfr274I CTCGAG 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 3 cut(s) 4, 456, 595
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 284, 707
SmlI CTYRAG 2 cut(s) 215, 340
SmoI CTYRAG 2 cut(s) 215, 340
SspMI CTAG 1 cut(s) 677
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 7 cut(s) 229, 371, 432, 591, 631, 696, 758
StyI CCWWGG 1 cut(s) 702
TaiI ACGT 4 cut(s) 192, 227, 432, 624
TaqI TCGA 7 cut(s) 90, 186, 216, 357, 642, 735, 768
TatI WGTACW 1 cut(s) 651
TauI GCSGC 6 cut(s) 53, 56, 266, 324, 730, 749
TfiI GAWTC 1 cut(s) 471
Tru1I TTAA 1 cut(s) 813
Tru9I TTAA 1 cut(s) 813
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 28, 96
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 485
Van91I CCANNNNNTGG 2 cut(s) 439, 703
VpaK11BI GGWCC 3 cut(s) 4, 456, 595
XceI RCATGY 2 cut(s) 385, 652
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 1 cut(s) 677
ZraI GACGTC 2 cut(s) 190, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.