AT1G24350

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010674
Physical Location & Seq
Reverse (-)
8638520 .. 8640825
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24350.1

Sequence Viewer

Length: 507 bp
ATGGAGGATTCTACAGCCACGGCTACGTCTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTCATTTCCGCCGTCACCTCTTTCACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTATAGGGAACGGAGATGGGATCTCAAACAGCTTATTGGGTCTGGAGGAATGCCTTCTTCGCATTCAGCGACCGTTACAGCTCTCGCTGTAGCTATTGGTTTACAAGAAGGCTTTGGTGGATCACATTTTGCCATTGCTTTGATTTTGGCATCTGTTGTGATGTATGATGCTACCGGTGTTAGATTACATGCTGGTCGTCAAGCTGAGGTTCTCAATCAGATTGTATATGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAGACCTTTGCGGGAACTTCTTGGTCATACCCCTCCCCAGGTCGTTGCTGGTGGAATGCTTGGAAGTGCTACAGCAGTCACCGGATACTTATTTTTCAGGATAGCTACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

168

Amino Acids

18.05

Weight (kDa)

6.58

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 21 - 154 3.8e-51 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 380, 403
AclWI GGATC 2 cut(s) 159, 259
AfiI CCNNNNNNNGG 2 cut(s) 135, 430
AgeI ACCGGT 1 cut(s) 305
AjnI CCWGG 2 cut(s) 128, 429
AluBI AGCT 6 cut(s) 163, 212, 224, 335, 497, 504
AluI AGCT 6 cut(s) 163, 212, 224, 335, 497, 504
AlwI GGATC 2 cut(s) 159, 259
AsiGI ACCGGT 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 184
AsuHPI GGTGA 3 cut(s) 79, 115, 463
BarI GAAGNNNNNNTAC 2 cut(s) 348, 380
BbsI GAAGAC 2 cut(s) 21, 27
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 1 cut(s) 141
BceAI ACGGC 2 cut(s) 36, 68
BciT130I CCWGG 2 cut(s) 130, 431
BciVI GTATCC 1 cut(s) 470
BfmI CTRYAG 4 cut(s) 12, 219, 369, 462
BfuI GTATCC 1 cut(s) 470
Bme1390I CCNGG 2 cut(s) 130, 431
BmrFI CCNGG 2 cut(s) 130, 431
BmsI GCATC 2 cut(s) 289, 290
BpiI GAAGAC 2 cut(s) 21, 27
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 18, 429
BsaWI WCCGGW 2 cut(s) 305, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 430
Bse118I RCCGGY 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 130, 431
BseDI CCNNGG 2 cut(s) 18, 429
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 135, 430
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 204
BshTI ACCGGT 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 306, 474
BslI CCNNNNNNNGG 2 cut(s) 135, 430
BsmI GAATGC 3 cut(s) 186, 193, 453
Bsp143I GATC 2 cut(s) 151, 251
BspACI CCGC 3 cut(s) 81, 380, 403
BspCNI CTCAG 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 2 cut(s) 159, 259
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 18, 429
BssMI GATC 2 cut(s) 151, 251
Bst2UI CCWGG 2 cut(s) 130, 431
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 2 cut(s) 154, 254
BstMBI GATC 2 cut(s) 151, 251
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 130, 431
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 128, 429
BstSFI CTRYAG 4 cut(s) 12, 219, 369, 462
BstV2I GAAGAC 2 cut(s) 21, 27
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuI GTATCC 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 305
CspAI ACCGGT 1 cut(s) 305
CviAII CATG 1 cut(s) 320
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 153, 253
DpnII GATC 2 cut(s) 151, 251
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 128, 429
FaeI CATG 1 cut(s) 323
FaiI YATR 6 cut(s) 135, 297, 321, 358, 360, 420
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 396
FokI GGATG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 195
HapII CCGG 2 cut(s) 306, 474
Hin1II CATG 1 cut(s) 323
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 306, 474
HphI GGTGA 3 cut(s) 79, 115, 463
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 3 cut(s) 61, 174, 490
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 195, 233
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 2 cut(s) 151, 251
LweI GCATC 2 cut(s) 289, 290
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 85, 205, 469
MalI GATC 2 cut(s) 153, 253
MboI GATC 2 cut(s) 151, 251
MboII GAAGA 4 cut(s) 21, 27, 112, 180
MflI RGATCY 1 cut(s) 151
MluCI AATT 2 cut(s) 64, 107
MnlI CCTC 6 cut(s) 81, 100, 136, 170, 331, 435
MroXI GAANNNNTTC 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 2 cut(s) 306, 474
MspR9I CCNGG 2 cut(s) 130, 431
Mva1269I GAATGC 3 cut(s) 186, 193, 453
MvaI CCWGG 2 cut(s) 130, 431
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 2 cut(s) 151, 251
NlaIII CATG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 85, 469
NspI RCATGY 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 3 cut(s) 186, 193, 453
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 128, 429
PspGI CCWGG 2 cut(s) 128, 429
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 151
Sau3AI GATC 2 cut(s) 151, 251
ScrFI CCNGG 2 cut(s) 130, 431
SfaNI GCATC 2 cut(s) 289, 290
SfcI CTRYAG 4 cut(s) 12, 219, 369, 462
Sse9I AATT 2 cut(s) 64, 107
SsiI CCGC 3 cut(s) 81, 380, 403
StyD4I CCNGG 2 cut(s) 128, 429
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 64, 107
TfiI GAWTC 1 cut(s) 8
TseFI GTSAC 2 cut(s) 85, 469
Tsp45I GTSAC 2 cut(s) 85, 469
TspDTI ATGAA 2 cut(s) 100, 375
TspGWI ACGGA 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.