Rmu_co8474717.1_g000001

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474717.1
OG0010674
Physical Location & Seq
Forward (+)
1 .. 2027
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474717.1_g000001.1.cds

Sequence Viewer

Length: 566 bp
atactgggtttcgattggattggaattttacctcagaaagtcagaaactttggattgaaccaaggagaaataaggagatgggtgaggtggcggcagcttcatcgacctcaatcttcgccaactaccctcttctctcttctctaatcgctttcgcaactgcccagctcatcaagctcttcaccacctggtacaaggaaagaagatgggatattaagcaacttattggatccggcggaatgccatcatctcattctgcgactgttactgctattgctgcagccattgggtttcaagagggcgttggtggatcactctttgcaattgcactgatcttagcatgcgttgtgatgtatgatgcaactggtgtaagattacaggctggacgccaagcagaggttctgaatcaaattgtgtatgaacttccttctgagcatcctctggctgagagcattccactgcgtgaacttcttggccacacaccccctcaggttattgctggtggaattcttggaattgtcacagcgaccattggccattttataatcttggctgctagtcatacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

187

Amino Acids

20.15

Weight (kDa)

6.48

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 541
AciI CCGC 2 cut(s) 91, 233
AclWI GGATC 3 cut(s) 221, 234, 315
AcoI YGGCCR 2 cut(s) 471, 531
AcsI RAATTY 2 cut(s) 24, 503
AcyI GRCGYC 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 2 cut(s) 58, 292
AjnI CCWGG 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 3 cut(s) 97, 165, 174
AluI AGCT 3 cut(s) 97, 165, 174
AlwI GGATC 3 cut(s) 221, 234, 315
AoxI GGCC 2 cut(s) 471, 531
ApeKI GCWGC 4 cut(s) 94, 274, 277, 550
ApoI RAATTY 2 cut(s) 24, 503
AsuHPI GGTGA 2 cut(s) 94, 171
AxyI CCTNAGG 1 cut(s) 485
BalI TGGCCA 2 cut(s) 473, 533
BamHI GGATCC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 106, 261, 289, 537
BccI CCATC 3 cut(s) 72, 197, 249
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 5 cut(s) 92, 95, 275, 278, 551
BlsI GCNGC 5 cut(s) 93, 96, 276, 279, 552
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 345, 441
BmuI ACTGGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 9, 366
Bse21I CCTNAGG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 4 cut(s) 47, 419, 434, 499
BseNI ACTGG 2 cut(s) 9, 366
BseXI GCAGC 4 cut(s) 106, 261, 289, 537
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 2 cut(s) 473, 533
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 393
BsmI GAATGC 2 cut(s) 242, 449
BsnI GGCC 2 cut(s) 473, 533
Bsp143I GATC 3 cut(s) 226, 307, 329
BspACI CCGC 2 cut(s) 91, 233
BspANI GGCC 2 cut(s) 473, 533
BspCNI CTCAG 4 cut(s) 46, 420, 435, 498
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 3 cut(s) 221, 234, 315
BspQI GCTCTTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 9, 366
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 226, 307, 329
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 3 cut(s) 134, 141, 181
BstACI GRCGYC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 33, 333, 428, 443, 485
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 3 cut(s) 229, 310, 332
BstMBI GATC 3 cut(s) 226, 307, 329
BstMWI GCNNNNNNNGC 2 cut(s) 171, 274
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 4 cut(s) 106, 261, 289, 537
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 485
BsuRI GGCC 2 cut(s) 473, 533
BtsCI GGATG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 2 cut(s) 325, 454
Cac8I GCNNGC 1 cut(s) 339
CseI GACGC 1 cut(s) 392
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 338
CviJI RGCY 9 cut(s) 97, 165, 174, 280, 379, 442, 473, 533, 550
CviKI_1 RGCY 9 cut(s) 97, 165, 174, 280, 379, 442, 473, 533, 550
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 5 cut(s) 33, 333, 428, 443, 485
DpnI GATC 3 cut(s) 228, 309, 331
DpnII GATC 3 cut(s) 226, 307, 329
DraIII CACNNNGTG 1 cut(s) 460
EaeI YGGCCR 2 cut(s) 471, 531
Eam1104I CTCTTC 3 cut(s) 134, 141, 181
EarI CTCTTC 3 cut(s) 134, 141, 181
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 61
Eco81I CCTNAGG 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 341
FaiI YATR 5 cut(s) 339, 353, 416, 541, 560
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 5 cut(s) 92, 95, 275, 278, 551
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 5 cut(s) 92, 95, 275, 278, 551
FspBI CTAG 1 cut(s) 554
GluI GCNGC 5 cut(s) 92, 95, 275, 278, 551
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 473, 533
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 1 cut(s) 341
HinfI GANTC 1 cut(s) 402
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 94, 171
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 36, 44, 401, 429
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 277, 319, 325, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 274
HpyF3I CTNAG 5 cut(s) 33, 333, 428, 443, 485
HpySE526I ACGT 1 cut(s) 562
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 3 cut(s) 226, 307, 329
LguI GCTCTTC 1 cut(s) 181
Lsp1109I GCAGC 4 cut(s) 106, 261, 289, 537
LweI GCATC 2 cut(s) 345, 441
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 1 cut(s) 554
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 261, 516
MalI GATC 3 cut(s) 228, 309, 331
MboI GATC 3 cut(s) 226, 307, 329
MboII GAAGA 5 cut(s) 105, 121, 128, 168, 212
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 1 cut(s) 226
MlsI TGGCCA 2 cut(s) 473, 533
MluCI AATT 5 cut(s) 24, 320, 407, 503, 512
MluNI TGGCCA 2 cut(s) 473, 533
MnlI CCTC 8 cut(s) 42, 78, 117, 137, 288, 387, 446, 494
Mox20I TGGCCA 2 cut(s) 473, 533
MscI TGGCCA 2 cut(s) 473, 533
MseI TTAA 1 cut(s) 212
Msp20I TGGCCA 2 cut(s) 473, 533
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 2 cut(s) 242, 449
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 171, 274
NdeII GATC 3 cut(s) 226, 307, 329
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 516
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 181
PctI GAATGC 2 cut(s) 242, 449
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 5 cut(s) 93, 96, 276, 279, 552
Ppu21I YACGTR 1 cut(s) 563
PsiI TTATAA 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 5 cut(s) 92, 95, 275, 278, 551
Sau3AI GATC 3 cut(s) 226, 307, 329
ScrFI CCNGG 1 cut(s) 186
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 2 cut(s) 345, 441
SfcI CTRYAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 341
Sse9I AATT 5 cut(s) 24, 320, 407, 503, 512
SsiI CCGC 2 cut(s) 91, 233
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 12, 103
TasI AATT 5 cut(s) 24, 320, 407, 503, 512
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 2 cut(s) 332, 461
TseFI GTSAC 1 cut(s) 516
TseI GCWGC 4 cut(s) 94, 274, 277, 550
Tsp45I GTSAC 1 cut(s) 516
TspDTI ATGAA 2 cut(s) 89, 431
TspRI CASTG 2 cut(s) 332, 461
XapI RAATTY 2 cut(s) 24, 503
XceI RCATGY 1 cut(s) 341
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.