Rorug04G0248000

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010674
Physical Location & Seq
Reverse (-)
41895972 .. 41896811
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0248000.1

Sequence Viewer

Length: 840 bp
ATGGAGCTCCAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATAGATATTAATTTTGGGTCCACTAGTTCTGCTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGCCATGGGTCGACTGCAGTGTTGACCCGTATTTCTCCTCACCCTTCACTACTAGTACTAGTACTACTTTCTTTGGCAGGAATGAAGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTTTGTTCCCCATGCCCGGTGAGGACATCCTTGGCAACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTCGGACGGCTACGACGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACCCCTCCGGGGCTGGTGACTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

279

Amino Acids

29.64

Weight (kDa)

4.47

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.8e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 461
AccI GTMKAC 1 cut(s) 543
AciI CCGC 1 cut(s) 738
AfaI GTAC 4 cut(s) 91, 328, 589, 595
AfiI CCNNNNNNNGG 4 cut(s) 329, 461, 689, 820
AgsI TTSAA 1 cut(s) 665
AhlI ACTAGT 5 cut(s) 314, 410, 491, 584, 590
AjnI CCWGG 3 cut(s) 92, 322, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 7, 199, 458, 802
AluI AGCT 4 cut(s) 7, 199, 458, 802
Alw21I GWGCWC 3 cut(s) 9, 177, 804
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 452, 533
ApeKI GCWGC 2 cut(s) 50, 293
ArsI GACNNNNNNTTYG 4 cut(s) 431, 463, 464, 496
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 2 cut(s) 316, 669
AspS9I GGNCC 5 cut(s) 357, 405, 452, 486, 533
AsuC2I CCSGG 3 cut(s) 55, 690, 820
AsuHPI GGTGA 4 cut(s) 564, 644, 704, 839
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 3 cut(s) 357, 405, 486
BaeGI GKGCMC 2 cut(s) 164, 306
BamHI GGATCC 5 cut(s) 335, 383, 431, 464, 512
BanII GRGCYC 3 cut(s) 9, 262, 804
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 3 cut(s) 9, 177, 804
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 2 cut(s) 26, 443
BceAI ACGGC 2 cut(s) 72, 784
BciT130I CCWGG 3 cut(s) 94, 324, 656
BcnI CCSGG 3 cut(s) 55, 690, 820
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 5 cut(s) 314, 410, 491, 584, 590
BfaI CTAG 5 cut(s) 315, 411, 492, 585, 591
BfmI CTRYAG 2 cut(s) 168, 547
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 739
BlpI GCTNAGC 1 cut(s) 803
BlsI GCNGC 3 cut(s) 52, 295, 740
BmcAI AGTACT 2 cut(s) 589, 595
Bme1390I CCNGG 6 cut(s) 55, 94, 324, 656, 690, 820
Bme18I GGWCC 3 cut(s) 357, 405, 486
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 5 cut(s) 357, 405, 452, 486, 533
BmiI GGNNCC 9 cut(s) 245, 337, 358, 385, 406, 433, 466, 487, 514
BmrFI CCNGG 6 cut(s) 55, 94, 324, 656, 690, 820
BpmI CTGGAG 2 cut(s) 93, 179
Bpu1102I GCTNAGC 1 cut(s) 803
BpuEI CTTGAG 3 cut(s) 113, 282, 818
BpuMI CCSGG 3 cut(s) 55, 690, 820
BsaJI CCNNGG 6 cut(s) 306, 536, 630, 703, 726, 819
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 461, 689, 820
Bse1I ACTGG 5 cut(s) 205, 334, 367, 376, 505
BseBI CCWGG 3 cut(s) 94, 324, 656
BseDI CCNNGG 6 cut(s) 306, 536, 630, 703, 726, 819
BseGI GGATG 2 cut(s) 37, 699
BseLI CCNNNNNNNGG 4 cut(s) 329, 461, 689, 820
BseMII CTCAG 1 cut(s) 817
BseNI ACTGG 5 cut(s) 205, 334, 367, 376, 505
BseRI GAGGAG 2 cut(s) 559, 657
BseSI GKGCMC 2 cut(s) 164, 306
BseXI GCAGC 2 cut(s) 62, 280
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 2 cut(s) 454, 535
BsiHKAI GWGCWC 3 cut(s) 9, 177, 804
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 54, 690, 756, 819
BslI CCNNNNNNNGG 4 cut(s) 329, 461, 689, 820
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 2 cut(s) 454, 535
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 9, 164, 177, 262, 306, 804
Bsp1720I GCTNAGC 1 cut(s) 803
Bsp19I CCATGG 3 cut(s) 306, 536, 630
BspACI CCGC 1 cut(s) 738
BspANI GGCC 2 cut(s) 454, 535
BspCNI CTCAG 1 cut(s) 816
BspLI GGNNCC 9 cut(s) 245, 337, 358, 385, 406, 433, 466, 487, 514
BspMAI CTGCAG 1 cut(s) 551
BsrI ACTGG 5 cut(s) 205, 334, 367, 376, 505
BssECI CCNNGG 6 cut(s) 306, 536, 630, 703, 726, 819
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 4 cut(s) 306, 536, 630, 703
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 656
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 2 cut(s) 272, 675
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 803, 837
BstDSI CCRYGG 3 cut(s) 306, 536, 630
BstF5I GGATG 2 cut(s) 37, 699
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 744, 768
BstNI CCWGG 3 cut(s) 94, 324, 656
BstSCI CCNGG 6 cut(s) 53, 92, 322, 654, 688, 818
BstSFI CTRYAG 2 cut(s) 168, 547
BstSLI GKGCMC 2 cut(s) 164, 306
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 7 cut(s) 133, 186, 335, 383, 431, 464, 512
BstYI RGATCY 7 cut(s) 133, 186, 335, 383, 431, 464, 512
BsuRI GGCC 2 cut(s) 454, 535
BtgI CCRYGG 3 cut(s) 306, 536, 630
BtsCI GGATG 2 cut(s) 37, 699
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 360, 556
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 5 cut(s) 357, 405, 452, 486, 533
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 4 cut(s) 90, 327, 588, 594
CviAII CATG 4 cut(s) 307, 537, 631, 685
CviQI GTAC 4 cut(s) 90, 327, 588, 594
DdeI CTNAG 2 cut(s) 803, 837
Eam1104I CTCTTC 2 cut(s) 272, 675
EarI CTCTTC 2 cut(s) 272, 675
Ecl136II GAGCTC 2 cut(s) 7, 802
Eco130I CCWWGG 4 cut(s) 306, 536, 630, 703
Eco24I GRGCYC 3 cut(s) 9, 262, 804
Eco47I GGWCC 3 cut(s) 357, 405, 486
Eco53kI GAGCTC 2 cut(s) 7, 802
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 2 cut(s) 7, 802
EcoRII CCWGG 3 cut(s) 92, 322, 654
EcoT14I CCWWGG 4 cut(s) 306, 536, 630, 703
EcoT38I GRGCYC 3 cut(s) 9, 262, 804
ErhI CCWWGG 4 cut(s) 306, 536, 630, 703
FaeI CATG 4 cut(s) 310, 540, 634, 688
FaiI YATR 7 cut(s) 210, 308, 389, 538, 632, 686, 744
FatI CATG 4 cut(s) 306, 536, 630, 684
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 51, 294, 739
FokI GGATG 2 cut(s) 44, 686
FriOI GRGCYC 3 cut(s) 9, 262, 804
Fsp4HI GCNGC 3 cut(s) 51, 294, 739
FspBI CTAG 5 cut(s) 315, 411, 492, 585, 591
GluI GCNGC 3 cut(s) 51, 294, 739
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 93, 179
HaeIII GGCC 2 cut(s) 454, 535
HapII CCGG 4 cut(s) 54, 690, 756, 819
Hin1II CATG 4 cut(s) 310, 540, 634, 688
HincII GTYRAC 2 cut(s) 544, 556
HindII GTYRAC 2 cut(s) 544, 556
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 4 cut(s) 54, 690, 756, 819
HphI GGTGA 4 cut(s) 564, 644, 704, 839
Hpy166II GTNNAC 5 cut(s) 360, 408, 489, 544, 556
Hpy188I TCNGA 2 cut(s) 727, 766
Hpy188III TCNNGA 4 cut(s) 110, 182, 247, 263
Hpy8I GTNNAC 5 cut(s) 360, 408, 489, 544, 556
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 2 cut(s) 285, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 744, 768
HpyF3I CTNAG 2 cut(s) 803, 837
Hsp92II CATG 4 cut(s) 310, 540, 634, 688
LmnI GCTCC 2 cut(s) 4, 12
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 5 cut(s) 315, 411, 492, 585, 591
MaeIII GTNAC 1 cut(s) 827
MboII GAAGA 4 cut(s) 289, 629, 659, 662
MflI RGATCY 7 cut(s) 133, 186, 335, 383, 431, 464, 512
MhlI GDGCHC 6 cut(s) 9, 164, 177, 262, 306, 804
MluCI AATT 5 cut(s) 349, 397, 445, 478, 526
MroXI GAANNNNTTC 2 cut(s) 316, 669
MseI TTAA 2 cut(s) 156, 396
MspA1I CMGCKG 2 cut(s) 199, 458
MspI CCGG 4 cut(s) 54, 690, 756, 819
MspR9I CCNGG 6 cut(s) 55, 94, 324, 656, 690, 820
MvaI CCWGG 3 cut(s) 94, 324, 656
MwoI GCNNNNNNNGC 2 cut(s) 744, 768
NciI CCSGG 3 cut(s) 55, 690, 820
NcoI CCATGG 3 cut(s) 306, 536, 630
NlaIII CATG 4 cut(s) 310, 540, 634, 688
NlaIV GGNNCC 9 cut(s) 245, 337, 358, 385, 406, 433, 466, 487, 514
NmuCI GTSAC 1 cut(s) 827
PaeR7I CTCGAG 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 316, 669
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 3 cut(s) 52, 295, 740
PshBI ATTAAT 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 9, 804
Psp6I CCWGG 3 cut(s) 92, 322, 654
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 654
PspN4I GGNNCC 9 cut(s) 245, 337, 358, 385, 406, 433, 466, 487, 514
PspPI GGNCC 5 cut(s) 357, 405, 452, 486, 533
PstI CTGCAG 1 cut(s) 551
PsuI RGATCY 7 cut(s) 133, 186, 335, 383, 431, 464, 512
PvuII CAGCTG 2 cut(s) 199, 458
RsaI GTAC 4 cut(s) 91, 328, 589, 595
RsaNI GTAC 4 cut(s) 90, 327, 588, 594
SacI GAGCTC 2 cut(s) 9, 804
SalI GTCGAC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 156, 396
SatI GCNGC 3 cut(s) 51, 294, 739
Sau96I GGNCC 5 cut(s) 357, 405, 452, 486, 533
ScaI AGTACT 2 cut(s) 589, 595
ScrFI CCNGG 6 cut(s) 55, 94, 324, 656, 690, 820
SduI GDGCHC 6 cut(s) 9, 164, 177, 262, 306, 804
SetI ASST 9 cut(s) 9, 98, 201, 219, 284, 460, 714, 736, 804
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 168, 547
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 3 cut(s) 357, 405, 486
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 797
SmoI CTYRAG 4 cut(s) 128, 261, 297, 797
SpeI ACTAGT 5 cut(s) 314, 410, 491, 584, 590
Sse9I AATT 5 cut(s) 349, 397, 445, 478, 526
SsiI CCGC 1 cut(s) 738
SspMI CTAG 5 cut(s) 315, 411, 492, 585, 591
SstI GAGCTC 2 cut(s) 9, 804
StyD4I CCNGG 6 cut(s) 53, 92, 322, 654, 688, 818
StyI CCWWGG 4 cut(s) 306, 536, 630, 703
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 4 cut(s) 27, 262, 438, 543
TasI AATT 5 cut(s) 349, 397, 445, 478, 526
TatI WGTACW 2 cut(s) 587, 593
TauI GCSGC 1 cut(s) 741
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 396
Tru9I TTAA 2 cut(s) 156, 396
TscAI CASTG 2 cut(s) 367, 556
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 2 cut(s) 50, 293
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 2 cut(s) 290, 630
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 367, 556
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 3 cut(s) 357, 405, 486
VspI ATTAAT 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 543
XmnI GAANNNNTTC 2 cut(s) 316, 669
XspI CTAG 5 cut(s) 315, 411, 492, 585, 591
ZrmI AGTACT 2 cut(s) 589, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.