pycom16g09500

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010674
Physical Location & Seq
Forward (+)
6358487 .. 6360023
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09500.1

Sequence Viewer

Length: 498 bp
ATGGTTGAGGCGGCGGCATCATCATCGTCCTCAATCTTCACCAACTACCCTCTCCTCTCTGCTCTCGTAGCTTTCTCCATTGCCCAATTCATCAAGGTCTTCACCTCCTGTTGCAGGTACAAGGAAAGAAGATGGGATTTCAAGCAACTTCTTGGATCCGGCGGAATGCCATCATCTCATTCTGCGACTGTTACTGCTATTGCTACAGCCGTTGGGTTCCAAGAAGGCATCGGTGGATCACTCTTTGCCATTGCATTGGTCTTAGCATGTGTGGTGATGTATGATGCCACCGGTGTAAGATTACACGCTGGACGCCAAGCTGAGGTTTTGAATCAAATTGTGTATGAACTCCCTGCTGAACATCCTCTGGCTGAAAGCAGACCACTTCGAGAACTTCTCGGCCACACCCCTCTTCAGGTTGTTGCTGGCGGTTTGCTTGGAATTGTCACAGCAAGCATGGGCTATGTGATTATTCTTACCATCAGTCATACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

166

Amino Acids

17.5

Weight (kDa)

6.95

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 14 - 149 2.3e-50 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AciI CCGC 4 cut(s) 11, 14, 162, 429
AclWI GGATC 3 cut(s) 150, 163, 244
AcoI YGGCCR 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 3 cut(s) 114, 322, 415
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 142, 331
AluBI AGCT 2 cut(s) 71, 320
AluI AGCT 2 cut(s) 71, 320
AlwI GGATC 3 cut(s) 150, 163, 244
AoxI GGCC 1 cut(s) 400
AsiGI ACCGGT 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 31, 94, 286
BamHI GGATCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 3 cut(s) 126, 178, 488
BceAI ACGGC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
BmiI GGNNCC 2 cut(s) 157, 218
BmsI GCATC 3 cut(s) 26, 237, 274
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 381, 413
Bpu10I CCTNAGC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 322, 415
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 2 cut(s) 78, 249
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 114, 322, 415
BseMI GCAATG 2 cut(s) 78, 249
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 44
BshFI GGCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 290
BsiSI CCGG 2 cut(s) 159, 291
BslI CCNNNNNNNGG 3 cut(s) 114, 322, 415
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 1 cut(s) 402
Bsp143I GATC 2 cut(s) 155, 236
BspACI CCGC 4 cut(s) 11, 14, 162, 429
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 157, 218
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 150, 163, 244
BsrDI GCAATG 2 cut(s) 78, 249
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssMI GATC 2 cut(s) 155, 236
BssNI GRCGYC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 427, 454
BstDEI CTNAG 2 cut(s) 262, 321
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 158, 239
BstMBI GATC 2 cut(s) 155, 236
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 427, 454
Cfr10I RCCGGY 1 cut(s) 290
CseI GACGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 118
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 3 cut(s) 267, 457, 495
CviJI RGCY 6 cut(s) 71, 209, 320, 371, 402, 462
CviKI_1 RGCY 6 cut(s) 71, 209, 320, 371, 402, 462
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 262, 321
DpnI GATC 2 cut(s) 157, 238
DpnII GATC 2 cut(s) 155, 236
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
EciI GGCGGA 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 3 cut(s) 270, 460, 498
FaiI YATR 7 cut(s) 268, 282, 345, 458, 465, 489, 496
FatI CATG 3 cut(s) 266, 456, 494
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
HaeIII GGCC 1 cut(s) 402
HapII CCGG 2 cut(s) 159, 291
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 3 cut(s) 270, 460, 498
HinfI GANTC 1 cut(s) 331
HpaII CCGG 2 cut(s) 159, 291
HphI GGTGA 3 cut(s) 31, 94, 286
Hpy188III TCNNGA 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 114, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 262, 321
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 3 cut(s) 270, 460, 498
Kzo9I GATC 2 cut(s) 155, 236
LpnPI CCDG 9 cut(s) 100, 121, 172, 294, 304, 353, 366, 401, 411
LweI GCATC 3 cut(s) 26, 237, 274
MaeIII GTNAC 2 cut(s) 190, 445
MalI GATC 2 cut(s) 157, 238
MboI GATC 2 cut(s) 155, 236
MboII GAAGA 4 cut(s) 28, 91, 141, 404
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 86, 336, 441
MnlI CCTC 7 cut(s) 40, 60, 65, 115, 316, 375, 420
MspI CCGG 2 cut(s) 159, 291
Mva1269I GAATGC 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 155, 236
NlaIII CATG 3 cut(s) 270, 460, 498
NlaIV GGNNCC 2 cut(s) 157, 218
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 270
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 290
PkrI GCNGC 2 cut(s) 13, 16
PspN4I GGNNCC 2 cut(s) 157, 218
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 2 cut(s) 155, 236
SetI ASST 7 cut(s) 73, 99, 107, 119, 322, 327, 420
SfaNI GCATC 3 cut(s) 26, 237, 274
SfcI CTRYAG 1 cut(s) 204
SgrAI CRCCGGYG 1 cut(s) 290
Sse9I AATT 3 cut(s) 86, 336, 441
SsiI CCGC 4 cut(s) 11, 14, 162, 429
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 388
TasI AATT 3 cut(s) 86, 336, 441
TauI GCSGC 2 cut(s) 14, 17
TfiI GAWTC 1 cut(s) 331
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 79, 360
XagI CCTNNNNNAGG 1 cut(s) 112
XceI RCATGY 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.