RchiOBHm_Chr4g0431101

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010674
Physical Location & Seq
Reverse (-)
55419553 .. 55421873
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39981

Sequence Viewer

Length: 498 bp
ATGGGTGAGGTGGCGGCAGCTTCATCGCCTTCGTCGACCTCAATCTTCGCCAACTACCCTCTTCTCTCTTCTCTAATCGCTTTCGCAACAGCCCAGCTCATCAAGCTCTTCACCACCTGGTACAAGGAAAGAAGATGGGATATTAAGCAACTTATTGGATCCGGCGGAATGCCATCATCTCATTCTGCGACTGTTACTGCTATTGCTGCAGCCATTGGGTTTCAAGAGGGCGTTGGTGGATCACTCTTTGCAATTGCACTGATCTTAGCATGCGTTGTGATGTATGATGCAACTGGTGTAAGATTACAGGCTGGACGCCAAGCAGAGGTTCTGAATCAAATTGTGTATGAACTTCCTTCTGAGCATCCTCTGGCTGAGAGCAGACCACTGCGTGAACTTCTTGGCCACACACCCCCTCAGGTTATTGCTGGTGGAATTCTTGGAATTGTCACAGCGACCATTGGCCATTTTATAATCTTGGCTGCTAGTCATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

165

Amino Acids

17.34

Weight (kDa)

6.5

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 17 - 150 7.2e-51 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 14, 165
AclWI GGATC 3 cut(s) 153, 166, 247
AcoI YGGCCR 2 cut(s) 403, 463
AcsI RAATTY 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 316
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 20, 97, 106
AluI AGCT 3 cut(s) 20, 97, 106
AlwI GGATC 3 cut(s) 153, 166, 247
AoxI GGCC 2 cut(s) 403, 463
ApeKI GCWGC 4 cut(s) 17, 206, 209, 482
ApoI RAATTY 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 17, 103
AxyI CCTNAGG 1 cut(s) 417
BalI TGGCCA 2 cut(s) 405, 465
BamHI GGATCC 1 cut(s) 158
BbvI GCAGC 4 cut(s) 29, 193, 221, 469
BccI CCATC 2 cut(s) 129, 181
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 1 cut(s) 118
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 5 cut(s) 15, 18, 207, 210, 483
BlsI GCNGC 5 cut(s) 16, 19, 208, 211, 484
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 277, 373
BsaAI YACGTR 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 351, 366, 431
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 4 cut(s) 29, 193, 221, 469
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 405, 465
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 325
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 2 cut(s) 405, 465
Bsp143I GATC 3 cut(s) 158, 239, 261
BspACI CCGC 2 cut(s) 14, 165
BspANI GGCC 2 cut(s) 405, 465
BspCNI CTCAG 3 cut(s) 352, 367, 430
BspLI GGNNCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 3 cut(s) 153, 166, 247
BspQI GCTCTTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 298
BssMI GATC 3 cut(s) 158, 239, 261
BssNI GRCGYC 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 3 cut(s) 66, 73, 113
BstACI GRCGYC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 4 cut(s) 265, 360, 375, 417
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 3 cut(s) 161, 242, 264
BstMBI GATC 3 cut(s) 158, 239, 261
BstMWI GCNNNNNNNGC 2 cut(s) 103, 206
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 29, 193, 221, 469
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 405, 465
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 257, 386
Cac8I GCNNGC 1 cut(s) 271
CseI GACGC 1 cut(s) 324
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 270
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 4 cut(s) 265, 360, 375, 417
DpnI GATC 3 cut(s) 160, 241, 263
DpnII GATC 3 cut(s) 158, 239, 261
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 2 cut(s) 403, 463
Eam1104I CTCTTC 3 cut(s) 66, 73, 113
EarI CTCTTC 3 cut(s) 66, 73, 113
EciI GGCGGA 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 417
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 273
FaiI YATR 5 cut(s) 271, 285, 348, 473, 492
FatI CATG 1 cut(s) 269
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 5 cut(s) 15, 18, 207, 210, 483
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 5 cut(s) 15, 18, 207, 210, 483
FspBI CTAG 1 cut(s) 486
GluI GCNGC 5 cut(s) 15, 18, 207, 210, 483
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 2 cut(s) 405, 465
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 1 cut(s) 273
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 17, 103
Hpy166II GTNNAC 2 cut(s) 36, 395
Hpy188I TCNGA 2 cut(s) 333, 361
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 36, 395
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 39, 366
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 4 cut(s) 209, 251, 257, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 206
HpyF3I CTNAG 4 cut(s) 265, 360, 375, 417
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 3 cut(s) 158, 239, 261
LguI GCTCTTC 1 cut(s) 113
Lsp1109I GCAGC 4 cut(s) 29, 193, 221, 469
LweI GCATC 2 cut(s) 277, 373
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 193, 448
MalI GATC 3 cut(s) 160, 241, 263
MboI GATC 3 cut(s) 158, 239, 261
MboII GAAGA 5 cut(s) 37, 53, 60, 100, 144
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 158
MlsI TGGCCA 2 cut(s) 405, 465
MluCI AATT 4 cut(s) 252, 339, 435, 444
MluNI TGGCCA 2 cut(s) 405, 465
MnlI CCTC 6 cut(s) 49, 69, 220, 319, 378, 426
Mox20I TGGCCA 2 cut(s) 405, 465
MscI TGGCCA 2 cut(s) 405, 465
MseI TTAA 1 cut(s) 144
Msp20I TGGCCA 2 cut(s) 405, 465
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 103, 206
NdeII GATC 3 cut(s) 158, 239, 261
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 273
PaeI GCATGC 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 5 cut(s) 16, 19, 208, 211, 484
Ppu21I YACGTR 1 cut(s) 495
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 160
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 5 cut(s) 15, 18, 207, 210, 483
Sau3AI GATC 3 cut(s) 158, 239, 261
ScrFI CCNGG 1 cut(s) 118
SetI ASST 9 cut(s) 12, 22, 41, 99, 108, 119, 330, 423, 497
SexAI ACCWGGT 1 cut(s) 116
SfaNI GCATC 2 cut(s) 277, 373
SfcI CTRYAG 1 cut(s) 207
SphI GCATGC 1 cut(s) 273
Sse9I AATT 4 cut(s) 252, 339, 435, 444
SsiI CCGC 2 cut(s) 14, 165
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 497
TaqI TCGA 1 cut(s) 35
TasI AATT 4 cut(s) 252, 339, 435, 444
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 264, 393
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 17, 206, 209, 482
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 12, 363
TspRI CASTG 2 cut(s) 264, 393
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.