FvH4_4g24302

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010674
Physical Location & Seq
Reverse (-)
26529131 .. 26531145
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24302.t1

Sequence Viewer

Length: 501 bp
ATGGGTGAGGTGGCGGCAGCTGCGTCTTCTTCTTCTTCGTCTTCAATCTTCACCAACTACCCTCTTCTCTCTGCTCTCATAGCTTTCGCTCTTGCCCAATTCATCAAGCTCTTCACCACCTGGTACAAGGAAAGAAGATGGGATATTAAGCAGCTTATTGGATCCGGGGGAATGCCATCATCTCATTCTGCGACTGTTACTGCTATTGCTACAGCCATTGGGTTTCAAGAGGGCGTCGGTGGATCACTCTTTGCAATTGCACTGGTCTTAGCATGTGTTGTGATGTATGATGCAACCGGTGTAAGATTACAGGCTGGACGTCAAGCAGAGGTTTTGAATCAAATTGTGTACGAACTTCCCTCTGAGCATCCTCTGGCTGAGAGCAGACCACTGCGTGAACTTCTTGGCCACACACCCCCTCAGGTTATTGCTGGTGGGATTCTTGGAGTTGTCACAGCAACCATAGGTCATTTGATAATCTTGGCTACTAGTCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

167

Amino Acids

17.46

Weight (kDa)

6.5

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 18 - 151 5.6e-52 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
AciI CCGC 1 cut(s) 14
AclWI GGATC 3 cut(s) 156, 169, 250
AcoI YGGCCR 1 cut(s) 406
AcyI GRCGYC 2 cut(s) 234, 319
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 2 cut(s) 125, 350
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 3 cut(s) 45, 227, 337
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 4 cut(s) 20, 83, 109, 154
AluI AGCT 4 cut(s) 20, 83, 109, 154
AlwI GGATC 3 cut(s) 156, 169, 250
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 17, 20, 151
AsiGI ACCGGT 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 17, 43, 106
AxyI CCTNAGG 1 cut(s) 420
BalI TGGCCA 1 cut(s) 408
BamHI GGATCC 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 18, 33
BbvI GCAGC 3 cut(s) 7, 29, 163
BccI CCATC 2 cut(s) 132, 184
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 166
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 4 cut(s) 15, 18, 21, 152
BlsI GCNGC 4 cut(s) 16, 19, 22, 153
Bme1390I CCNGG 2 cut(s) 121, 166
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 121, 166
BmsI GCATC 2 cut(s) 280, 376
BpiI GAAGAC 2 cut(s) 18, 33
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 234, 319
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 267
Bse21I CCTNAGG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 3 cut(s) 354, 369, 434
BseNI ACTGG 1 cut(s) 267
BseXI GCAGC 3 cut(s) 7, 29, 163
BshFI GGCC 1 cut(s) 408
BshTI ACCGGT 1 cut(s) 296
BsiSI CCGG 2 cut(s) 165, 297
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 408
Bsp143I GATC 2 cut(s) 161, 242
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 3 cut(s) 355, 370, 433
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 3 cut(s) 156, 169, 250
BspQI GCTCTTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 161, 242
BssNI GRCGYC 2 cut(s) 234, 319
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 69, 116
BstACI GRCGYC 2 cut(s) 234, 319
BstDEI CTNAG 4 cut(s) 268, 363, 378, 420
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 164, 245
BstMBI GATC 2 cut(s) 161, 242
BstMWI GCNNNNNNNGC 2 cut(s) 20, 80
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 119, 164
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 7, 29, 163
BstV2I GAAGAC 2 cut(s) 18, 33
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 260, 389
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 2 cut(s) 12, 223
CsiI ACCWGGT 1 cut(s) 119
Csp6I GTAC 2 cut(s) 124, 349
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 1 cut(s) 273
CviJI RGCY 9 cut(s) 20, 83, 109, 154, 215, 314, 377, 408, 485
CviKI_1 RGCY 9 cut(s) 20, 83, 109, 154, 215, 314, 377, 408, 485
CviQI GTAC 2 cut(s) 124, 349
DdeI CTNAG 4 cut(s) 268, 363, 378, 420
DpnI GATC 2 cut(s) 163, 244
DpnII GATC 2 cut(s) 161, 242
DraIII CACNNNGTG 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 69, 116
EarI CTCTTC 2 cut(s) 69, 116
Eco81I CCTNAGG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 276
FaiI YATR 7 cut(s) 80, 274, 288, 464, 495, 497, 499
FatI CATG 1 cut(s) 272
Fnu4HI GCNGC 4 cut(s) 15, 18, 21, 152
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 4 cut(s) 15, 18, 21, 152
FspBI CTAG 1 cut(s) 489
GluI GCNGC 4 cut(s) 15, 18, 21, 152
HaeIII GGCC 1 cut(s) 408
HapII CCGG 2 cut(s) 165, 297
HgaI GACGC 2 cut(s) 12, 223
Hin1I GRCGYC 2 cut(s) 234, 319
Hin1II CATG 1 cut(s) 276
HinfI GANTC 2 cut(s) 337, 439
HpaII CCGG 2 cut(s) 165, 297
HphI GGTGA 3 cut(s) 17, 43, 106
Hpy166II GTNNAC 2 cut(s) 349, 398
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 349, 398
Hpy99I CGWCG 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 254, 260, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 80
HpyF3I CTNAG 4 cut(s) 268, 363, 378, 420
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 2 cut(s) 234, 319
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 161, 242
LguI GCTCTTC 1 cut(s) 116
Lsp1109I GCAGC 3 cut(s) 7, 29, 163
LweI GCATC 2 cut(s) 280, 376
MabI ACCWGGT 1 cut(s) 119
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 196, 451
MalI GATC 2 cut(s) 163, 244
MboI GATC 2 cut(s) 161, 242
MboII GAAGA 9 cut(s) 18, 21, 24, 27, 33, 40, 56, 103, 147
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 161
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 3 cut(s) 98, 255, 342
MluNI TGGCCA 1 cut(s) 408
MnlI CCTC 6 cut(s) 72, 223, 322, 370, 381, 429
Mox20I TGGCCA 1 cut(s) 408
MscI TGGCCA 1 cut(s) 408
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 165, 297
MspR9I CCNGG 2 cut(s) 121, 166
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 20, 80
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 161, 242
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 337, 439
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 4 cut(s) 16, 19, 22, 153
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 125, 350
RsaNI GTAC 2 cut(s) 124, 349
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 15, 18, 21, 152
Sau3AI GATC 2 cut(s) 161, 242
ScrFI CCNGG 2 cut(s) 121, 166
SexAI ACCWGGT 1 cut(s) 119
SfaNI GCATC 2 cut(s) 280, 376
SfcI CTRYAG 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 3 cut(s) 98, 255, 342
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 119, 164
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 322
TasI AATT 3 cut(s) 98, 255, 342
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 337, 439
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 267, 396
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 17, 20, 151
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 2 cut(s) 267, 396
XceI RCATGY 1 cut(s) 276
XspI CTAG 1 cut(s) 489
ZraI GACGTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.